EWM25748.1, cds4916 (CDS) Nannochloropsis gaditana

Overview
NameEWM25748.1
Unique Namecds4916
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:691539..692113 -
Alignment locationCM002464.1:691052..691398 -
Alignment locationCM002464.1:690574..690953 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25748.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100162g2.1247.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:691539..692113 -
CM002464.1supercontigCM002464.1:691052..691398 -
CM002464.1supercontigCM002464.1:690574..690953 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR014982GSCFA
Homology
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|585107611|gb|EWM25748.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 893.264 bits (2307), Expect = 0.000e+0
Identity = 433/433 (100.00%), Postives = 433/433 (100.00%), Query Frame = 0
Query:    1 MTCSSTRYFPGRGNHALPRGPAQGRHATPVGTGKKTSLRSLLVVKNIMLVACSFSPPQDGRLAMLSASSFLPPPLPRVGTSRPDQLLVTRTRSSTRISSSFHNSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEAGVYARRDGVVCGEMAYHTAALLNEAGRLICVCEFSLRVNASKVFVPAVVAYFGMSVLHPLIMFPFLIFTSTKRPQQGPPSRRCS 433
            MTCSSTRYFPGRGNHALPRGPAQGRHATPVGTGKKTSLRSLLVVKNIMLVACSFSPPQDGRLAMLSASSFLPPPLPRVGTSRPDQLLVTRTRSSTRISSSFHNSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEAGVYARRDGVVCGEMAYHTAALLNEAGRLICVCEFSLRVNASKVFVPAVVAYFGMSVLHPLIMFPFLIFTSTKRPQQGPPSRRCS
Sbjct:    1 MTCSSTRYFPGRGNHALPRGPAQGRHATPVGTGKKTSLRSLLVVKNIMLVACSFSPPQDGRLAMLSASSFLPPPLPRVGTSRPDQLLVTRTRSSTRISSSFHNSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEAGVYARRDGVVCGEMAYHTAALLNEAGRLICVCEFSLRVNASKVFVPAVVAYFGMSVLHPLIMFPFLIFTSTKRPQQGPPSRRCS 433          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1052972562|emb|SCH92586.1| (GSCFA family [uncultured Bacteroides sp.])

HSP 1 Score: 134.035 bits (336), Expect = 4.413e-32
Identity = 79/241 (32.78%), Postives = 112/241 (46.47%), Query Frame = 0
Query:  104 SFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRN 344
             FRT V +  +     IH ADQ+   GSCFS+ +GN L E  K   +VNPFG  YNP+SIA  + RL  G  + +++L  H + G+W SL HHS FS  D +  L  IN R+M+G   L  A  +  T G++  Y +                                             + G+IV NCH+LPA  F R ++    I  A    ++ +R L  H    FTVSP+RH+++
Sbjct:    2 EFRTKVELPLK--GPEIHHADQLMMWGSCFSEHIGNLLSEN-KFTCDVNPFGVLYNPISIASSIQRLLDGLPYQKQDL--HQEQGQWYSLMHHSSFSSADVTECLDKINQRIMSGHEHLLHADWLIFTWGSSFVYTW--------------------------------------------KEDGKIVGNCHKLPARLFERHMISADEIATAYLPLLQQLRSLRPHLQCLFTVSPIRHLKD 193          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|524634831|emb|CDD50914.1| (putative uncharacterized protein [Bacteroides sp. CAG:875])

HSP 1 Score: 129.413 bits (324), Expect = 2.477e-30
Identity = 78/241 (32.37%), Postives = 111/241 (46.06%), Query Frame = 0
Query:  104 SFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRN 344
             FRT V +  +     IH ADQ+   GSCFS+ +GN L E  K   +VNP G  YNP+SIA  + RL  G  + +++L  H + G+W SL HHS FS  D +  L  IN R++AG   L  A  +  T G++  Y +                                             + G+IV NCH+LPA  F R ++    I  A    ++ +R L  H    FTVSP+RH+++
Sbjct:    2 EFRTKVELPLK--GPEIHHADQLMMWGSCFSEHIGNLLSEN-KFTCDVNPSGVLYNPISIASSIQRLLDGLPYQEQDL--HQEQGQWYSLMHHSSFSSADVTECLDKINQRIIAGHEHLLHADWLIFTWGSSFVYTW--------------------------------------------KEDGRIVGNCHKLPARLFERHMVSADEIATAYLPLLQQLRSLRPHLQCLFTVSPIRHLKD 193          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1176496709|ref|WP_082326467.1| (hypothetical protein [Sunxiuqinia dokdonensis] >gi|918919496|gb|KOH44501.1| hypothetical protein NC99_27310 [Sunxiuqinia dokdonensis])

HSP 1 Score: 129.028 bits (323), Expect = 3.603e-30
Identity = 77/246 (31.30%), Postives = 121/246 (49.19%), Query Frame = 0
Query:  103 NSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGE 348
            N + T V I  +    +I    ++  +GSCF++ +G  + ++LK +V+VNPFG  YNP SI++ L  L  G+ + + +L  H  DG W S +HHS FS  ++   L GIN +L+   A L+ ++ + ++LGTA  +   K+T                                           GQIV+NCH+LPAA F+R  L P  IV+   + + ++   N    I FTVSP+RH ++   E
Sbjct:    2 NQYYTEVNI--KDLGWKIDYHSKLMLLGSCFAENIGQRM-QRLKFQVDVNPFGILYNPQSISKSLRLLVEGKAYSEADLFEH--DGVWHSFDHHSRFSSTNQQQVLDGINEQLILSAAHLKESEFLMLSLGTAWIFE-LKRT-------------------------------------------GQIVSNCHKLPAAEFKRLRLTPGEIVEDYRELILALWRFNPKLKILFTVSPIRHWKDGAVE 198          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1082475416|gb|OFY20413.1| (hypothetical protein A2W98_10935 [Bacteroidetes bacterium GWF2_33_38] >gi|1082541833|gb|OFY76586.1| hypothetical protein A2265_11120 [Bacteroidetes bacterium RIFOXYA12_FULL_33_9] >gi|1082556336|gb|OFY90100.1| hypothetical protein A2236_01420 [Bacteroidetes bacterium RIFOXYA2_FULL_33_7])

HSP 1 Score: 128.257 bits (321), Expect = 5.643e-30
Identity = 77/249 (30.92%), Postives = 115/249 (46.18%), Query Frame = 0
Query:  103 NSFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEAGV 351
            NSFRTIV  TP+      H ++ +  +GSCF++ +G+ L +KL  KVE+NPFG  YNP+SI   L  L   + F   +L  + +  RW +  HHS FS+ +  + L  IN  + AG   L+ A  + +T GTA  Y                                               + G IV+NCH+ PA+ F  ELL    I+    Q + S++  N +  I FT+SP+RH ++   E  +
Sbjct:    2 NSFRTIVE-TPKYKINISHDSN-ILMLGSCFTENIGSNL-QKLLFKVEINPFGIIYNPISIKNSLEILIENQKFTNSDLKFYNE--RWFTYFHHSRFSNANAEDCLLNINQAINAGNEVLKKADILLITFGTARVYRLI--------------------------------------------ESGNIVSNCHKQPASLFSNELLRVENIISEYSQLIVSLKKFNPNINIIFTISPIRHWKDGAHENQI 201          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1082405537|gb|OFX61020.1| (hypothetical protein A2066_20175 [Bacteroidetes bacterium GWB2_41_8])

HSP 1 Score: 128.642 bits (322), Expect = 6.161e-30
Identity = 81/249 (32.53%), Postives = 118/249 (47.39%), Query Frame = 0
Query:  104 SFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQD-GRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGEAGV 351
            SF T + I   P   ++  +  + F+GSCFS+ +G  L++ LK  V++NPFG  YNPVSIA  L  L   R+F + +L    QD G W S  HHS FSD DR  AL  +N R+     FL+ A  + +T GT+  Y       EL K                                      GQ+V+NCH++ ++ F+R  L    I +A  + +E +   N +  + FTVSP+RH ++   E  V
Sbjct:    2 SFFTEIKIPEFP--WKMDYSKSMMFMGSCFSENIGLKLQD-LKFNVDMNPFGIIYNPVSIANSLKILLEKRIFTEVDLF---QDHGLWNSFSHHSRFSDTDREAALEKMNTRIELSSDFLQKADFLIITFGTSWVY-------ELKK-------------------------------------SGQVVSNCHKVLSSEFKRFRLGVYEITEAYRELLEQLWIFNPNLKVVFTVSPIRHWKDGAVENQV 200          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|524740506|emb|CDE39737.1| (putative uncharacterized protein [Prevotella sp. CAG:279])

HSP 1 Score: 127.487 bits (319), Expect = 1.037e-29
Identity = 79/228 (34.65%), Postives = 109/228 (47.81%), Query Frame = 0
Query:  119 RIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAG 346
            +I   + V  +GSCF++ +GN LK  + + + +NPFGT YNP SIA+ L RL     F  +EL+ +     W S+ HHS FS  D+  AL  INA    G A LR A+H+ VT GTA+ +                       S AD                      G+ VANCH++PA+ F R +L    I       ++ IR  N H  I+FTVSPVRH+ +  
Sbjct:   15 KIEHDEAVMMLGSCFAEDVGNLLKRSM-LALCINPFGTLYNPRSIAQSLRRLMADLPFSADELVAYG--NLWHSMSHHSRFSSVDKDRALQKINAAYAEGVACLRSARHLIVTFGTAYTF-----------------------STAD----------------------GETVANCHKMPASMFNRRMLSTNEIADEWIPLIDDIRKFNPHIDITFTVSPVRHLADGA 194          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1120298415|ref|WP_073164089.1| (hypothetical protein [Tangfeifania diversioriginum] >gi|1110274078|emb|SHI34301.1| GSCFA family protein [Tangfeifania diversioriginum])

HSP 1 Score: 126.716 bits (317), Expect = 2.393e-29
Identity = 74/221 (33.48%), Postives = 102/221 (46.15%), Query Frame = 0
Query:  128 FIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGE 348
            F+GSCF++ +G  +   LK  V++NPFG  YNP+S+A  L  L   + F  E+L +H  +G W S  HHS FS  D + AL  IN R+     +L  A+ +FVT GTA  Y Y +                                             GQ V+NCH++PAA F+R  L    I Q     + SIR +N      FTVSP+RH ++   E
Sbjct:   26 FMGSCFTENIGGKMA-ALKYDVDINPFGILYNPLSVANALELLLQKKKFTHEDLFQH--NGLWHSFYHHSRFSSSDANVALENINTRIETSAEYLEKAEFLFVTFGTAWVYEYIQ--------------------------------------------TGQTVSNCHKIPAAKFKRFRLAADTITQQFIPLINSIRKINPGIKFIFTVSPIRHWKDGAVE 199          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1082380238|gb|OFX38325.1| (hypothetical protein A2X03_00845 [Bacteroidetes bacterium GWA2_40_15] >gi|1082439358|gb|OFX85168.1| hypothetical protein A2X06_12260 [Bacteroidetes bacterium GWC2_40_22] >gi|1082451175|gb|OFX96714.1| hypothetical protein A2X05_17410 [Bacteroidetes bacterium GWE2_41_25] >gi|1082523132|gb|OFY60868.1| hypothetical protein A2X04_01940 [Bacteroidetes bacterium GWF2_41_9])

HSP 1 Score: 125.561 bits (314), Expect = 6.176e-29
Identity = 75/243 (30.86%), Postives = 114/243 (46.91%), Query Frame = 0
Query:  104 SFRTIVPITPRPDACRIHPADQVFFIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAG 346
            +FRT + + P P   ++  +D V F GSCF+ ++G  +  + KM   +NP GT YNPVS+   L  L +G++F  ++L  +  +G W+S  HH+ FS  D  + +  IN R +  R FL  ++  F+T GTA  + + KKT                                           G IV+NCH++PAA F  ELL    IV      ++ +   N    + FTVSPVRH ++  
Sbjct:    5 NFRTNINVGPSP--WKVSYSDNVMFAGSCFAASIGEQMLMR-KMPAMINPAGTVYNPVSVLNTLENLISGKIFTLDDLYNY--EGTWLSFFHHTDFSSEDHDSLIDKINDRSVKAREFLSNSRFFFITFGTARVFRW-KKT-------------------------------------------GTIVSNCHKIPAAQFETELLAVNDIVDRWVSLLDRLPEFNPDLKVVFTVSPVRHWKDGA 198          
BLAST of EWM25748.1 vs. NCBI_GenBank
Match: gi|1120130278|ref|WP_073000550.1| (hypothetical protein [Mariniphaga anaerophila] >gi|1110303162|emb|SHF07280.1| GSCFA family protein [Mariniphaga anaerophila])

HSP 1 Score: 125.176 bits (313), Expect = 9.106e-29
Identity = 73/221 (33.03%), Postives = 102/221 (46.15%), Query Frame = 0
Query:  128 FIGSCFSDTMGNTLKEKLKMKVEVNPFGTSYNPVSIARCLHRLATGRLFDQEELLRHPQDGRWISLEHHSGFSDRDRSNALAGINARLMAGRAFLRGAQHVFVTLGTAHAYVYFKKTDELDKQREEGEGCNGEESKADGAEGIEGREEKQQLRARGANDGGQIVANCHRLPAACFRRELLDPPRIVQALHQTVESIRCLNTHCTISFTVSPVRHIRNAGGE 348
            F+GSCF++ +GN +   LK  V++NPFG  YNPVS+A  L  L   + F + +L+++  +G W S  HHS FS  D    L  IN R+ +   FL+ A  +F+T GTA  Y Y                                            N  GQ V+NCH++P   FRR  L P  I +   Q    IR +N    + FTVSP+RH ++   E
Sbjct:   24 FMGSCFTENVGNKMA-GLKYPVDINPFGILYNPVSVANGLRFLLEKKKFAKNDLIQN--NGLWHSFFHHSRFSSPDAEETLDAINNRIESSAEFLKNAGFLFLTFGTAWVYAY--------------------------------------------NKTGQTVSNCHKIPEKEFRRFRLTPDEITENYKQLFSEIRQINPEIKLIFTVSPIRHWKDGAIE 197          
The following BLAST results are available for this feature:
BLAST of EWM25748.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107611|gb|EWM25748.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|1052972562|emb|SCH92586.1|4.413e-3232.78GSCFA family [uncultured Bacteroides sp.][more]
gi|524634831|emb|CDD50914.1|2.477e-3032.37putative uncharacterized protein [Bacteroides sp. ... [more]
gi|1176496709|ref|WP_082326467.1|3.603e-3031.30hypothetical protein [Sunxiuqinia dokdonensis] >gi... [more]
gi|1082475416|gb|OFY20413.1|5.643e-3030.92hypothetical protein A2W98_10935 [Bacteroidetes ba... [more]
gi|1082405537|gb|OFX61020.1|6.161e-3032.53hypothetical protein A2066_20175 [Bacteroidetes ba... [more]
gi|524740506|emb|CDE39737.1|1.037e-2934.65putative uncharacterized protein [Prevotella sp. C... [more]
gi|1120298415|ref|WP_073164089.1|2.393e-2933.48hypothetical protein [Tangfeifania diversioriginum... [more]
gi|1082380238|gb|OFX38325.1|6.176e-2930.86hypothetical protein A2X03_00845 [Bacteroidetes ba... [more]
gi|1120130278|ref|WP_073000550.1|9.106e-2933.03hypothetical protein [Mariniphaga anaerophila] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4928rna4928Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications