EWM25689.1, cds4979 (CDS) Nannochloropsis gaditana

Overview
NameEWM25689.1
Unique Namecds4979
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:859556..859709 -
Alignment locationCM002464.1:857671..859406 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25689.1
Productn-terminal domain-containing protein
Orig transcript idgnl|cribi|Naga_100279g2.10050.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:859556..859709 -
CM002464.1supercontigCM002464.1:857671..859406 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0065009regulation of molecular function
GO:0007049cell cycle
GO:0006464cellular protein modification process
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0019901protein kinase binding
Vocabulary: INTERPRO
TermDefinition
IPR013763Cyclin-like
IPR013922Cyclin_PHO80-like
Homology
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|585107543|gb|EWM25689.1| (n-terminal domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1297.72 bits (3357), Expect = 0.000e+0
Identity = 629/629 (100.00%), Postives = 629/629 (100.00%), Query Frame = 0
Query:    1 MRKGRMAAPLAHTPPFPAAQYPCANEGGGGQDGNSANNLPYFGQHTDLNSAEYCKRQRVYMSPGLWAELDADPQRGVALMDLAAAQQAQEAEQFRLRQQQQPQREPQGHDGSKGGYLEAQRGHMQHAWVAEGAGETAMDTGDEGRDKEEDVARFFADSPPAATATRADFPSTRTNISTTGQARAQDDWPMPTPPLPPKSGRSGMEPSREELSAPPPGGHIRSSKTTDDVVSTIYRPLLMTGTTPNSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLELCSDSFGLCIRQASSNLSPVSANGSSSNSSHRSSVGSSAAAKATGSLPQPHSPVGPFAPGERATAAGGPLRGIPALMASSTSVLPTPPSSHSLAARHASSISTASSSTASSSSRFRKPRPVTSDLARRSPWTPLPQSPSPTYEDITYTPKGRYVQS 629
            MRKGRMAAPLAHTPPFPAAQYPCANEGGGGQDGNSANNLPYFGQHTDLNSAEYCKRQRVYMSPGLWAELDADPQRGVALMDLAAAQQAQEAEQFRLRQQQQPQREPQGHDGSKGGYLEAQRGHMQHAWVAEGAGETAMDTGDEGRDKEEDVARFFADSPPAATATRADFPSTRTNISTTGQARAQDDWPMPTPPLPPKSGRSGMEPSREELSAPPPGGHIRSSKTTDDVVSTIYRPLLMTGTTPNSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLELCSDSFGLCIRQASSNLSPVSANGSSSNSSHRSSVGSSAAAKATGSLPQPHSPVGPFAPGERATAAGGPLRGIPALMASSTSVLPTPPSSHSLAARHASSISTASSSTASSSSRFRKPRPVTSDLARRSPWTPLPQSPSPTYEDITYTPKGRYVQS
Sbjct:    1 MRKGRMAAPLAHTPPFPAAQYPCANEGGGGQDGNSANNLPYFGQHTDLNSAEYCKRQRVYMSPGLWAELDADPQRGVALMDLAAAQQAQEAEQFRLRQQQQPQREPQGHDGSKGGYLEAQRGHMQHAWVAEGAGETAMDTGDEGRDKEEDVARFFADSPPAATATRADFPSTRTNISTTGQARAQDDWPMPTPPLPPKSGRSGMEPSREELSAPPPGGHIRSSKTTDDVVSTIYRPLLMTGTTPNSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLELCSDSFGLCIRQASSNLSPVSANGSSSNSSHRSSVGSSAAAKATGSLPQPHSPVGPFAPGERATAAGGPLRGIPALMASSTSVLPTPPSSHSLAARHASSISTASSSTASSSSRFRKPRPVTSDLARRSPWTPLPQSPSPTYEDITYTPKGRYVQS 629          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|118386187|ref|XP_001026214.1| (amine-terminal domain cyclin [Tetrahymena thermophila SB210] >gi|89307981|gb|EAS05969.1| amine-terminal domain cyclin [Tetrahymena thermophila SB210])

HSP 1 Score: 154.451 bits (389), Expect = 3.549e-39
Identity = 86/228 (37.72%), Postives = 132/228 (57.89%), Query Frame = 0
Query:  246 STSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
            +++++F R+T  +P+   II  +A++L  QM  D ++        D    F     +        E   A+  + P+         V+ I+ F++ +++ A+FSPEC II LVYINR+I+ T LPL+  NWR ++L +LL+AQKVWDD+ ++ + F+   P F  E I  +E+KFLELLQY  TV  ALY +YYFELRALF+          +FPL P+ + Q ++LE
Sbjct:   12 TSNTLFIRHTISSPNVKSIIQAVATILHSQMHEDFQSGKEVPKGSD-LHFFSEEKYIEEKPEEFDEARRALLRETPS---------VDNIYEFMKALYECAKFSPECCIICLVYINRLIAFTGLPLYPTNWRPLILCSLLVAQKVWDDKYLSNADFAFIYPFFVTEEINALEQKFLELLQYNVTVKSALYAKYYFELRALFKN-------ESEFPLTPLDVDQEKELE 222          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|954188024|gb|KRX00851.1| (Cyclin-like protein [Pseudocohnilembus persalinus])

HSP 1 Score: 147.517 bits (371), Expect = 1.179e-36
Identity = 85/233 (36.48%), Postives = 129/233 (55.36%), Query Frame = 0
Query:  241 GTTPNSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
                ++T S++  +   +P+   II  ++++L  QML D+++        D +  F     +        E   A+  + P+         V+ I+ FI+ ++  A+FSPEC II LVYINR+I+ T +PL+  NWR ++L +LL+AQKVWDD+ ++ + F+   P F  E I  +E KFLELLQY+ TV  ALY +YYFELRALF+          +FPL P+    A  LE
Sbjct:    8 NVCSSTTGSMYVTSLITSPNVKSIIQAVSTILHSQMLEDQDSGKDIPKNSDLYF-FSEEKYIEEKPEEFDEARKALLRETPS---------VDNIYEFIKALYDCAQFSPECCIICLVYINRLIAFTQMPLYPTNWRPLILCSLLVAQKVWDDKFLSNADFAFIYPFFVTEEINRLEAKFLELLQYKVTVKSALYAKYYFELRALFKN-------QEEFPLVPLDQQSAALLE 223          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|145549069|ref|XP_001460214.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124428043|emb|CAK92817.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 147.517 bits (371), Expect = 1.199e-36
Identity = 86/235 (36.60%), Postives = 131/235 (55.74%), Query Frame = 0
Query:  245 NSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEV------TVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
            N+TSS++ ++T  NP+   II  ++++L  QM  D+E                  +P  +      E     E   P E   + ++      +V+ I+ F++ ++  A+FSPEC II LVYINR+I+ T L L+  NWR ++L +LL+AQKVWDD+ ++ + F+   P F  + I  +E KFLELLQY  TV   LY +YYFELRALF+         ++FPL P+ + Q+  LE
Sbjct:   13 NTTSSMYIKSTISNPNVKSIIQAVSTILHSQMQEDQEQGKQ--------------IPKTSELYFFSEEKYIEEK--PEEFDEQRKLLLREPPSVDNIYEFMKALYDCAQFSPECCIICLVYINRLIAFTGLTLNPTNWRPLLLSSLLVAQKVWDDKYLSNADFAFIYPFFTTQEINKLEAKFLELLQYNVTVKGDLYAKYYFELRALFKG-------DQEFPLYPLDVTQSANLE 224          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|471223987|ref|XP_004030756.1| (n-terminal domain protein [Ichthyophthirius multifiliis] >gi|340502876|gb|EGR29520.1| n-terminal domain protein [Ichthyophthirius multifiliis])

HSP 1 Score: 145.976 bits (367), Expect = 1.598e-36
Identity = 71/144 (49.31%), Postives = 104/144 (72.22%), Query Frame = 0
Query:  331 TVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLEL 474
            +V+ I+ F++ +++ ++FSPEC II LVYINR+I+ T +PL+  NWR ++L +LL+AQKVWDD+ ++ + F+   P F  + I  +E++FLELLQY  TV  ALY +YYFELRALF+   EQE     FPL P+ + +A+KLEL
Sbjct:   46 SVDNIYEFMKALYECSKFSPECCIICLVYINRLIAFTGMPLYPTNWRPLILCSLLVAQKVWDDKYLSNADFAFIYPFFVTDEINQLEQRFLELLQYNVTVKSALYAKYYFELRALFKN--EQE-----FPLTPLDVDEAQKLEL 182          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|403353668|gb|EJY76376.1| (Cyclin, N-terminal domain-containing protein (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 142.124 bits (357), Expect = 1.138e-34
Identity = 83/214 (38.79%), Postives = 123/214 (57.48%), Query Frame = 0
Query:  260 HADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
            + D I+  +A++L  Q+L D+ ++       D F   E    +   EA   +  +A+  + P+         VE I  F++ ++  A+FS EC II+LVYINR+I+ T +PL   NWR +VL +LL+AQKVWDDR ++ + F+   P F  E I  +E+KFLEL+QY  TV   LY +YYFELR LF      +   +DFPL+ +T   A+ LE
Sbjct:   22 NVDLILNAVATILHSQILEDQASSKIIAPGSDVFFFSEEKYILEKPEAFD-KARIALLRESPS---------VENIFDFMKALYDCAQFSSECCIISLVYINRIIAFTEMPLQPTNWRPLVLCSLLVAQKVWDDRYLSNADFAFIYPFFVTEEINKLEQKFLELIQYNVTVKSNLYAKYYFELRGLF------KDNEKDFPLQQITEGDAKLLE 219          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|675133126|ref|XP_008888450.1| (cyclin, N-terminal domain-containing protein [Hammondia hammondi] >gi|661332784|gb|KEP60952.1| cyclin, N-terminal domain-containing protein [Hammondia hammondi])

HSP 1 Score: 139.043 bits (349), Expect = 1.355e-33
Identity = 78/208 (37.50%), Postives = 124/208 (59.62%), Query Frame = 0
Query:  248 SSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDK--FRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQE 453
            S+    +T   P+  ++I  +A++LQ Q+  D E     +A+ +K  +R F+     A  ++ SGE   AM      + QGE   TVEEI  FI  +++ A +SPECN++AL++INR+I+ + +PL A NWR +V +AL++AQKVWDD+ +  +SF+   P F +E +  +E  FL LL +   V  + Y +YYFELR++ +    QE
Sbjct:   22 SNWMLTSTVSQPNVQKMITAVAAILQDQISVDME----KRAVEEKPEWRVFDED---AYCDSNSGE--TAMRA-SVAKHQGEACPTVEEIRDFIGVLYEAAEYSPECNVLALLFINRLIAFSGMPLRASNWRPLVFIALIVAQKVWDDQVLTNASFAYLYPFFTVEEVNKMEAAFLSLLHFEVVVKPSTYAKYYFELRSMLQDPTSQE 219          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|1134880967|gb|OMJ78621.1| (hypothetical protein SteCoe_21546 [Stentor coeruleus])

HSP 1 Score: 137.887 bits (346), Expect = 3.071e-33
Identity = 77/216 (35.65%), Postives = 120/216 (55.56%), Query Frame = 0
Query:  258 NPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
            NP+   I+  +++++  QML D       Q+  D F  F     +        E   A+  + P+         V++I  F+  +++ A+FSPEC II LVYINR+I+ T LPL   NWR ++L + L+ QKVWDDR ++ + F+   P F  E I  +E+KFLEL+ Y  TV   LY +YYFELR L+ +       + +FP++P+   +A++LE
Sbjct:   30 NPNVRSILQSVSTIIHSQMLEDSSLGREIQSTSDLFY-FSEEKYIREHPEMFDEQRRALLRKTPS---------VDDIFEFMRALYECAQFSPECCIICLVYINRLIAFTGLPLSPTNWRPIILCSFLIGQKVWDDRYLSNADFAYIYPFFSTEEINRLEKKFLELINYSVTVKATLYAKYYFELRGLYNE-------ANNFPIEPIHNEKAKELE 228          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|1134871473|gb|OMJ69773.1| (hypothetical protein SteCoe_32408 [Stentor coeruleus])

HSP 1 Score: 137.887 bits (346), Expect = 3.494e-33
Identity = 77/216 (35.65%), Postives = 120/216 (55.56%), Query Frame = 0
Query:  258 NPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLE 473
            NP+   I+  +++++  QML D       Q+  D F  F     +        E   A+  + P+         V++I  F+  +++ A+FSPEC II LVYINR+I+ T LPL   NWR ++L + L+ QKVWDDR ++ + F+   P F  E I  +E+KFLEL+ Y  TV   LY +YYFELR L+ +       + +FP++P+   +A++LE
Sbjct:   30 NPNVRSILQSVSTIIHSQMLEDSSLGREIQSTSDLFY-FSEEKYIREHPEMFDEQRRALLRKTPS---------VDDIFEFMRALYECAQFSPECCIICLVYINRLIAFTGLPLSPTNWRPIILCSFLIGQKVWDDRYLSNADFAYIYPFFSTEEINKLEKKFLELINYSVTVKATLYAKYYFELRGLYNE-------ANNFPIEPIHNDKAKELE 228          
BLAST of EWM25689.1 vs. NCBI_GenBank
Match: gi|514695859|ref|XP_004995500.1| (CCNYL1 protein [Salpingoeca rosetta] >gi|326437566|gb|EGD83136.1| CCNYL1 protein [Salpingoeca rosetta])

HSP 1 Score: 139.813 bits (351), Expect = 3.860e-33
Identity = 92/273 (33.70%), Postives = 139/273 (50.92%), Query Frame = 0
Query:  206 PSREELSAPPPGGHIRSSKTTDDVVSTIYRPL-LMTGTTPNSTSSIFCRNTACNPHADQIILCMASVLQVQMLHDKEAANTNQALRDKFRCFEPPLPVATGEAGSGEGVVAMEGQGPTESQGEEEVTVEEIHCFIEGIFKRARFSPECNIIALVYINRVISTTSLPLHARNWRAVVLVALLLAQKVWDDRCIALSSFSPHLPDFPLERIRLVERKFLELLQYRATVTQALYTRYYFELRALFEKLLEQESISRDFPLKPMTIWQARKLELCSD 477
            P   E  +PP     RS+     V     +PL L      NSTS++F  +T  +P+ ++ + C+A  L   ++ D    +  +   +KF     P+        +         + P+E++         I+ F+  +F  A+ + EC II LVY+NR+I+ TSL LHA  W+ VVL A+LLA KVWDD+ +    F   LP   +E +  +ER FLE+L +   V   +Y +YYFELRAL EK        +DFPLKP+   QA++LE  S+
Sbjct:   47 PLSSEAPSPPSRKLSRSTSRRFSVAEDDLQPLELANSRKFNSTSTLFVDSTVSSPNLEETLRCVALALSY-VVEDGHKQDNPRLFSEKFDEKRHPITDRVRRDYAS--------RIPSENR---------IYKFMFQLFNSAQLTAECAIITLVYVNRLIAYTSLTLHASTWKRVVLGAILLASKVWDDQAVWNVDFCSMLPSVAVEDMNDLERTFLEMLDFNIDVDSCVYAKYYFELRALAEKF------EKDFPLKPLNKDQAKRLEALSE 295          
The following BLAST results are available for this feature:
BLAST of EWM25689.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107543|gb|EWM25689.1|0.000e+0100.00n-terminal domain-containing protein [Nannochlorop... [more]
gi|118386187|ref|XP_001026214.1|3.549e-3937.72amine-terminal domain cyclin [Tetrahymena thermoph... [more]
gi|954188024|gb|KRX00851.1|1.179e-3636.48Cyclin-like protein [Pseudocohnilembus persalinus][more]
gi|145549069|ref|XP_001460214.1|1.199e-3636.60hypothetical protein [Paramecium tetraurelia strai... [more]
gi|471223987|ref|XP_004030756.1|1.598e-3649.31n-terminal domain protein [Ichthyophthirius multif... [more]
gi|403353668|gb|EJY76376.1|1.138e-3438.79Cyclin, N-terminal domain-containing protein (macr... [more]
gi|675133126|ref|XP_008888450.1|1.355e-3337.50cyclin, N-terminal domain-containing protein [Hamm... [more]
gi|1134880967|gb|OMJ78621.1|3.071e-3335.65hypothetical protein SteCoe_21546 [Stentor coerule... [more]
gi|1134871473|gb|OMJ69773.1|3.494e-3335.65hypothetical protein SteCoe_32408 [Stentor coerule... [more]
gi|514695859|ref|XP_004995500.1|3.860e-3333.70CCNYL1 protein [Salpingoeca rosetta] >gi|326437566... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4991rna4991Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications