EWM25608.1, cds5065 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|585107424|gb|EWM25608.1| (hypothetical protein Naga_101047g1 [Nannochloropsis gaditana]) HSP 1 Score: 167.162 bits (422), Expect = 1.679e-52 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query: 1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK 83
MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK
Sbjct: 1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAK 83
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|1072225325|gb|OEU10072.1| (hypothetical protein FRACYDRAFT_247682 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 61.6178 bits (148), Expect = 1.739e-9 Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0
Query: 1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTI 66
MVPTA+VGT +H +G V LA+G+ G++ GGK + + IPE LK+GF MVVLG +T+
Sbjct: 203 MVPTAIVGTATHMGKGSVAMKVAPGLALGAFTGAYFGGK-LGLSIPEKELKYGFSATMVVLGLRTL 267
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|922868014|gb|KOO34511.1| (hypothetical protein Ctob_010236 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 58.9214 bits (141), Expect = 1.237e-8 Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0
Query: 1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMAL 77
MVP ALV ++HH G+VV S V PL +GS GSF G ++A+++PE L+W F I++ +S G LK AL
Sbjct: 155 MVPPALVSVYTHHGMGNVVASAVVPLVIGSALGSFASG-QVAVRVPEEPLQWVFAIVL--------FSQGALKLWAL 222
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|397625657|gb|EJK67875.1| (hypothetical protein THAOC_11023, partial [Thalassiosira oceanica]) HSP 1 Score: 58.5362 bits (140), Expect = 3.407e-8 Identity = 29/66 (43.94%), Postives = 48/66 (72.73%), Query Frame = 0
Query: 1 MVPTALVGTHSHHAQGHVVWSFVAPL-AVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKT 65
MV ++VGT++H+ +G+V VAPL A+GS GS+ GG+ + ++ E+ +K GF ++M+VLG+KT
Sbjct: 269 MVLPSMVGTYTHYCKGNVALR-VAPLIALGSAAGSYFGGRYVGTELNEDVMKAGFSVLMLVLGAKT 333
BLAST of EWM25608.1 vs. NCBI_GenBank
Match: gi|223995275|ref|XP_002287321.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976437|gb|EED94764.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 58.151 bits (139), Expect = 3.598e-8 Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 0
Query: 1 MVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKT 65
MV A+VGT++H +G+V W LA+GS G+++GGKE+ + + E L+ GF +M+VLG KT
Sbjct: 230 MVLPAMVGTYTHAKRGNVNWRVGPLLALGSAVGAYVGGKEVGIHMEEGVLQAGFSCLMLVLGVKT 294 The following BLAST results are available for this feature:
BLAST of EWM25608.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|