EWM25673.1, cds5001 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|585107513|gb|EWM25673.1| (2fe-2s iron-sulfur cluster binding domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 456.447 bits (1173), Expect = 2.016e-162 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query: 1 MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224
MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK
Sbjct: 1 MIPLGLRDHLRRPCAMVAPGVRAGGRSRKAMLHVASPFLRRRALACFFPSSLPPPSSWQGDRAILSSIGSTLPKSFVGDLRRRLLRRTYHGTVPRAKDVTMTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNMLGGEDEGKGGAAGGQGEPWAK 224
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|553176357|ref|XP_005852372.1| (ferredoxin, partial [Nannochloropsis gaditana CCMP526] >gi|422296156|gb|EKU23455.1| ferredoxin, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 174.096 bits (440), Expect = 6.493e-53 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query: 101 MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK 184
MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK
Sbjct: 1 MTWHVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIK 84
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1173958550|gb|OQS04894.1| (2Fe-2S ferredoxin [Thraustotheca clavata]) HSP 1 Score: 145.976 bits (367), Expect = 5.404e-41 Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+G+ VT P G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LP EEEEDMLDLAWGLT+TSRLGCQIKVT ++ ++ IP+E+NNM+
Sbjct: 44 DGKEKQVTTPVGETILDIAHSNDIELEGACGGELACSTCHCVFEPSIFANLPEICEEEEDMLDLAWGLTDTSRLGCQIKVTKEMDGMIVKIPDESNNMI 142
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|673017236|ref|XP_008862579.1| (hypothetical protein H310_01292 [Aphanomyces invadans] >gi|574481782|gb|ETW08774.1| hypothetical protein H310_01292 [Aphanomyces invadans]) HSP 1 Score: 144.821 bits (364), Expect = 2.210e-40 Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+G VTA G+T LE+AH+NDIELEGACGGELACSTCH VF P +YA LP EEEEDMLD+AWGLT+TSRLGCQIK TP ++ +TIP+ +NNML
Sbjct: 56 DGAKKEVTAAIGETFLEIAHNNDIELEGACGGELACSTCHCVFEPAVYATLPPITEEEEDMLDMAWGLTDTSRLGCQIKATPEMDGITVTIPDGSNNML 154
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|813156336|ref|XP_012201517.1| (hypothetical protein SPRG_07337 [Saprolegnia parasitica CBS 223.65] >gi|641533735|gb|KDO27708.1| hypothetical protein SPRG_07337 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 143.665 bits (361), Expect = 4.146e-40 Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 0
Query: 99 VTMTW-HVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+T T+ +G VT G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LPA EEEEDMLDLAWGLT+TSRLGCQ+KVT ++ V+ IP+E+NNM+
Sbjct: 43 ITFTFIEADGAKKDVTTAVGETILDIAHANDIELEGACGGELACSTCHCVFDPTIFATLPAICEEEEDMLDLAWGLTDTSRLGCQVKVTKDMDKMVVKIPDESNNMM 149
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|695370920|ref|XP_009514430.1| (hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae] >gi|348687341|gb|EGZ27155.1| hypothetical protein PHYSODRAFT_308575 [Phytophthora sojae]) HSP 1 Score: 142.124 bits (357), Expect = 4.402e-40 Identity = 65/99 (65.66%), Postives = 81/99 (81.82%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
EGE+ +VTA EG+TLL+VAH+ND+ELEGACGGELACSTCH+VF ++ LP EEEEDMLDLAWGLT+TSRLGCQI VT +E + IP+E +N++
Sbjct: 10 EGESTSVTAEEGQTLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQITVTKEMEGMTVRIPDEADNLM 108
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|669145258|ref|XP_008608191.1| (hypothetical protein SDRG_04301 [Saprolegnia diclina VS20] >gi|530740357|gb|EQC38599.1| hypothetical protein SDRG_04301 [Saprolegnia diclina VS20]) HSP 1 Score: 143.28 bits (360), Expect = 6.540e-40 Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+G VT G+T+L++AH NDIELEGACGGELACSTCH VF P ++A LPA EEEEDMLDLAWGLT+TSRLGCQ+KVT ++ V+ IP+E+NNM+
Sbjct: 51 DGTKKDVTTAVGETILDIAHANDIELEGACGGELACSTCHCVFDPTIFATLPAICEEEEDMLDLAWGLTDTSRLGCQVKVTKDMDKMVVKIPDESNNMM 149
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|698776976|ref|XP_009821532.1| (hypothetical protein H257_00505 [Aphanomyces astaci] >gi|574123657|gb|ETV89132.1| hypothetical protein H257_00505 [Aphanomyces astaci]) HSP 1 Score: 143.28 bits (360), Expect = 7.790e-40 Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+G V+A G+T LE+AH+NDIELEGACGGELACSTCH VF P +YA LP EEEEDMLD+AWGLT+TSRLGCQIK TP ++ +TIP+ +NNML
Sbjct: 60 DGTKKDVSAVVGETFLEIAHNNDIELEGACGGELACSTCHCVFDPAVYATLPPITEEEEDMLDMAWGLTDTSRLGCQIKATPEMDGITVTIPDGSNNML 158
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1173951318|gb|OQR99217.1| (2Fe-2S ferredoxin [Achlya hypogyna]) HSP 1 Score: 139.043 bits (349), Expect = 3.142e-38 Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 0
Query: 106 EGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+G +T G+T+L++AH ND+ELEGACGGELACSTCH +F P ++A LP EEEEDMLDLAWGL++TSRLGCQ+KVT +E V+ IP+E+NNM+
Sbjct: 51 DGSKKEITTAVGETILDIAHSNDVELEGACGGELACSTCHCIFEPAVFANLPPICEEEEDMLDLAWGLSDTSRLGCQVKVTKDMEGMVVKIPDESNNMM 149
BLAST of EWM25673.1 vs. NCBI_GenBank
Match: gi|1214708488|gb|OWZ19766.1| (2Fe-2S ferredoxin [Phytophthora megakarya]) HSP 1 Score: 137.887 bits (346), Expect = 3.582e-38 Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 0
Query: 97 KDVTMTW-HVEGEAIAVTAPEGKTLLEVAHDNDIELEGACGGELACSTCHVVFTPELYARLPAKKEEEEDMLDLAWGLTETSRLGCQIKVTPLLENAVITIPEETNNML 204
+ VT T+ EGE V A EG++LL+VAH+ND+ELEGACGGELACSTCH+VF ++ LP EEEEDMLDLAWGLT+TSRLGCQI VT +E + IP+E +N+L
Sbjct: 11 RHVTFTFVDGEGERSTVQAEEGQSLLDVAHENDVELEGACGGELACSTCHLVFEKRIFDDLPEISEEEEDMLDLAWGLTDTSRLGCQIPVTKAMEGMTVRIPDEADNLL 119 The following BLAST results are available for this feature:
BLAST of EWM25673.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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