EWM25673.1, cds5001 (CDS) Nannochloropsis gaditana

Overview
NameEWM25673.1
Unique Namecds5001
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:928546..928632 +
Alignment locationCM002464.1:928757..929344 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25673.1
Product2fe-2s iron-sulfur cluster binding domain-containing protein
Orig transcript idgnl|cribi|Naga_101185g2.10087.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:928546..928632 +
CM002464.1supercontigCM002464.1:928757..929344 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR012675Beta-grasp_dom
IPR001055Adrenodoxin
Homology
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|585107513|gb|EWM25673.1| (2fe-2s iron-sulfur cluster binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 456.447 bits (1173), Expect = 2.016e-162
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224
            MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK
Sbjct:    1 MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|553176357|ref|XP_005852372.1| (ferredoxin, partial [Nannochloropsis gaditana CCMP526] >gi|422296156|gb|EKU23455.1| ferredoxin, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 174.096 bits (440), Expect = 6.493e-53
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:  101 MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK 184
            MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK
Sbjct:    1 MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK 84          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1173958550|gb|OQS04894.1| (2Fe-2S ferredoxin [Thraustotheca clavata])

HSP 1 Score: 145.976 bits (367), Expect = 5.404e-41
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +G+   VT P G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LP   EEEEDMLDLAWGLT+TSRLGCQIKVT  ++  ++ IP+E+NNM+
Sbjct:   44 DGKEKQVTTPVGETILDIAHSNDIELEGACGGELACSTCHCVFEPSIFANLPEICEEEEDMLDLAWGLTDTSRLGCQIKVTKEMDGMIVKIPDESNNMI 142          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|673017236|ref|XP_008862579.1| (hypothetical protein H310_01292 [Aphanomyces invadans] >gi|574481782|gb|ETW08774.1| hypothetical protein H310_01292 [Aphanomyces invadans])

HSP 1 Score: 144.821 bits (364), Expect = 2.210e-40
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +G    VTA  G+T LE+AH+NDIELEGACGGELACSTCH VF P +YA LP   EEEEDMLD+AWGLT+TSRLGCQIK TP ++   +TIP+ +NNML
Sbjct:   56 DGAKKEVTAAIGETFLEIAHNNDIELEGACGGELACSTCHCVFEPAVYATLPPITEEEEDMLDMAWGLTDTSRLGCQIKATPEMDGITVTIPDGSNNML 154          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|813156336|ref|XP_012201517.1| (hypothetical protein SPRG_07337 [Saprolegnia parasitica CBS 223.65] >gi|641533735|gb|KDO27708.1| hypothetical protein SPRG_07337 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 143.665 bits (361), Expect = 4.146e-40
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 0
Query:   99 VTMTW-HVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +T T+   +G    VT   G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LPA  EEEEDMLDLAWGLT+TSRLGCQ+KVT  ++  V+ IP+E+NNM+
Sbjct:   43 ITFTFIEADGAKKDVTTAVGETILDIAHANDIELEGACGGELACSTCHCVFDPTIFATLPAICEEEEDMLDLAWGLTDTSRLGCQVKVTKDMDKMVVKIPDESNNMM 149          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|695370920|ref|XP_009514430.1| (hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae] >gi|348687341|gb|EGZ27155.1| hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae])

HSP 1 Score: 142.124 bits (357), Expect = 4.402e-40
Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            EGE+ +VTA EG+TLL+VAH+ND+ELEGACGGELACSTCH+VF   ++  LP   EEEEDMLDLAWGLT+TSRLGCQI VT  +E   + IP+E +N++
Sbjct:   10 EGESTSVTAEEGQTLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQITVTKEMEGMTVRIPDEADNLM 108          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|669145258|ref|XP_008608191.1| (hypothetical protein SDRG_04301 [Saprolegnia diclina VS20] >gi|530740357|gb|EQC38599.1| hypothetical protein SDRG_04301 [Saprolegnia diclina VS20])

HSP 1 Score: 143.28 bits (360), Expect = 6.540e-40
Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +G    VT   G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LPA  EEEEDMLDLAWGLT+TSRLGCQ+KVT  ++  V+ IP+E+NNM+
Sbjct:   51 DGTKKDVTTAVGETILDIAHANDIELEGACGGELACSTCHCVFDPTIFATLPAICEEEEDMLDLAWGLTDTSRLGCQVKVTKDMDKMVVKIPDESNNMM 149          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|698776976|ref|XP_009821532.1| (hypothetical protein H257_00505 [Aphanomyces astaci] >gi|574123657|gb|ETV89132.1| hypothetical protein H257_00505 [Aphanomyces astaci])

HSP 1 Score: 143.28 bits (360), Expect = 7.790e-40
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +G    V+A  G+T LE+AH+NDIELEGACGGELACSTCH VF P +YA LP   EEEEDMLD+AWGLT+TSRLGCQIK TP ++   +TIP+ +NNML
Sbjct:   60 DGTKKDVSAVVGETFLEIAHNNDIELEGACGGELACSTCHCVFDPAVYATLPPITEEEEDMLDMAWGLTDTSRLGCQIKATPEMDGITVTIPDGSNNML 158          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1173951318|gb|OQR99217.1| (2Fe-2S ferredoxin [Achlya hypogyna])

HSP 1 Score: 139.043 bits (349), Expect = 3.142e-38
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 0
Query:  106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            +G    +T   G+T+L++AH ND+ELEGACGGELACSTCH +F P ++A LP   EEEEDMLDLAWGL++TSRLGCQ+KVT  +E  V+ IP+E+NNM+
Sbjct:   51 DGSKKEITTAVGETILDIAHSNDVELEGACGGELACSTCHCIFEPAVFANLPPICEEEEDMLDLAWGLSDTSRLGCQVKVTKDMEGMVVKIPDESNNMM 149          
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1214708488|gb|OWZ19766.1| (2Fe-2S ferredoxin [Phytophthora megakarya])

HSP 1 Score: 137.887 bits (346), Expect = 3.582e-38
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 0
Query:   97 KDVTMTW-HVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
            + VT T+   EGE   V A EG++LL+VAH+ND+ELEGACGGELACSTCH+VF   ++  LP   EEEEDMLDLAWGLT+TSRLGCQI VT  +E   + IP+E +N+L
Sbjct:   11 RHVTFTFVDGEGERSTVQAEEGQSLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQIPVTKAMEGMTVRIPDEADNLL 119          
The following BLAST results are available for this feature:
BLAST of EWM25673.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107513|gb|EWM25673.1|2.016e-162100.002fe-2s iron-sulfur cluster binding domain-containi... [more]
gi|553176357|ref|XP_005852372.1|6.493e-53100.00ferredoxin, partial [Nannochloropsis gaditana CCMP... [more]
gi|1173958550|gb|OQS04894.1|5.404e-4165.662Fe-2S ferredoxin [Thraustotheca clavata][more]
gi|673017236|ref|XP_008862579.1|2.210e-4067.68hypothetical protein H310_01292 [Aphanomyces invad... [more]
gi|813156336|ref|XP_012201517.1|4.146e-4062.62hypothetical protein SPRG_07337 [Saprolegnia paras... [more]
gi|695370920|ref|XP_009514430.1|4.402e-4065.66hypothetical protein PHYSODRAFT_308575 [Phytophtho... [more]
gi|669145258|ref|XP_008608191.1|6.540e-4065.66hypothetical protein SDRG_04301 [Saprolegnia dicli... [more]
gi|698776976|ref|XP_009821532.1|7.790e-4066.67hypothetical protein H257_00505 [Aphanomyces astac... [more]
gi|1173951318|gb|OQR99217.1|3.142e-3861.622Fe-2S ferredoxin [Achlya hypogyna][more]
gi|1214708488|gb|OWZ19766.1|3.582e-3861.472Fe-2S ferredoxin [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5013rna5013Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications