EWM25668.1, cds5004 (CDS) Nannochloropsis gaditana

Overview
NameEWM25668.1
Unique Namecds5004
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:939565..939823 -
Alignment locationCM002464.1:939048..939290 -
Alignment locationCM002464.1:938016..938781 -
Alignment locationCM002464.1:937703..937790 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25668.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100355g5.9418.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:939565..939823 -
CM002464.1supercontigCM002464.1:939048..939290 -
CM002464.1supercontigCM002464.1:938016..938781 -
CM002464.1supercontigCM002464.1:937703..937790 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR006447Myb_dom_plants
IPR001005SANT/Myb
Homology
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585107504|gb|EWM25668.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 941.028 bits (2431), Expect = 0.000e+0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
Query:    1 MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK 451
            MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK
Sbjct:    1 MVACAGELEGCCDSLSASEYLTEDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRPFKSGCWVKVSSLVVGRNTNRRDATDLNRTFK 451          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585107503|gb|EWM25667.1| (hypothetical protein Naga_100355g3 [Nannochloropsis gaditana])

HSP 1 Score: 413.69 bits (1062), Expect = 4.280e-139
Identity = 228/253 (90.12%), Postives = 236/253 (93.28%), Query Frame = 0
Query:  168 ASDLEGDHLHQDEESSLAEHQTDGSFDGLPQNMHNPVPFLEPHYRHQQQQHQYPNHWQQQQCPSSPSSTCCTPRGGVWRTMAGKGWLPDTCPVSSIEEEIDAVVKSELEHVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTCPAPHAMAMDELVGHSPGPTVPAGCCTGNNGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 420
            ASDLEG+ LHQD+ES+LAEHQTDGSFDGL QN HNPVPFL+  +RHQQQQHQYP+  QQQQCPSSPSSTCC+PRGGVWRTMAGKGWLPD  PVSSIEEE DAVV+SE E VGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGT PAPHAMAMDELVGHSPG TVPAG C GN GNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP
Sbjct:  144 ASDLEGNPLHQDQESNLAEHQTDGSFDGLSQNTHNPVPFLDLRHRHQQQQHQYPDQCQQQQCPSSPSSTCCSPRGGVWRTMAGKGWLPDISPVSSIEEETDAVVESEREDVGVSWGGREGGAREERNEDEVEDALAMDFLRATSHLFPLEELRSFVTGVASDVGSHREDGTFPAPHAMAMDELVGHSPGSTVPAGYCRGNGGNVQGANWAWTGTGASVPADTDPLTVGPLMSSCAVASDDASHRGKSESFLRP 396          

HSP 2 Score: 113.235 bits (282), Expect = 6.356e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 0
Query:  115 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTAS 169
            LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPT +
Sbjct:    2 LTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRRPTGA 56          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 113.235 bits (282), Expect = 3.236e-24
Identity = 69/182 (37.91%), Postives = 97/182 (53.30%), Query Frame = 0
Query:    4 CAGELEGCCDSLSASEYLT-EDKIHDAGDEETPRPNVYYYDAHFLLHSAETLVSVVARAADGTAGHIGNKRRGRRTCSKPKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFS-----RGGRRPTASDLEGDHLHQD 179
            C G      D ++ S   T  D+  +AG E   +P +Y  DAHF   + + L    A A +   G              P    GRWT +EH+ FL+GL  +G+DW +I + + TRS  Q+RSHAQKYFQ++ QAK SGR+G+ DFQ +MDGKRM  S      GGR+   +  +G +  +D
Sbjct:    5 CQGAAHSTSDCVACSVDSTHRDETREAGQEPPEKPRIY--DAHFAPCTLD-LTPSWAPAPNKEGG--------------PSPLPGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRMFKSAQKRGSGGRKENKTGAQGTNQRRD 169          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 91.6633 bits (226), Expect = 4.075e-16
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0
Query:   83 KTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFSRGGRR 165
            + + GRWT EEHVLFL+GL+ HGK WK+I K + TR++ QIR+HAQKYFQK+ +AK++G  GD    L M+G R     GG+R
Sbjct:   97 RENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGD---MLGMEGTRF----GGKR 172          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|585103166|gb|EWM22603.1| (myb-like dna-binding shaqkyf class family protein [Nannochloropsis gaditana])

HSP 1 Score: 78.1814 bits (191), Expect = 1.594e-14
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:   86 NGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGD 145
             GRWT +EH+ FL+GL  +G+DW +I + + TRS  Q+RSHAQKYFQ++ QAK S R+G+
Sbjct:    6 QGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRIAQAKESRRIGE 65          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 85.8853 bits (211), Expect = 2.193e-14
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155
            P  + GRWT EEH LFLQGL+ HGK WK+I   + +R++ QIR+HAQKYFQK+ +A+++G  GD    + M+G+
Sbjct:   94 PGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----ITMEGR 163          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 85.5001 bits (210), Expect = 2.511e-14
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155
            P  + GRWT EEH LFLQGL+ HGK WK+I   + +R++ QIR+HAQKYFQK+ +A+++G  GD    + M+G+
Sbjct:   95 PGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----ITMEGR 164          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 76.2554 bits (186), Expect = 4.461e-14
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 0
Query:   88 RWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSG 141
            RWT+EEH LFLQGL+ HGK WK+I   + +R++ QIR+HAQKYFQK+ +AK++G
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.3445 bits (207), Expect = 7.038e-14
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 0
Query:   85 HNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGKRMVFS 160
            + GRWT EEH LFLQGL+ HGK WK+I   + +R++ QIR+HAQKYFQK+ +A+++G  GD    + M+G+  V S
Sbjct:  116 NTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGD----VAMEGRGGVAS 187          
BLAST of EWM25668.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.9593 bits (206), Expect = 7.049e-14
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 0
Query:   82 PKTHNGRWTNEEHVLFLQGLDAHGKDWKQIHKKLTTRSLGQIRSHAQKYFQKVEQAKRSGRLGDGDFQLLMDGK 155
            PK + GRWT +EH LFL+GL+ HGK WK+I   + TR++ QIR+HAQKYFQK+ +AK++G  GD    + MD K
Sbjct:    3 PK-NTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGD----VAMDSK 71          
The following BLAST results are available for this feature:
BLAST of EWM25668.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107504|gb|EWM25668.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585107503|gb|EWM25667.1|4.280e-13990.12hypothetical protein Naga_100355g3 [Nannochloropsi... [more]
gi|432998484|gb|AGB13670.1|3.236e-2437.91MYB360 [Nannochloropsis sp. YJH-2012][more]
gi|585113115|gb|EWM30452.1|4.075e-1654.22SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585103166|gb|EWM22603.1|1.594e-1455.00myb-like dna-binding shaqkyf class family protein ... [more]
gi|1210516787|dbj|GAX24276.1|2.193e-1451.35protein MYSM1 [Fistulifera solaris][more]
gi|1210512502|dbj|GAX28359.1|2.511e-1451.35protein MYSM1 [Fistulifera solaris][more]
gi|1072235817|gb|OEU20545.1|4.461e-1461.11hypothetical protein FRACYDRAFT_165241, partial [F... [more]
gi|219128113|ref|XP_002184266.1|7.038e-1451.32predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298714408|emb|CBJ27465.1|7.049e-1454.05conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5016rna5016Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications