EWM25700.1, cds4976 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|585107556|gb|EWM25700.1| (hypothetical protein Naga_100222g8 [Nannochloropsis gaditana]) HSP 1 Score: 295.819 bits (756), Expect = 1.844e-101 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH 145
MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH
Sbjct: 1 MQSSRSHKGERSSLLRTRRGTLTKPPSDMLGRIATTFSRQVPRRAPSLAFTRPTTGRRFLGSGGGHGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGGGAHFKDVDFDGPSELEEAEEDDGGH 145
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|953498838|emb|CEG39888.1| (hypothetical protein PHALS_10116 [Plasmopara halstedii]) HSP 1 Score: 68.5514 bits (166), Expect = 5.605e-12 Identity = 42/106 (39.62%), Postives = 55/106 (51.89%), Query Frame = 0
Query: 44 RAPSLAFTRP--TTGRRFLGSGGGH------GDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHG--HHGGGAHFKDVDFDGPSELEEAE 139
RA S+ R ++GRR + S GH G HFHVS +H+ A T+ W+W+ WR DG VLGL HPWD HG H H G + + DG + E +E
Sbjct: 2 RAASILARRLALSSGRRAVSSSHGHSHNYPHGMHFHVSAVHKNLALAYGTMLWLWVFWRAKHDGLAVLGLEHPWDHHGHHDETHAEGASKGSYLLVDGKIQYERSE 107
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|695414080|ref|XP_009526209.1| (hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae] >gi|348677334|gb|EGZ17151.1| hypothetical protein PHYSODRAFT_351118 [Phytophthora sojae]) HSP 1 Score: 65.855 bits (159), Expect = 7.297e-11 Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 0
Query: 54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
+GRR + S GHG HFHVS +H+ A T+ W+W+ WR +DG VVLGL HPWD
Sbjct: 14 ASGRRAMSSAHGHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGRVVLGLEHPWD 76
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|675168693|ref|XP_008893231.1| (hypothetical protein PPTG_01614 [Phytophthora parasitica INRA-310] >gi|566022250|gb|ETI45161.1| hypothetical protein F443_10146 [Phytophthora parasitica P1569] >gi|567959561|gb|ETK85130.1| hypothetical protein L915_09927 [Phytophthora parasitica] >gi|567988270|gb|ETL38549.1| hypothetical protein L916_09840 [Phytophthora parasitica] >gi|568017498|gb|ETL91675.1| hypothetical protein L917_09757 [Phytophthora parasitica] >gi|568047913|gb|ETM44981.1| hypothetical protein L914_09812 [Phytophthora parasitica] >gi|568106807|gb|ETN21437.1| hypothetical protein PPTG_01614 [Phytophthora parasitica INRA-310] >gi|570325869|gb|ETO73817.1| hypothetical protein F444_10243 [Phytophthora parasitica P1976] >gi|570949713|gb|ETP14970.1| hypothetical protein F441_10087 [Phytophthora parasitica CJ01A1] >gi|570983179|gb|ETP43055.1| hypothetical protein F442_10051 [Phytophthora parasitica P10297] >gi|970640862|gb|KUF83236.1| hypothetical protein AM587_10016376 [Phytophthora nicotianae] >gi|970643813|gb|KUF84919.1| hypothetical protein AM587_10001783 [Phytophthora nicotianae] >gi|970660121|gb|KUF97700.1| hypothetical protein AM588_10010702 [Phytophthora nicotianae]) HSP 1 Score: 65.0846 bits (157), Expect = 1.337e-10 Identity = 37/94 (39.36%), Postives = 50/94 (53.19%), Query Frame = 0
Query: 54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD-GHGDHGHHGGGAHFKD-VDFDGPSELEEAE 139
+GRR + S GHG HFHVS +H+ A T+ W+W+ WR +DG VLG HPWD GH H H ++ + V DG + E +E
Sbjct: 14 VSGRRAMSSAHGHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWDHGHSHHDEHAETSNQGNYVLVDGKLKYERSE 107
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1173957944|gb|OQS04379.1| (hypothetical protein THRCLA_20903 [Thraustotheca clavata]) HSP 1 Score: 63.1586 bits (152), Expect = 3.441e-10 Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0
Query: 66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
HG HFHVS +H+ AT T+ W+W+ +R EDGAVVLG HPWD
Sbjct: 31 HGMHFHVSSVHKNLATAFGTLTWLWVFYRAKEDGAVVLGFEHPWD 75
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1214712886|gb|OWZ23804.1| (hypothetical protein PHMEG_0001263 [Phytophthora megakarya]) HSP 1 Score: 60.077 bits (144), Expect = 8.647e-9 Identity = 27/63 (42.86%), Postives = 35/63 (55.56%), Query Frame = 0
Query: 54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
+GRR + S HG HFHVS +H+ A T+ W+W+ WR +DG VLG HPWD
Sbjct: 14 ASGRRAMSSSHSHGHNYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLAVLGFEHPWD 76
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|1173942226|gb|OQR91260.1| (hypothetical protein ACHHYP_04842 [Achlya hypogyna]) HSP 1 Score: 58.5362 bits (140), Expect = 1.803e-8 Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 0
Query: 66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPWD 110
HG HFHV +H+ T T+ W+W+ +R EDGAVVLG HPWD
Sbjct: 30 HGMHFHVDPVHKALGTAFGTLTWLWIFYRAKEDGAVVLGFEHPWD 74
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|301120478|ref|XP_002907966.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262102997|gb|EEY61049.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 58.151 bits (139), Expect = 5.298e-8 Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0
Query: 54 TTGRRFLGSGGGHGD------HFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPW 109
+GRR + S GHG HFHVS +H+ A T+ W+W+ WR +DG +LG HPW
Sbjct: 14 ASGRRAMSSAHGHGHSYPHGMHFHVSPVHKNLALAYGTMLWLWVFWRAKQDGLALLGFEHPW 75
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|669151934|ref|XP_008611529.1| (hypothetical protein SDRG_07473 [Saprolegnia diclina VS20] >gi|813206122|ref|XP_012210110.1| hypothetical protein SPRG_14786 [Saprolegnia parasitica CBS 223.65] >gi|530737003|gb|EQC35245.1| hypothetical protein SDRG_07473 [Saprolegnia diclina VS20] >gi|641524617|gb|KDO19175.1| hypothetical protein SPRG_14786 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 54.6842 bits (130), Expect = 4.772e-7 Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0
Query: 66 HGDHFHVSEMHQKAATVMTTVCWVWMLWRCYEDGAVVLGLRHPW 109
HG HFHV +H+ T T+ W+W+ +R EDGAVVLG HPW
Sbjct: 30 HGMHFHVDPVHKALGTAFGTLTWLWIFYRAKEDGAVVLGWEHPW 73
BLAST of EWM25700.1 vs. NCBI_GenBank
Match: gi|224083231|ref|XP_002306968.1| (hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|566173456|ref|XP_006383762.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|222856417|gb|EEE93964.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa] >gi|550339823|gb|ERP61559.1| hypothetical protein POPTR_0005s26990g [Populus trichocarpa]) HSP 1 Score: 53.5286 bits (127), Expect = 5.965e-7 Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0
Query: 83 MTTVCWVWMLWRCYEDGAVVLGLRHPWDGHGDHGHHGG 120
+ V W W+L+R +DG VVLG RHPW+GHGDHGH G
Sbjct: 30 LCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGDHGHESG 67 The following BLAST results are available for this feature:
BLAST of EWM25700.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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