EWM25700.1, cds4976 (CDS) Nannochloropsis gaditana

Overview
NameEWM25700.1
Unique Namecds4976
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:853724..853889 -
Alignment locationCM002464.1:853242..853513 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25700.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100222g8.2413.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:853724..853889 -
CM002464.1supercontigCM002464.1:853242..853513 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|585107556|gb|EWM25700.1| (hypothetical protein Naga_100222g8 [Nannochloropsis gaditana])

HSP 1 Score: 295.819 bits (756), Expect = 1.844e-101
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query:    1 MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH 145
            MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH
Sbjct:    1 MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH 145          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|953498838|emb|CEG39888.1| (hypothetical protein PHALS_10116 [Plasmopara halstedii])

HSP 1 Score: 68.5514 bits (166), Expect = 5.605e-12
Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0
Query:   44 RAPSLAFTRP--TTGRRFLGSGGGH------GDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHG--HHGGGAHFKDVDFDGPSELEEAE 139
            RA S+   R   ++GRR + S  GH      G HFHVS +H+  A    T+ W+W+ WR   DG  VLGL HPWD HG H   H  G +    +  DG  + E +E
Sbjct:    2 RAASILARRLALSSGRRAVSSSHGHSHNYPHGMHFHVSAVHKNLALAYGTMLWLWVFWRAKHDGLAVLGLEHPWDHHGHHDETHAEGASKGSYLLVDGKIQYERSE 107          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|695414080|ref|XP_009526209.1| (hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae] >gi|348677334|gb|EGZ17151.1| hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae])

HSP 1 Score: 65.855 bits (159), Expect = 7.297e-11
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0
Query:   54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
             +GRR + S  GHG       HFHVS +H+  A    T+ W+W+ WR  +DG VVLGL HPWD
Sbjct:   14 ASGRRAMSSAHGHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGRVVLGLEHPWD 76          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|675168693|ref|XP_008893231.1| (hypothetical protein PPTG_01614 [Phytophthora parasitica INRA-310] >gi|566022250|gb|ETI45161.1| hypothetical protein F443_10146 [Phytophthora parasitica P1569] >gi|567959561|gb|ETK85130.1| hypothetical protein L915_09927 [Phytophthora parasitica] >gi|567988270|gb|ETL38549.1| hypothetical protein L916_09840 [Phytophthora parasitica] >gi|568017498|gb|ETL91675.1| hypothetical protein L917_09757 [Phytophthora parasitica] >gi|568047913|gb|ETM44981.1| hypothetical protein L914_09812 [Phytophthora parasitica] >gi|568106807|gb|ETN21437.1| hypothetical protein PPTG_01614 [Phytophthora parasitica INRA-310] >gi|570325869|gb|ETO73817.1| hypothetical protein F444_10243 [Phytophthora parasitica P1976] >gi|570949713|gb|ETP14970.1| hypothetical protein F441_10087 [Phytophthora parasitica CJ01A1] >gi|570983179|gb|ETP43055.1| hypothetical protein F442_10051 [Phytophthora parasitica P10297] >gi|970640862|gb|KUF83236.1| hypothetical protein AM587_10016376 [Phytophthora nicotianae] >gi|970643813|gb|KUF84919.1| hypothetical protein AM587_10001783 [Phytophthora nicotianae] >gi|970660121|gb|KUF97700.1| hypothetical protein AM588_10010702 [Phytophthora nicotianae])

HSP 1 Score: 65.0846 bits (157), Expect = 1.337e-10
Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0
Query:   54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD-GHGDHGHHGGGAHFKD-VDFDGPSELEEAE 139
             +GRR + S  GHG       HFHVS +H+  A    T+ W+W+ WR  +DG  VLG  HPWD GH  H  H   ++  + V  DG  + E +E
Sbjct:   14 VSGRRAMSSAHGHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWDHGHSHHDEHAETSNQGNYVLVDGKLKYERSE 107          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1173957944|gb|OQS04379.1| (hypothetical protein THRCLA_20903 [Thraustotheca clavata])

HSP 1 Score: 63.1586 bits (152), Expect = 3.441e-10
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0
Query:   66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
            HG HFHVS +H+  AT   T+ W+W+ +R  EDGAVVLG  HPWD
Sbjct:   31 HGMHFHVSSVHKNLATAFGTLTWLWVFYRAKEDGAVVLGFEHPWD 75          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1214712886|gb|OWZ23804.1| (hypothetical protein PHMEG_0001263 [Phytophthora megakarya])

HSP 1 Score: 60.077 bits (144), Expect = 8.647e-9
Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0
Query:   54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
             +GRR + S   HG       HFHVS +H+  A    T+ W+W+ WR  +DG  VLG  HPWD
Sbjct:   14 ASGRRAMSSSHSHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWD 76          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1173942226|gb|OQR91260.1| (hypothetical protein ACHHYP_04842 [Achlya hypogyna])

HSP 1 Score: 58.5362 bits (140), Expect = 1.803e-8
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0
Query:   66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
            HG HFHV  +H+   T   T+ W+W+ +R  EDGAVVLG  HPWD
Sbjct:   30 HGMHFHVDPVHKALGTAFGTLTWLWIFYRAKEDGAVVLGFEHPWD 74          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|301120478|ref|XP_002907966.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102997|gb|EEY61049.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 58.151 bits (139), Expect = 5.298e-8
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0
Query:   54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPW 109
             +GRR + S  GHG       HFHVS +H+  A    T+ W+W+ WR  +DG  +LG  HPW
Sbjct:   14 ASGRRAMSSAHGHGHSYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLALLGFEHPW 75          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|669151934|ref|XP_008611529.1| (hypothetical protein SDRG_07473 [Saprolegnia diclina VS20] >gi|813206122|ref|XP_012210110.1| hypothetical protein SPRG_14786 [Saprolegnia parasitica CBS 223.65] >gi|530737003|gb|EQC35245.1| hypothetical protein SDRG_07473 [Saprolegnia diclina VS20] >gi|641524617|gb|KDO19175.1| hypothetical protein SPRG_14786 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 54.6842 bits (130), Expect = 4.772e-7
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0
Query:   66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPW 109
            HG HFHV  +H+   T   T+ W+W+ +R  EDGAVVLG  HPW
Sbjct:   30 HGMHFHVDPVHKALGTAFGTLTWLWIFYRAKEDGAVVLGWEHPW 73          
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|224083231|ref|XP_002306968.1| (hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|566173456|ref|XP_006383762.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|222856417|gb|EEE93964.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|550339823|gb|ERP61559.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa])

HSP 1 Score: 53.5286 bits (127), Expect = 5.965e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0
Query:   83 MTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGG 120
            +  V W W+L+R  +DG VVLG RHPW+GHGDHGH  G
Sbjct:   30 LCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGDHGHESG 67          
The following BLAST results are available for this feature:
BLAST of EWM25700.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107556|gb|EWM25700.1|1.844e-101100.00hypothetical protein Naga_100222g8 [Nannochloropsi... [more]
gi|953498838|emb|CEG39888.1|5.605e-1239.62hypothetical protein PHALS_10116 [Plasmopara halst... [more]
gi|695414080|ref|XP_009526209.1|7.297e-1147.62hypothetical protein PHYSODRAFT_351118 [Phytophtho... [more]
gi|675168693|ref|XP_008893231.1|1.337e-1039.36hypothetical protein PPTG_01614 [Phytophthora para... [more]
gi|1173957944|gb|OQS04379.1|3.441e-1057.78hypothetical protein THRCLA_20903 [Thraustotheca c... [more]
gi|1214712886|gb|OWZ23804.1|8.647e-942.86hypothetical protein PHMEG_0001263 [Phytophthora m... [more]
gi|1173942226|gb|OQR91260.1|1.803e-853.33hypothetical protein ACHHYP_04842 [Achlya hypogyna... [more]
gi|301120478|ref|XP_002907966.1|5.298e-841.94conserved hypothetical protein [Phytophthora infes... [more]
gi|669151934|ref|XP_008611529.1|4.772e-752.27hypothetical protein SDRG_07473 [Saprolegnia dicli... [more]
gi|224083231|ref|XP_002306968.1|5.965e-760.53hypothetical protein POPTR_0005s26990g [Populus tr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4988rna4988Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications