EWM25608.1, cds5065 (CDS) Nannochloropsis gaditana

Overview
NameEWM25608.1
Unique Namecds5065
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:52466..52511 +
Alignment locationCM002465.1:52652..52737 +
Alignment locationCM002465.1:52974..53093 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25608.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101047g1.5282.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:52466..52511 +
CM002465.1supercontigCM002465.1:52652..52737 +
CM002465.1supercontigCM002465.1:52974..53093 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR002781TM_pro_TauE-like
Homology
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|585107424|gb|EWM25608.1| (hypothetical protein Naga_101047g1 [Nannochloropsis gaditana])

HSP 1 Score: 167.162 bits (422), Expect = 1.679e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK 83
            MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK
Sbjct:    1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK 83          
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|1072225325|gb|OEU10072.1| (hypothetical protein FRACYDRAFT_247682 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 61.6178 bits (148), Expect = 1.739e-9
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTI 66
            MVPTA+VGT +H  +G V       LA+G+  G++ GGK + + IPE  LK+GF   MVVLG +T+
Sbjct:  203 MVPTAIVGTATHMGKGSVAMKVAPGLALGAFTGAYFGGK-LGLSIPEKELKYGFSATMVVLGLRTL 267          
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|922868014|gb|KOO34511.1| (hypothetical protein Ctob_010236 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 58.9214 bits (141), Expect = 1.237e-8
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0
Query:    1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMAL 77
            MVP ALV  ++HH  G+VV S V PL +GS  GSF  G ++A+++PE  L+W F I++        +S G LK  AL
Sbjct:  155 MVPPALVSVYTHHGMGNVVASAVVPLVIGSALGSFASG-QVAVRVPEEPLQWVFAIVL--------FSQGALKLWAL 222          
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|397625657|gb|EJK67875.1| (hypothetical protein THAOC_11023, partial [Thalassiosira oceanica])

HSP 1 Score: 58.5362 bits (140), Expect = 3.407e-8
Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = 0
Query:    1 MVPTALVGTHSHHAQGHVVWSFVAPL-AVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKT 65
            MV  ++VGT++H+ +G+V    VAPL A+GS  GS+ GG+ +  ++ E+ +K GF ++M+VLG+KT
Sbjct:  269 MVLPSMVGTYTHYCKGNVALR-VAPLIALGSAAGSYFGGRYVGTELNEDVMKAGFSVLMLVLGAKT 333          
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|223995275|ref|XP_002287321.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976437|gb|EED94764.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 58.151 bits (139), Expect = 3.598e-8
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKT 65
            MV  A+VGT++H  +G+V W     LA+GS  G+++GGKE+ + + E  L+ GF  +M+VLG KT
Sbjct:  230 MVLPAMVGTYTHAKRGNVNWRVGPLLALGSAVGAYVGGKEVGIHMEEGVLQAGFSCLMLVLGVKT 294          
The following BLAST results are available for this feature:
BLAST of EWM25608.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585107424|gb|EWM25608.1|1.679e-52100.00hypothetical protein Naga_101047g1 [Nannochloropsi... [more]
gi|1072225325|gb|OEU10072.1|1.739e-946.97hypothetical protein FRACYDRAFT_247682 [Fragilario... [more]
gi|922868014|gb|KOO34511.1|1.237e-844.16hypothetical protein Ctob_010236 [Chrysochromulina... [more]
gi|397625657|gb|EJK67875.1|3.407e-843.94hypothetical protein THAOC_11023, partial [Thalass... [more]
gi|223995275|ref|XP_002287321.1|3.598e-844.62predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5077rna5077Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications