EWM25737.1, cds4941 (CDS) Nannochloropsis gaditana

Overview
NameEWM25737.1
Unique Namecds4941
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:755573..756103 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25737.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100087g9.1117.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:755573..756103 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25737.1 vs. NCBI_GenBank
Match: gi|585107599|gb|EWM25737.1| (hypothetical protein Naga_100087g9 [Nannochloropsis gaditana])

HSP 1 Score: 361.303 bits (926), Expect = 1.914e-126
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MPPITLNAGYFALLLALLLPTDAFVSSPVLHGVRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAELR 176
            MPPITLNAGYFALLLALLLPTDAFVSSPVLHGVRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAELR
Sbjct:    1 MPPITLNAGYFALLLALLLPTDAFVSSPVLHGVRKSADCRVWMSSAAVPPATEASPAAAAPTRPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAELR 176          
BLAST of EWM25737.1 vs. NCBI_GenBank
Match: gi|298711500|emb|CBJ26588.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.6633 bits (226), Expect = 1.338e-20
Identity = 46/111 (41.44%), Postives = 69/111 (62.16%), Query Frame = 0
Query:   63 RPRREINILQVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAA 173
            + +R I +  V E+  GY++ V+VKNFK  T H ++ SKE   +   LAGK   ++ + D    V K+++ KG+ L  TEGMI+A VFP+NYF++ QL+ F DD  E + A
Sbjct:   16 KKKRSITVQFVQETPAGYISVVDVKNFKATTNHRIVMSKEQLAQYSELAGK---KVEVGDLMGYVMKYMLDKGIKLDNTEGMIEASVFPVNYFTLKQLSYFHDDVEEKIVA 123          
BLAST of EWM25737.1 vs. NCBI_GenBank
Match: gi|545709203|ref|XP_005706912.1| (hypothetical protein Gasu_22990 [Galdieria sulphuraria] >gi|452823381|gb|EME30392.1| hypothetical protein Gasu_22990 [Galdieria sulphuraria])

HSP 1 Score: 72.4034 bits (176), Expect = 1.202e-12
Identity = 39/105 (37.14%), Postives = 61/105 (58.10%), Query Frame = 0
Query:   72 QVIESNGGYMAKVEVKNFKDVTEHTVITSKELYQETCA-LAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDDTVEGVAAEL 175
            +  ++NGG+M +VEV + + ++ HTV+  K L++E  A    KTP+ + I      VF ++I + + L  T+G+ D+  FPINYFSV QL  F  D  E +   L
Sbjct:   85 KTFKTNGGWMFEVEVNDSRQLSRHTVLLGKGLFEELVAEHTDKTPETVIIT-----VFNYLIERKVVLKNTQGVFDSSQFPINYFSVRQLFYFYPDCKEYLKQSL 184          
BLAST of EWM25737.1 vs. NCBI_GenBank
Match: gi|873219174|emb|CEM38234.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 60.8474 bits (146), Expect = 9.371e-8
Identity = 35/100 (35.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   68 INILQVIESNGGYMAKVEVK-NFKDVTEHTVITSKELYQETCALAGKTPDELPIEDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQLAIFLDD 166
            I +  V E NGG+M+ V +       T+HTV     LY +    A +  D   +  Y   +FKF++ + + +  TEGMID+ VFP+NYFS +Q+    +D
Sbjct:  465 IKVEYVDEWNGGWMSDVVIDYGGGKTTKHTVTVGFFLYNDVVTKANREVDPETLVKY---IFKFMLDRKMSMDNTEGMIDSSVFPVNYFSAAQVEYVHED 561          
BLAST of EWM25737.1 vs. NCBI_GenBank
Match: gi|1189382048|gb|OSX69631.1| (hypothetical protein BU14_1330s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 56.9954 bits (136), Expect = 5.443e-7
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   65 RREINILQVIESNGGYMAKVEVKNF--KDVTEHTVITSKELYQETCALAGKTPDELPI--EDYYRGVFKFIIGKGLPLTRTEGMIDAGVFPINYFSVSQL 160
            +R  +I  V E+ GG++ ++   N   K  T HT+I SKE      A+   T D  P+  E   + +  +++  G   T TEGMI++ +FP+NYF++ Q 
Sbjct:   70 QRFSDIKSVNETGGGWIVQLVATNGAKKPPTRHTIIISKE------AMTRMTADGTPVAPEQLAKYIMSYLMTSGFSTTNTEGMIESDIFPVNYFAIRQF 163          
The following BLAST results are available for this feature:
BLAST of EWM25737.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585107599|gb|EWM25737.1|1.914e-126100.00hypothetical protein Naga_100087g9 [Nannochloropsi... [more]
gi|298711500|emb|CBJ26588.1|1.338e-2041.44expressed unknown protein [Ectocarpus siliculosus][more]
gi|545709203|ref|XP_005706912.1|1.202e-1237.14hypothetical protein Gasu_22990 [Galdieria sulphur... [more]
gi|873219174|emb|CEM38234.1|9.371e-835.00unnamed protein product [Vitrella brassicaformis C... [more]
gi|1189382048|gb|OSX69631.1|5.443e-733.00hypothetical protein BU14_1330s0001, partial [Porp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4953rna4953Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications