EWM30191.1, cds494 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|585112849|gb|EWM30191.1| (la-related protein 4, partial [Nannochloropsis gaditana]) HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query: 1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH 340
MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH
Sbjct: 1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH 340
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|553180785|ref|XP_005853462.1| (hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526] >gi|422295600|gb|EKU22899.1| hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 479.945 bits (1234), Expect = 2.460e-163 Identity = 243/247 (98.38%), Postives = 243/247 (98.38%), Query Frame = 0
Query: 1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMG 247
MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVV VLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPP VTE DVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTG GAHMG
Sbjct: 411 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVRVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPDVTEPDVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGAGAHMG 657
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|669141632|ref|XP_008606378.1| (hypothetical protein SDRG_02560 [Saprolegnia diclina VS20] >gi|530741662|gb|EQC39904.1| hypothetical protein SDRG_02560 [Saprolegnia diclina VS20]) HSP 1 Score: 79.337 bits (194), Expect = 1.112e-12 Identity = 67/240 (27.92%), Postives = 102/240 (42.50%), Query Frame = 0
Query: 43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAH------------MGGGAGRRGGGGGRGRERASGR 267
G+ L AL+ VE FS + LA L +N Q VP+ + A+I+A LS D +L++A++ S++V L+D+ +P + R+TII RE+P A A+V A+F AV VR + G W++ +A E++A AL P++ R++ E ++ F PQS A M G AG G G GR
Sbjct: 11 GAALKDALKSQVEFYFSKANLATDSYLVSQMNAQMFVPIDTILGFAKIKA-----------------------LS-----DDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEVEAIFAGCG-AVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSE---NLFKSFFPQSTPSVDAAASPVTTSAYSVGMYGNAGYYGAPNSYGYAGKDGR 218
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|1173955590|gb|OQS02535.1| (hypothetical protein THRCLA_05092 [Thraustotheca clavata]) HSP 1 Score: 77.0258 bits (188), Expect = 5.939e-12 Identity = 62/227 (27.31%), Postives = 99/227 (43.61%), Query Frame = 0
Query: 43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSN------TGPGAHMGGGAGRRGGGGGRG 260
G+ L AL++ VE FS + LA L +N Q VP+ V+ A+++A LS + + +V+A++ S++ L+++ +P + R+TII RE+P ADV A+F K AV VR + G W++ +A ED+A L P++ R++ E ++ F PQS P A G G G G
Sbjct: 11 GAALNEALKKQVEFYFSKANLANDSYLVAQMNAQMYVPIDVILGFAKVKA-----------------------LSEDPAK-----IVQAIRDSQVCSLNEEQNAIKPNIKSERNTIILREIPSDTAPADVEAIF-KGCGAVTNVRSDVGDTWFVTMASEDEAVKTLLTLRSKTFNNAPIKARLKSE---NLFKSFFPQSTPASTPAPAPVATSAYSVGMYGASGYYG 205
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|813181982|ref|XP_012206161.1| (hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65] >gi|641528991|gb|KDO23189.1| hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 75.485 bits (184), Expect = 1.388e-11 Identity = 58/199 (29.15%), Postives = 93/199 (46.73%), Query Frame = 0
Query: 43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
G+ L AL+ VE FS + LA L +N Q VP+ + A+I+A LS D +L++A++ S++V L+D+ +P + R+TII RE+P A A+V A+F AV VR + G W++ +A E++A AL P++ R++ E ++ F PQS
Sbjct: 11 GAALKDALQSQVEFYFSKANLATDSYLVSQMNAQMFVPIDTILGFAKIKA-----------------------LS-----DDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEVEAIFAGCG-AVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSE---NLFKSFFPQS 177
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|673037988|ref|XP_008872955.1| (hypothetical protein H310_08825 [Aphanomyces invadans] >gi|574471751|gb|ETV98758.1| hypothetical protein H310_08825 [Aphanomyces invadans]) HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-10 Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0
Query: 42 GGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPE-VGQAVYGGFTPQSNTGP 242
G L AL+ VE FS + L L +N+Q VP+ V+ ++I+A + V ++V++++ S + LS +G +P + R+TII RE+P A DV A+F+ V VR + G W++ +A E+DA AL P++ R++ E V ++ TP +NT P
Sbjct: 8 SGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTD----------------------------VALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCG-TVASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPESTPSANTTP 183
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|919088136|ref|XP_013381114.1| (PREDICTED: la-related protein 4-like isoform X1 [Lingula anatina]) HSP 1 Score: 72.0182 bits (175), Expect = 3.198e-10 Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 0
Query: 26 TDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCE--HG-LWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
T + +++SS D+G+ + L V L+ +E FS LAV L ++ VP+ +A ++ ++L+++ + ++VE ++ S VQ+ + G RP R +I RE+P + DV+ LF L V CE HG WY+ ++DA+ A+Q L G+P+ RI+ + G F P++
Sbjct: 96 TSDTADETASSTDDGKEETGLRVMLKHQLEYYFSDENLAVDSYLISQMDGDQYVPIVTIANFNQV-----------------------KKLTSD-----LELIVEVLRESSHVQVDEKGEKVRPIHKRCIVILREIPASTPLKDVKDLF-SGQNCPLFVSCEFAHGDCWYVTFNSDEDAQRAYQYLREEVKTFLGKPIMARIK--AKPIIRGTFVPKN 282
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|919088139|ref|XP_013381115.1| (PREDICTED: la-related protein 4-like isoform X2 [Lingula anatina]) HSP 1 Score: 72.0182 bits (175), Expect = 3.751e-10 Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 0
Query: 26 TDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCE--HG-LWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
T + +++SS D+G+ + L V L+ +E FS LAV L ++ VP+ +A ++ ++L+++ + ++VE ++ S VQ+ + G RP R +I RE+P + DV+ LF L V CE HG WY+ ++DA+ A+Q L G+P+ RI+ + G F P++
Sbjct: 89 TSDTADETASSTDDGKEETGLRVMLKHQLEYYFSDENLAVDSYLISQMDGDQYVPIVTIANFNQV-----------------------KKLTSD-----LELIVEVLRESSHVQVDEKGEKVRPIHKRCIVILREIPASTPLKDVKDLF-SGQNCPLFVSCEFAHGDCWYVTFNSDEDAQRAYQYLREEVKTFLGKPIMARIK--AKPIIRGTFVPKN 275
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|1174754417|gb|OQV22418.1| (putative La-related protein [Hypsibius dujardini]) HSP 1 Score: 71.2478 bits (173), Expect = 7.086e-10 Identity = 65/244 (26.64%), Postives = 100/244 (40.98%), Query Frame = 0
Query: 20 TAPAVSTDSSTTK----SSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAV-LEVRC-EHGLWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGG 255
+ PA + D ST + S + S L L+ +E FSP LA L ++ + VP+ ++A + + L+ + + + EA++ S ++L D G RPR RST++ +LP VT+ D+ LF K + C + WY++ EDDAK A + L T G P++ RIR A G F G+H G G GG
Sbjct: 89 SGPASNADLSTVEMLSGRESQVSDKEQQSLLKDRLKYQIEYYFSPVNLAKDKFLRSQMDAEQFVPVALIAGFNMV-----------------------KRLTLD-----LPFITEAIRASPKLELDDFGARVRPRSNRSTVVIHDLPETVTKEDLVGLFAKQTVVKPVNFECADKSCWYVEFEEEDDAKEALRYLMAEVTEFNGAPIQARIRALPATAGGGSFKGMD----GSHSIPGMGNMGG 300
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|675196723|ref|XP_008907246.1| (hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|566021049|gb|ETI43960.1| hypothetical protein F443_11248 [Phytophthora parasitica P1569] >gi|567958423|gb|ETK84012.1| hypothetical protein L915_10962 [Phytophthora parasitica] >gi|567987109|gb|ETL37421.1| hypothetical protein L916_10859 [Phytophthora parasitica] >gi|568016407|gb|ETL90584.1| hypothetical protein L917_10765 [Phytophthora parasitica] >gi|568046783|gb|ETM43888.1| hypothetical protein L914_10800 [Phytophthora parasitica] >gi|568092684|gb|ETN07489.1| hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|570324698|gb|ETO72646.1| hypothetical protein F444_11307 [Phytophthora parasitica P1976] >gi|570948514|gb|ETP13771.1| hypothetical protein F441_11163 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 68.1662 bits (165), Expect = 5.207e-9 Identity = 59/221 (26.70%), Postives = 97/221 (43.89%), Query Frame = 0
Query: 20 TAPAVST-DSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTP 236
T P+ T S TT S+ G+ L A++ VE FS + LA L +N+Q VP+ V+ ++I ++L+ D +LV+AVQ S + L+ +P + R+TII RE+P + +V A+F+ + V VR + G W++ + E +A + AL G P++ R++ E V F P
Sbjct: 46 TDPSTHTLHSQTTAMSAQQTKAPEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKI-----------------------KQLT-----DDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCGK-VASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSE---NVLKSFYP 234 The following BLAST results are available for this feature:
BLAST of EWM30191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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