EWM30191.1, cds494 (CDS) Nannochloropsis gaditana

Overview
NameEWM30191.1
Unique Namecds494
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1234949..1235969 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30191.1
Productla-related protein 4
Partialtrue
Orig transcript idgnl|cribi|Naga_100090g1.8840.mrna
GbkeyCDS
End range.
End range1235969
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1234949..1235969 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|585112849|gb|EWM30191.1| (la-related protein 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 678.322 bits (1749), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:    1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH 340
            MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH
Sbjct:    1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGGGGGRGRERASGRSTFVAKSAGRDDDGPRASVRTSGNAACRHLSWGWRASATAATACAPPAPPPPVPSASAQRLHDDRGRIGCTFH 340          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|553180785|ref|XP_005853462.1| (hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526] >gi|422295600|gb|EKU22899.1| hypothetical protein NGA_0456500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 479.945 bits (1234), Expect = 2.460e-163
Identity = 243/247 (98.38%), Postives = 243/247 (98.38%), Query Frame = 0
Query:    1 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMG 247
            MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVV VLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPP VTE DVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTG GAHMG
Sbjct:  411 MTDSKKDATLATLAMAPSSTAPAVSTDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVRVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPDVTEPDVRALFQKWAEAVLEVRCEHGLWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGAGAHMG 657          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|669141632|ref|XP_008606378.1| (hypothetical protein SDRG_02560 [Saprolegnia diclina VS20] >gi|530741662|gb|EQC39904.1| hypothetical protein SDRG_02560 [Saprolegnia diclina VS20])

HSP 1 Score: 79.337 bits (194), Expect = 1.112e-12
Identity = 67/240 (27.92%), Postives = 102/240 (42.50%), Query Frame = 0
Query:   43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAH------------MGGGAGRRGGGGGRGRERASGR 267
            G+ L  AL+  VE  FS + LA    L   +N Q  VP+  +   A+I+A                       LS     D   +L++A++ S++V L+D+    +P +   R+TII RE+P A   A+V A+F     AV  VR + G  W++ +A E++A     AL        P++ R++ E    ++  F PQS     A             M G AG  G     G     GR
Sbjct:   11 GAALKDALKSQVEFYFSKANLATDSYLVSQMNAQMFVPIDTILGFAKIKA-----------------------LS-----DDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEVEAIFAGCG-AVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSE---NLFKSFFPQSTPSVDAAASPVTTSAYSVGMYGNAGYYGAPNSYGYAGKDGR 218          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|1173955590|gb|OQS02535.1| (hypothetical protein THRCLA_05092 [Thraustotheca clavata])

HSP 1 Score: 77.0258 bits (188), Expect = 5.939e-12
Identity = 62/227 (27.31%), Postives = 99/227 (43.61%), Query Frame = 0
Query:   43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQSN------TGPGAHMGGGAGRRGGGGGRG 260
            G+ L  AL++ VE  FS + LA    L   +N Q  VP+ V+   A+++A                       LS +  +     +V+A++ S++  L+++    +P +   R+TII RE+P     ADV A+F K   AV  VR + G  W++ +A ED+A      L        P++ R++ E    ++  F PQS         P A      G  G  G  G
Sbjct:   11 GAALNEALKKQVEFYFSKANLANDSYLVAQMNAQMYVPIDVILGFAKVKA-----------------------LSEDPAK-----IVQAIRDSQVCSLNEEQNAIKPNIKSERNTIILREIPSDTAPADVEAIF-KGCGAVTNVRSDVGDTWFVTMASEDEAVKTLLTLRSKTFNNAPIKARLKSE---NLFKSFFPQSTPASTPAPAPVATSAYSVGMYGASGYYG 205          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|813181982|ref|XP_012206161.1| (hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65] >gi|641528991|gb|KDO23189.1| hypothetical protein SPRG_20878 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.485 bits (184), Expect = 1.388e-11
Identity = 58/199 (29.15%), Postives = 93/199 (46.73%), Query Frame = 0
Query:   43 GSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
            G+ L  AL+  VE  FS + LA    L   +N Q  VP+  +   A+I+A                       LS     D   +L++A++ S++V L+D+    +P +   R+TII RE+P A   A+V A+F     AV  VR + G  W++ +A E++A     AL        P++ R++ E    ++  F PQS
Sbjct:   11 GAALKDALQSQVEFYFSKANLATDSYLVSQMNAQMFVPIDTILGFAKIKA-----------------------LS-----DDAALLIDAIKDSQIVVLNDEKNAIKPNIKSERNTIILREIPSATAPAEVEAIFAGCG-AVTSVRSDVGDTWFVTMATEEEAVNTLLALRNKTFNNAPIKARLKSE---NLFKSFFPQS 177          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|673037988|ref|XP_008872955.1| (hypothetical protein H310_08825 [Aphanomyces invadans] >gi|574471751|gb|ETV98758.1| hypothetical protein H310_08825 [Aphanomyces invadans])

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-10
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0
Query:   42 GGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPE-VGQAVYGGFTPQSNTGP 242
             G  L  AL+  VE  FS + L     L   +N+Q  VP+ V+   ++I+A  +                             V ++V++++ S +  LS +G   +P +   R+TII RE+P A    DV A+F+     V  VR + G  W++ +A E+DA     AL        P++ R++ E V ++     TP +NT P
Sbjct:    8 SGDALKEALKSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTD----------------------------VALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSATDPKDVEAIFEGCG-TVASVRSDVGDTWFVTMATEEDAVNTLLALRSKTFHDAPIKARLKSENVLRSFLPESTPSANTTP 183          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|919088136|ref|XP_013381114.1| (PREDICTED: la-related protein 4-like isoform X1 [Lingula anatina])

HSP 1 Score: 72.0182 bits (175), Expect = 3.198e-10
Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   26 TDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCE--HG-LWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
            T  +  +++SS D+G+  + L V L+  +E  FS   LAV   L   ++    VP+  +A   ++                       ++L+++     + ++VE ++ S  VQ+ + G   RP   R  +I RE+P +    DV+ LF       L V CE  HG  WY+    ++DA+ A+Q L        G+P+  RI+      + G F P++
Sbjct:   96 TSDTADETASSTDDGKEETGLRVMLKHQLEYYFSDENLAVDSYLISQMDGDQYVPIVTIANFNQV-----------------------KKLTSD-----LELIVEVLRESSHVQVDEKGEKVRPIHKRCIVILREIPASTPLKDVKDLF-SGQNCPLFVSCEFAHGDCWYVTFNSDEDAQRAYQYLREEVKTFLGKPIMARIK--AKPIIRGTFVPKN 282          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|919088139|ref|XP_013381115.1| (PREDICTED: la-related protein 4-like isoform X2 [Lingula anatina])

HSP 1 Score: 72.0182 bits (175), Expect = 3.751e-10
Identity = 56/218 (25.69%), Postives = 98/218 (44.95%), Query Frame = 0
Query:   26 TDSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAVLEVRCE--HG-LWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQS 238
            T  +  +++SS D+G+  + L V L+  +E  FS   LAV   L   ++    VP+  +A   ++                       ++L+++     + ++VE ++ S  VQ+ + G   RP   R  +I RE+P +    DV+ LF       L V CE  HG  WY+    ++DA+ A+Q L        G+P+  RI+      + G F P++
Sbjct:   89 TSDTADETASSTDDGKEETGLRVMLKHQLEYYFSDENLAVDSYLISQMDGDQYVPIVTIANFNQV-----------------------KKLTSD-----LELIVEVLRESSHVQVDEKGEKVRPIHKRCIVILREIPASTPLKDVKDLF-SGQNCPLFVSCEFAHGDCWYVTFNSDEDAQRAYQYLREEVKTFLGKPIMARIK--AKPIIRGTFVPKN 275          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|1174754417|gb|OQV22418.1| (putative La-related protein [Hypsibius dujardini])

HSP 1 Score: 71.2478 bits (173), Expect = 7.086e-10
Identity = 65/244 (26.64%), Postives = 100/244 (40.98%), Query Frame = 0
Query:   20 TAPAVSTDSSTTK----SSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVARSTIIARELPPAVTEADVRALFQKWAEAV-LEVRC-EHGLWYIKLAGEDDAKAAFQALNG--TPVEGQPLRLRIRPEVGQAVYGGFTPQSNTGPGAHMGGGAGRRGG 255
            + PA + D ST +      S   +    S L   L+  +E  FSP  LA    L   ++ +  VP+ ++A    +                       + L+ +     +  + EA++ S  ++L D G   RPR  RST++  +LP  VT+ D+  LF K      +   C +   WY++   EDDAK A + L    T   G P++ RIR     A  G F        G+H   G G  GG
Sbjct:   89 SGPASNADLSTVEMLSGRESQVSDKEQQSLLKDRLKYQIEYYFSPVNLAKDKFLRSQMDAEQFVPVALIAGFNMV-----------------------KRLTLD-----LPFITEAIRASPKLELDDFGARVRPRSNRSTVVIHDLPETVTKEDLVGLFAKQTVVKPVNFECADKSCWYVEFEEEDDAKEALRYLMAEVTEFNGAPIQARIRALPATAGGGSFKGMD----GSHSIPGMGNMGG 300          
BLAST of EWM30191.1 vs. NCBI_GenBank
Match: gi|675196723|ref|XP_008907246.1| (hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|566021049|gb|ETI43960.1| hypothetical protein F443_11248 [Phytophthora parasitica P1569] >gi|567958423|gb|ETK84012.1| hypothetical protein L915_10962 [Phytophthora parasitica] >gi|567987109|gb|ETL37421.1| hypothetical protein L916_10859 [Phytophthora parasitica] >gi|568016407|gb|ETL90584.1| hypothetical protein L917_10765 [Phytophthora parasitica] >gi|568046783|gb|ETM43888.1| hypothetical protein L914_10800 [Phytophthora parasitica] >gi|568092684|gb|ETN07489.1| hypothetical protein PPTG_13373 [Phytophthora parasitica INRA-310] >gi|570324698|gb|ETO72646.1| hypothetical protein F444_11307 [Phytophthora parasitica P1976] >gi|570948514|gb|ETP13771.1| hypothetical protein F441_11163 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.1662 bits (165), Expect = 5.207e-9
Identity = 59/221 (26.70%), Postives = 97/221 (43.89%), Query Frame = 0
Query:   20 TAPAVST-DSSTTKSSSSADNGRGGSTLAVALREVVEDLFSPSKLAVHPVLSGTLNTQGSVPLPVLAQLAEIQAAWSTAKKTSGGKKGEGGKEEGRELSAEGGQDVVGVLVEAVQMSRLVQLSDDGGGARPRVA--RSTIIARELPPAVTEADVRALFQKWAEAVLEVRCEHG-LWYIKLAGEDDAKAAFQALNGTPVEGQPLRLRIRPEVGQAVYGGFTP 236
            T P+  T  S TT  S+       G+ L  A++  VE  FS + LA    L   +N+Q  VP+ V+   ++I                       ++L+     D   +LV+AVQ S +  L+      +P +   R+TII RE+P +    +V A+F+   + V  VR + G  W++ +  E +A +   AL      G P++ R++ E    V   F P
Sbjct:   46 TDPSTHTLHSQTTAMSAQQTKAPEGAELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKI-----------------------KQLT-----DDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIFEGCGK-VASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSE---NVLKSFYP 234          
The following BLAST results are available for this feature:
BLAST of EWM30191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112849|gb|EWM30191.1|0.000e+0100.00la-related protein 4, partial [Nannochloropsis gad... [more]
gi|553180785|ref|XP_005853462.1|2.460e-16398.38hypothetical protein NGA_0456500, partial [Nannoch... [more]
gi|669141632|ref|XP_008606378.1|1.112e-1227.92hypothetical protein SDRG_02560 [Saprolegnia dicli... [more]
gi|1173955590|gb|OQS02535.1|5.939e-1227.31hypothetical protein THRCLA_05092 [Thraustotheca c... [more]
gi|813181982|ref|XP_012206161.1|1.388e-1129.15hypothetical protein SPRG_20878 [Saprolegnia paras... [more]
gi|673037988|ref|XP_008872955.1|1.419e-1027.32hypothetical protein H310_08825 [Aphanomyces invad... [more]
gi|919088136|ref|XP_013381114.1|3.198e-1025.69PREDICTED: la-related protein 4-like isoform X1 [L... [more]
gi|919088139|ref|XP_013381115.1|3.751e-1025.69PREDICTED: la-related protein 4-like isoform X2 [L... [more]
gi|1174754417|gb|OQV22418.1|7.086e-1026.64putative La-related protein [Hypsibius dujardini][more]
gi|675196723|ref|XP_008907246.1|5.207e-926.70hypothetical protein PPTG_13373 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna494rna494Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications