EWM25746.1, cds4929 (CDS) Nannochloropsis gaditana

Overview
NameEWM25746.1
Unique Namecds4929
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:726106..726621 -
Alignment locationCM002464.1:725814..725960 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25746.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100087g22.1126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:726106..726621 -
CM002464.1supercontigCM002464.1:725814..725960 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|585107608|gb|EWM25746.1| (hypothetical protein Naga_100087g22 [Nannochloropsis gaditana])

HSP 1 Score: 452.21 bits (1162), Expect = 6.454e-161
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MEKIHAFPAEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSSLMMPPCPRQVRPIYQAQCRVLVPPQTPILHLANSPPRAQRVLPRTSYSEI 220
            MEKIHAFPAEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSSLMMPPCPRQVRPIYQAQCRVLVPPQTPILHLANSPPRAQRVLPRTSYSEI
Sbjct:    1 MEKIHAFPAEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSSLMMPPCPRQVRPIYQAQCRVLVPPQTPILHLANSPPRAQRVLPRTSYSEI 220          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|673029594|ref|XP_008868758.1| (hypothetical protein H310_05726 [Aphanomyces invadans] >gi|574475153|gb|ETW02153.1| hypothetical protein H310_05726 [Aphanomyces invadans])

HSP 1 Score: 68.1662 bits (165), Expect = 7.096e-10
Identity = 48/161 (29.81%), Postives = 74/161 (45.96%), Query Frame = 0
Query:    9 AEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEK------DFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRR 163
             E PP L          ++ + R  ++AR   R+ T  ++K            E+V  FW++F     +V + L+ +   E + TN+SS           L  + T   +L  L +   L+LPPYD+R  Q  T+ L   +E  RTAL PRK+FTF  R +
Sbjct:   74 GEFPPFLVVHDD---VSLEEKVRLVEDARAAQREQTSQRQKAQVSTTSGTSRAEAVDAFWSEFSEKEANVWRTLDTI---EGSSTNVSSA----------LDALCTHTHALRDLAAAATLYLPPYDIRATQALTQRLMQAIEAKRTALAPRKKFTFKARAK 218          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|698801614|ref|XP_009833836.1| (hypothetical protein H257_09341 [Aphanomyces astaci] >gi|574111428|gb|ETV76924.1| hypothetical protein H257_09341 [Aphanomyces astaci])

HSP 1 Score: 67.0106 bits (162), Expect = 2.118e-9
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 0
Query:    9 AEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEK------DFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRR 163
             + PP L  Q     A ++ + R  ++AR   R+ T  ++K       F    E+V  FW++F    D    V   L S E A          + +V  +L  + T +  L  L +   +FLPPYD+R  Q  T  L   ++  RTAL PRK+FTF  R +
Sbjct:   74 GDFPPFLVVQDD---ASLEEKVRLVEDARAAQRQQTSQRQKAQASATSFTSRAEAVDAFWSEFN---DKEANVRRTLESIEAA----------SPDVGHSLDSLCTDVHGLRDLAAAATIFLPPYDIRATQAVTHRLLQAIDAKRTALAPRKKFTFKARAK 218          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|1026773744|gb|OAE32912.1| (hypothetical protein AXG93_399s1210 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 65.4698 bits (158), Expect = 5.405e-9
Identity = 45/150 (30.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query:    9 AEVPPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTF 158
            AEV        + +HAE   R     + RL+     K++  D  DP+ESV  F   F +  + V + L + L+ E   T+I        ++DD    +  ++ +L++LV++ + FLP YDVR +Q     L+  LE   + L+P+K+F+F
Sbjct:    6 AEVQAAAAEMLERKHAERLERLALINKNRLEGSSIRKSQAADSSDPRESVDVFLAAFGQKREVVEKGLASALANEVEPTHIKR------HLDD----LALEVGALEKLVADASYFLPAYDVRSSQTTILKLKDDLESASSQLLPKKKFSF 145          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|1069355985|ref|XP_018118059.1| (PREDICTED: tubulin-specific chaperone C-like [Xenopus laevis] >gi|1050377176|gb|OCT79373.1| hypothetical protein XELAEV_18026186mg [Xenopus laevis])

HSP 1 Score: 65.0846 bits (157), Expect = 6.628e-9
Identity = 41/114 (35.96%), Postives = 60/114 (52.63%), Query Frame = 0
Query:   78 ALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSSLMMPPCPRQVRP---IYQAQC 188
            A    E A    + G   A ++D+   R+    + L +L++++ +FLP YD+R+AQE    +   LEE R AL PR +FTF  RR+ A+  +S   P  P Q RP     Q QC
Sbjct:   57 ASFGSEKAAIEKALGSAEAGSLDEAAGRL----QRLQKLLNDSLMFLPSYDIRQAQEAIGRIHGTLEEKRQALQPRGKFTFKSRRKEAATPASQPTPAGP-QSRPREAQNQTQC 165          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|669157882|ref|XP_008614503.1| (hypothetical protein SDRG_10297 [Saprolegnia diclina VS20] >gi|530733859|gb|EQC32101.1| hypothetical protein SDRG_10297 [Saprolegnia diclina VS20])

HSP 1 Score: 64.6994 bits (156), Expect = 1.348e-8
Identity = 59/209 (28.23%), Postives = 98/209 (46.89%), Query Frame = 0
Query:   12 PPVLTPQSKNRHAEIDARFRAHQEARLQARKDTKAK----EKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSSLMMPPCPRQVRP-----------IYQAQC-RVLV--PPQTPILHLA 202
            PP+L     + +  ++ + R  + AR + R+ T+ K    EKD +    +V  FW  F          L+AL S+E            + N+   L  +   ++++    ++ +L+LPPYD+R++Q     L +++E  R+AL PRK+FTF  R + AS T+  +  P      P           IY  +C  VLV   P++P L LA
Sbjct:   77 PPLLV---VSDNLSLEEKVRVVENARAEQRETTQRKAALSEKDTR--ATAVDGFWKQFTEMETATRARLDALQSQE-----------PSPNLRAELDSLVAGVQAMRDSAADASLYLPPYDIRQSQAILSRLLAEIEAQRSALAPRKKFTFKARAKKASATTEAITAPSSDAPTPAIAPATLDHELIYADRCDEVLVIDAPESPDLTLA 269          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|971516158|dbj|GAQ82017.1| (hypothetical protein KFL_000980040 [Klebsormidium nitens])

HSP 1 Score: 62.7734 bits (151), Expect = 1.687e-8
Identity = 34/116 (29.31%), Postives = 60/116 (51.72%), Query Frame = 0
Query:   54 PKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTS 169
            P ESV  F   F    +DV + L +L           SG G  +     L ++  +I+SL++ VS+   FLP Y+VR +Q     +R +LE +R  ++P+++F+F  +++    T+
Sbjct:   29 PGESVQQFLDSFGHQMEDVEKRLESL-----------SGQGEGEVSTSELDQLAAEIQSLEKSVSDAVYFLPSYEVRASQGALIQMRGRLEALRAKIVPKRKFSFGAKKKEKESTA 133          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|672117919|ref|XP_008782154.1| (PREDICTED: tubulin-folding cofactor C-like [Phoenix dactylifera])

HSP 1 Score: 60.077 bits (144), Expect = 4.301e-7
Identity = 43/151 (28.48%), Postives = 73/151 (48.34%), Query Frame = 0
Query:   15 LTPQSKNRHAEIDARFRAHQEARLQA----RKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGR 161
            L P ++ +HA +  R    Q +RLQ     R D+ A    F+  +  +  F +D +R+ +  +    AL          +S P  A N+   L ++   I  LD+LV+  + FLP Y+VR + +    L+  L+   + LMPRK+F+F  +
Sbjct:   17 LDPIAQMKHATMLERLSNLQRSRLQQSAARRSDSAASSPAFESVRSFLDRF-SDSKRSIEADLACCRAL----------ASDPASAPNLKPELEKVSASIADLDRLVAENSYFLPSYEVRSSLKAISELKEALDSANSELMPRKKFSFKNK 156          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|168032917|ref|XP_001768964.1| (predicted protein [Physcomitrella patens] >gi|162679876|gb|EDQ66318.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 59.6918 bits (143), Expect = 4.980e-7
Identity = 44/171 (25.73%), Postives = 85/171 (49.71%), Query Frame = 0
Query:   15 LTPQSKNRHAEIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVT-----SSLMMPPCPRQV 180
            L+P  + + A+ + R ++H +  L      ++      DP ESV  F   F +  D     L+A+L+++ +     S  G  + V + L  +  +I +++ LV++++ FLP Y ++ +Q     L+ ++E     L+P+K+F+F  R +TA  T     S  ++P  P  V
Sbjct:    5 LSPALEKKRAKKEERLQSHLQTYLNDSSARRSLVAASSDPNESVDGFLASFSQCRDQ----LSAILAKKSS----KSDEGALECVREELKSLSLEIVNMESLVADSSFFLPTYIMQSSQSSITKLKEEIEATTAELLPKKKFSF--RSKTAKPTKPVEKSQEILPAIPATV 165          
BLAST of EWM25746.1 vs. NCBI_GenBank
Match: gi|1191057489|ref|XP_020906865.1| (tubulin-specific chaperone C-like [Exaiptasia pallida] >gi|999986390|gb|KXJ25529.1| Tubulin-specific chaperone C [Exaiptasia pallida])

HSP 1 Score: 59.6918 bits (143), Expect = 5.355e-7
Identity = 36/146 (24.66%), Postives = 73/146 (50.00%), Query Frame = 0
Query:   25 EIDARFRAHQEARLQARKDTKAKEKDFKDPKESVGYFWTDFRRAYDDVVQVLNALLSEEHADTNISSGPGRADNVDDTLSRMDTKIKSLDQLVSNTALFLPPYDVRRAQEETESLRSKLEEVRTALMPRKRFTFAGRRRTASVTSS 170
            ++  R     E RLQ     + +     DP+ES   F + F +   ++  +L    S          G  + +++ D   +M TK + L + ++++++FLP Y+++ +Q+   +L+  + E R  LMP+K+F F  R++   V+S+
Sbjct:    4 DVRKRLAQRNEERLQTINQRRVENDXXXDPEESKDMFLSTFSKERSELEDLLKKCQS---------IGXDK-NSIADHFEQMSTKSQQLQKYLADSSMFLPSYNIKSSQDRLSALQQAINEERERLMPKKKFAFRSRKKEIEVSST 139          
The following BLAST results are available for this feature:
BLAST of EWM25746.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107608|gb|EWM25746.1|6.454e-161100.00hypothetical protein Naga_100087g22 [Nannochlorops... [more]
gi|673029594|ref|XP_008868758.1|7.096e-1029.81hypothetical protein H310_05726 [Aphanomyces invad... [more]
gi|698801614|ref|XP_009833836.1|2.118e-930.43hypothetical protein H257_09341 [Aphanomyces astac... [more]
gi|1026773744|gb|OAE32912.1|5.405e-930.00hypothetical protein AXG93_399s1210 [Marchantia po... [more]
gi|1069355985|ref|XP_018118059.1|6.628e-935.96PREDICTED: tubulin-specific chaperone C-like [Xeno... [more]
gi|669157882|ref|XP_008614503.1|1.348e-828.23hypothetical protein SDRG_10297 [Saprolegnia dicli... [more]
gi|971516158|dbj|GAQ82017.1|1.687e-829.31hypothetical protein KFL_000980040 [Klebsormidium ... [more]
gi|672117919|ref|XP_008782154.1|4.301e-728.48PREDICTED: tubulin-folding cofactor C-like [Phoeni... [more]
gi|168032917|ref|XP_001768964.1|4.980e-725.73predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1191057489|ref|XP_020906865.1|5.355e-724.66tubulin-specific chaperone C-like [Exaiptasia pall... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4941rna4941Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications