EWM30622.1, cds50 (CDS) Nannochloropsis gaditana

Overview
NameEWM30622.1
Unique Namecds50
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:148023..148231 -
Alignment locationCM002455.1:147853..147931 -
Alignment locationCM002455.1:147540..147638 -
Alignment locationCM002455.1:147062..147412 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30622.1
Productdisulfide isomerase
Orig transcript idgnl|cribi|Naga_100671g2.1376.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:148023..148231 -
CM002455.1supercontigCM002455.1:147853..147931 -
CM002455.1supercontigCM002455.1:147540..147638 -
CM002455.1supercontigCM002455.1:147062..147412 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Homology
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|585113299|gb|EWM30622.1| (disulfide isomerase [Nannochloropsis gaditana])

HSP 1 Score: 496.123 bits (1276), Expect = 1.743e-177
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MRSPSSSKLPFFVFLFFSSSLLFWGAPLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGRVGEGGRAGRGEDGTEEGREGEEQVFEQVARALKVKASFGSVGKEALEKGKGRELFRYAEP 245
            MRSPSSSKLPFFVFLFFSSSLLFWGAPLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGRVGEGGRAGRGEDGTEEGREGEEQVFEQVARALKVKASFGSVGKEALEKGKGRELFRYAEP
Sbjct:    1 MRSPSSSKLPFFVFLFFSSSLLFWGAPLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGRVGEGGRAGRGEDGTEEGREGEEQVFEQVARALKVKASFGSVGKEALEKGKGRELFRYAEP 245          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|672285527|gb|KFG54196.1| (putative protein disulfide isomerase-related protein (provisional) [Toxoplasma gondii FOU])

HSP 1 Score: 110.153 bits (274), Expect = 2.625e-25
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:   34 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 142          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|672571624|gb|KFH10715.1| (putative protein disulfide isomerase-related protein (provisional) [Toxoplasma gondii MAS])

HSP 1 Score: 110.153 bits (274), Expect = 3.039e-25
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:   34 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 142          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|820702802|tpe|CEL78537.1| (TPA: thioredoxin, putative [Toxoplasma gondii VEG])

HSP 1 Score: 110.538 bits (275), Expect = 1.691e-24
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:  170 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 278          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|675124086|ref|XP_008883930.1| (protein disulfide isomerase-related protein (provisional), putative [Hammondia hammondi] >gi|661337590|gb|KEP65719.1| protein disulfide isomerase-related protein (provisional), putative [Hammondia hammondi])

HSP 1 Score: 110.538 bits (275), Expect = 1.708e-24
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:  179 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 287          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|1043419303|gb|OCA31934.1| (hypothetical protein XENTR_v900166002mg, partial [Xenopus tropicalis])

HSP 1 Score: 105.145 bits (261), Expect = 2.940e-24
Identity = 56/153 (36.60%), Postives = 87/153 (56.86%), Query Frame = 0
Query:   18 SSSLLFWGAPLPLSVAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAV---GDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEAL 167
            S+SLL   A LP+S  ++  D           D+F+E+ +D + WLVDFYAPWCGHC +L PV +EV   +   G  +R+GK+DAT+H+ +A +FG+ G+P++K+ +              NY G RT E +   A R++ P +  LP+ +  
Sbjct:   15 STSLL---ASLPVSALVEDLD-----------DSFKENRKD-DIWLVDFYAPWCGHCKKLEPVWNEVGIEMRSSGSPIRVGKMDATVHSSIASEFGVRGFPTIKVLK---------GDMAYNYRGPRTKEDIVEFANRVAGPLIRPLPSQQMF 143          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|922860892|gb|KOO28717.1| (protein disulfide-isomerase a3 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 109.768 bits (273), Expect = 3.821e-24
Identity = 61/154 (39.61%), Postives = 79/154 (51.30%), Query Frame = 0
Query:   32 VAIDHADLTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGR 185
            V +  A   A  VV L+  NF E V     WL+ FYAPWCGHC RL PVLDEVAAA    +  GKVD TI  RL   +G+ G+P L + Q P++           Y+G R  + L TL  R+  PA+  L +   L   +     + V F+ GR
Sbjct:    8 VTLLAATAVAKEVVVLSTANFSETV-GTKLWLIKFYAPWCGHCKRLAPVLDEVAAAAKGDISFGKVDCTIDDRLCTTYGVKGFPMLMVIQAPTR---------WVYNGRRKKDDLLTLVARMQMPAVRPLQSASDLEQAMEGEMGSPVVFMQGR 151          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|568254254|gb|ETN63240.1| (protein disulfide isomerase [Anopheles darlingi])

HSP 1 Score: 110.153 bits (274), Expect = 4.199e-24
Identity = 64/179 (35.75%), Postives = 93/179 (51.96%), Query Frame = 0
Query:   20 SLLFWGAPLPLSVAIDHAD---LTAGNVVTLTQDNFREHVEDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGD---KLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRLSAPALAHLPTPEALAGFLRSLQNASVGFVLGRVGEGGRA 192
             LL     L L++A+  A+    +   V+ LT+DNF   + D    LV+FYAPWCGHC  L P   + A  + D   K+++ KVDAT+   LA++FGI GYP+LK F+         +GS  +Y G R  + + +   + + PA   L T EA   FL+    A VGF   R  +  +A
Sbjct:    2 KLLLSAFALVLTIAVATAEEEVKSEDGVLVLTKDNFDSVIADNEYVLVEFYAPWCGHCKALAPEYAKAAKVLADKESKIKLAKVDATVEPELAEKFGIRGYPTLKFFR---------SGSQIDYTGGREQDTIVSWLEKKTGPAAKELETVEAAEEFLKENNVAVVGFFKDRESKEAKA 171          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|1008950806|gb|KYK68107.1| (putative protein disulfide isomerase-related protein (provisional), partial [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 109.768 bits (273), Expect = 5.255e-24
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:  289 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 397          
BLAST of EWM30622.1 vs. NCBI_GenBank
Match: gi|1085180626|ref|XP_002367261.2| (protein disulfide isomerase-related protein (provisional), putative [Toxoplasma gondii ME49] >gi|527308440|gb|EPT25079.1| protein disulfide isomerase-related protein (provisional), putative [Toxoplasma gondii ME49] >gi|557738499|gb|ESS34436.1| putative protein disulfide isomerase-related protein (provisional) [Toxoplasma gondii VEG] >gi|1005163739|gb|KYF49946.1| putative protein disulfide isomerase-related protein (provisional) [Toxoplasma gondii ARI])

HSP 1 Score: 109.768 bits (273), Expect = 6.394e-24
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:   43 NVVTLTQDNFREHV--EDGNTWLVDFYAPWCGHCVRLNPVLDEVAAAVGDKLRIGKVDATIHTRLAKQFGISGYPSLKIFQPPSKEGEEVAGSVSNYDGARTPEALTTLAVRL 153
            +V+ LT  NF + V  +D + W V+FYAPWCGHC  L P  +EVA A+  K+++GKVDAT+   LA  +GI G+P+LK+F  P+  GE+  G V +Y+GART EAL   A+  
Sbjct:  289 DVIELTDGNFNQLVMKDDKSVWFVEFYAPWCGHCKALAPTWEEVATALKGKVKVGKVDATVEKVLASTYGIRGFPTLKLF--PA--GEKSVGLVKDYEGARTTEALLKYAMEF 397          
The following BLAST results are available for this feature:
BLAST of EWM30622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113299|gb|EWM30622.1|1.743e-177100.00disulfide isomerase [Nannochloropsis gaditana][more]
gi|672285527|gb|KFG54196.1|2.625e-2547.79putative protein disulfide isomerase-related prote... [more]
gi|672571624|gb|KFH10715.1|3.039e-2547.79putative protein disulfide isomerase-related prote... [more]
gi|820702802|tpe|CEL78537.1|1.691e-2447.79TPA: thioredoxin, putative [Toxoplasma gondii VEG][more]
gi|675124086|ref|XP_008883930.1|1.708e-2447.79protein disulfide isomerase-related protein (provi... [more]
gi|1043419303|gb|OCA31934.1|2.940e-2436.60hypothetical protein XENTR_v900166002mg, partial [... [more]
gi|922860892|gb|KOO28717.1|3.821e-2439.61protein disulfide-isomerase a3 [Chrysochromulina s... [more]
gi|568254254|gb|ETN63240.1|4.199e-2435.75protein disulfide isomerase [Anopheles darlingi][more]
gi|1008950806|gb|KYK68107.1|5.255e-2447.79putative protein disulfide isomerase-related prote... [more]
gi|1085180626|ref|XP_002367261.2|6.394e-2447.79protein disulfide isomerase-related protein (provi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna50rna50Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications