EWM25664.1, cds5010 (CDS) Nannochloropsis gaditana

Overview
NameEWM25664.1
Unique Namecds5010
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:949285..949869 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25664.1
Productring u-box domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101014g1.2731.mrna
GbkeyCDS
End range.
End range949869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:949285..949869 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006950response to stress
GO:0042221response to chemical
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|585107499|gb|EWM25664.1| (ring u-box domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 373.244 bits (957), Expect = 1.763e-130
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT 194
            ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT
Sbjct:    1 ARTLSAFHHLLPLLQPFRLPLLRAGQAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSVERLGYLYLRHVVLPAPSPPPFPASSPASSFASWLLPGMRKNRSGMPMSASSFT 194          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1134784724|gb|APX52968.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina])

HSP 1 Score: 108.997 bits (271), Expect = 9.725e-27
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLG--LLGNDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L   +L  D  W+ KFERV  +GF  L   W LR +VLP+    L+ L  PY  S+ V
Sbjct:   21 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMLLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 138          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951955|gb|AJO53734.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. australasica])

HSP 1 Score: 107.457 bits (267), Expect = 1.686e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+ KFERV  +GF  L   W LR +VLP+    L+ L  PY  S+ V
Sbjct:    6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951951|gb|AJO53732.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. eucalyptifolia])

HSP 1 Score: 107.457 bits (267), Expect = 1.779e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+ KFERV  +GF  L   W LR +VLP+    L+ L  PY  S+ V
Sbjct:    6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951953|gb|AJO53733.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina])

HSP 1 Score: 107.457 bits (267), Expect = 1.820e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+ KFERV  +GF  L   W LR +VLP+    L+ L  PY  S+ V
Sbjct:    6 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 123          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|672144015|ref|XP_008795897.1| (PREDICTED: probable E3 ubiquitin ligase SUD1 [Phoenix dactylifera])

HSP 1 Score: 115.546 bits (288), Expect = 2.372e-26
Identity = 56/118 (47.46%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            + + LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+RKFERV  +GF+ L   W LR +V+P++   L+ L  PY FSK +
Sbjct:  883 KISALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLEQMAPLVDESWRRKFERVREDGFFRLRGLWVLREIVIPIVSKLLTALCVPYVFSKGI 1000          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1035946283|gb|OAY70678.1| (putative E3 ubiquitin ligase SUD1 [Ananas comosus])

HSP 1 Score: 115.546 bits (288), Expect = 2.470e-26
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            +++ LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+RKFERV  +GF  L   W  R +V+P++   L+LL  PY F+K +
Sbjct:  821 KSSALLSIWIFVIPVLIGLLFELLVIVPIRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMAPLVDESWRRKFERVREDGFSRLRGLWVFREIVIPIITKLLTLLCVPYVFAKGI 938          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|1147597796|ref|XP_020102815.1| (probable E3 ubiquitin ligase SUD1 [Ananas comosus])

HSP 1 Score: 115.161 bits (287), Expect = 3.138e-26
Identity = 55/118 (46.61%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            +++ LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+RKFERV  +GF  L   W  R +V+P++   L+LL  PY F+K +
Sbjct:  884 KSSALLSIWIFVIPVLIGLLFELLVIVPIRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDQMAPLVDESWRRKFERVREDGFSRLRGLWVFREIVIPIITKLLTLLCVPYVFAKGI 1001          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|544636758|gb|AGW24427.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia marina subsp. marina])

HSP 1 Score: 107.071 bits (266), Expect = 5.164e-26
Identity = 56/118 (47.46%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++WL ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+ KFERV  +GF  L   W LR +VLP+    L+ L  PY  S+ V
Sbjct:   21 KSSVLLSIWLFVVPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQVLWVLREIVLPITMKLLTALCVPYVLSRGV 138          
BLAST of EWM25664.1 vs. NCBI_GenBank
Match: gi|757951949|gb|AJO53731.1| (E3 ubiquitin-protein ligase MARCH6, partial [Avicennia germinans])

HSP 1 Score: 105.916 bits (263), Expect = 5.594e-26
Identity = 54/118 (45.76%), Postives = 80/118 (67.80%), Query Frame = 0
Query:   26 QAALLLALWLLLLPLLVGLLFELAVILPARVPVDETPLIPLYEAWVLGLVFLKISVRCLLLGLLG--NDHPWKRKFERVGANGFWNLDFTWTLRHVVLPVLCLFLSLLLPPYFFSKSV 141
            ++++LL++W+ ++P+L+GLLFEL VI+P RVPVDE+P+  LY+ W LGL+FLKI  R ++L  +    D  W+ KFERV  +GF  L   W LR +V P++   L+ L  PY  S+ V
Sbjct:    6 KSSVLLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLSRGV 123          
The following BLAST results are available for this feature:
BLAST of EWM25664.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107499|gb|EWM25664.1|1.763e-130100.00ring u-box domain-containing protein, partial [Nan... [more]
gi|1134784724|gb|APX52968.1|9.725e-2748.31E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
gi|757951955|gb|AJO53734.1|1.686e-2647.46E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
gi|757951951|gb|AJO53732.1|1.779e-2647.46E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
gi|757951953|gb|AJO53733.1|1.820e-2647.46E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
gi|672144015|ref|XP_008795897.1|2.372e-2647.46PREDICTED: probable E3 ubiquitin ligase SUD1 [Phoe... [more]
gi|1035946283|gb|OAY70678.1|2.470e-2646.61putative E3 ubiquitin ligase SUD1 [Ananas comosus][more]
gi|1147597796|ref|XP_020102815.1|3.138e-2646.61probable E3 ubiquitin ligase SUD1 [Ananas comosus][more]
gi|544636758|gb|AGW24427.1|5.164e-2647.46E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
gi|757951949|gb|AJO53731.1|5.594e-2645.76E3 ubiquitin-protein ligase MARCH6, partial [Avice... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5022rna5022Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications