EWM25668.1, cds5004 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585107504|gb|EWM25668.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 941.028 bits (2431), Expect = 0.000e+0 Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0 Query: 1 MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK 451 MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK Sbjct: 1 MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK 451
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585107503|gb|EWM25667.1| (hypothetical protein Naga_100355g3 [Nannochloropsis gaditana]) HSP 1 Score: 413.69 bits (1062), Expect = 4.280e-139 Identity = 228/253 (90.12%), Postives = 236/253 (93.28%), Query Frame = 0 Query: 168 ASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 420 ASDLEG+ LHQD+ES+LAEHQTDGSFDGL QN HNPVPFL+ +RHQQQQHQYP+ QQQQCPSSPSSTCC+PRGGVWRTMAGKGWLPD PVSSIEEE DAVV+SE E VGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGT PAPHAMAMDELVGHSPG TVPAG C GN GNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP Sbjct: 144 ASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 396 HSP 2 Score: 113.235 bits (282), Expect = 6.356e-24 Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0 Query: 115 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTAS 169 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPT + Sbjct: 2 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGA 56
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012]) HSP 1 Score: 113.235 bits (282), Expect = 3.236e-24 Identity = 69/182 (37.91%), Postives = 97/182 (53.30%), Query Frame = 0 Query: 4 CAGELEGCCDSLSASEYLT-EDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFS-----RGGRRPTASDLEGDHLHQD 179 C G D ++ S T D+ +AG E +P +Y DAHF + + L A A + G P GRWT +EH+ FL+GL +G+DW +I + + TRS Q+RSHAQKYFQ++ QAK SGR+G+ DFQ +MDGKRM S GGR+ + +G + +D Sbjct: 5 CQGAAHSTSDCVACSVDSTHRDETREAGQEPPEKPRIY--DAHFAPCTLD-LTPSWAPAPNKEGG--------------PSPLPGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRMFKSAQKRGSGGRKENKTGAQGTNQRRD 169
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 91.6633 bits (226), Expect = 4.075e-16 Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0 Query: 83 KTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRR 165 + + GRWT EEHVLFL+GL+ HGK WK+I K + TR++ QIR+HAQKYFQK+ +AK++G GD L M+G R GG+R Sbjct: 97 RENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGD---MLGMEGTRF----GGKR 172
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585103166|gb|EWM22603.1| (myb-like dna-binding shaqkyf class family protein [Nannochloropsis gaditana]) HSP 1 Score: 78.1814 bits (191), Expect = 1.594e-14 Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0 Query: 86 NGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGD 145 GRWT +EH+ FL+GL +G+DW +I + + TRS Q+RSHAQKYFQ++ QAK S R+G+ Sbjct: 6 QGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 85.8853 bits (211), Expect = 2.193e-14 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155 P + GRWT EEH LFLQGL+ HGK WK+I + +R++ QIR+HAQKYFQK+ +A+++G GD + M+G+ Sbjct: 94 PGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----ITMEGR 163
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 85.5001 bits (210), Expect = 2.511e-14 Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155 P + GRWT EEH LFLQGL+ HGK WK+I + +R++ QIR+HAQKYFQK+ +A+++G GD + M+G+ Sbjct: 95 PGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----ITMEGR 164
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 76.2554 bits (186), Expect = 4.461e-14 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 0 Query: 88 RWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSG 141 RWT+EEH LFLQGL+ HGK WK+I + +R++ QIR+HAQKYFQK+ +AK++G Sbjct: 1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 84.3445 bits (207), Expect = 7.038e-14 Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 0 Query: 85 HNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFS 160 + GRWT EEH LFLQGL+ HGK WK+I + +R++ QIR+HAQKYFQK+ +A+++G GD + M+G+ V S Sbjct: 116 NTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----VAMEGRGGVAS 187
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 83.9593 bits (206), Expect = 7.049e-14 Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155 PK + GRWT +EH LFL+GL+ HGK WK+I + TR++ QIR+HAQKYFQK+ +AK++G GD + MD K Sbjct: 3 PK-NTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGD----VAMDSK 71 The following BLAST results are available for this feature:
BLAST of EWM25668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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