EWM25788.1, cds4898 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|585107654|gb|EWM25788.1| (adp-ribosylation factor gtpase-activating protein agd8 [Nannochloropsis gaditana]) HSP 1 Score: 1029.24 bits (2660), Expect = 0.000e+0 Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 0
Query: 1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA 500
MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA
Sbjct: 1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA 500
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|299473541|emb|CBN77936.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 187.963 bits (476), Expect = 1.577e-49 Identity = 82/144 (56.94%), Postives = 107/144 (74.31%), Query Frame = 0
Query: 12 AAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPP--PPTDTVVAVGCGLDNLM 153
+ F+R++S+ +N+VCFDCPTRNPTWASATYG+FICY+CSA HR +GVH+TFVRS++LD+W P ++ M+ GGN NA FFR HGVT K EQKY SRAA++Y++HL K +AD V + PP P + V +V GLD LM
Sbjct: 13 STFRRLRSKADNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGV-----VTPPQSPREEPVDSVADGLDRLM 151
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|727554720|ref|XP_010449545.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Camelina sativa]) HSP 1 Score: 183.341 bits (464), Expect = 4.685e-49 Identity = 80/155 (51.61%), Postives = 108/155 (69.68%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVP 163
D+ F+++KS+ EN+VCFDC +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAAELY+ L+K VA I + ++ P P + G N + SY E++P
Sbjct: 11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILAKEVAKAIAEETSSGLPSSPVAAATSQLPGASNGVSSYSVKEELP 165
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|470128627|ref|XP_004300238.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Fragaria vesca subsp. vesca]) HSP 1 Score: 182.956 bits (463), Expect = 5.168e-49 Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDA 130
D+ A FK++KS+ EN++CFDC +NPTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM GGN+ A FF++HG T GGK+E KY+SRAAELY+ LSK VA +V DA
Sbjct: 8 DKNAVFKKLKSKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRTMTFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMVEDA 129
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|922531207|ref|XP_013597537.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica oleracea var. oleracea] >gi|923864526|ref|XP_013707636.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica napus] >gi|674931765|emb|CDY01499.1| BnaC07g34890D [Brassica napus]) HSP 1 Score: 182.956 bits (463), Expect = 6.395e-49 Identity = 75/134 (55.97%), Postives = 103/134 (76.87%), Query Frame = 0
Query: 5 VTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPP 138
++++D+ A F+++KS+ +N+VCFDC +NPTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I DA P P
Sbjct: 1 MSSSDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAIALPSSP 134
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|923553072|ref|XP_013737278.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X1 [Brassica napus] >gi|923553076|ref|XP_013737279.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X2 [Brassica napus]) HSP 1 Score: 182.57 bits (462), Expect = 9.364e-49 Identity = 77/138 (55.80%), Postives = 101/138 (73.19%), Query Frame = 0
Query: 1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPP 138
MS D+ A F+++KS+ +N+VCFDC +NPTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I DA P P
Sbjct: 1 MSSSDNLTDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAIALPSSP 138
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|18414983|ref|NP_567543.1| (ARF-GAP domain 8 [Arabidopsis thaliana] >gi|75244593|sp|Q8H100.1|AGD8_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD8; Short=ARF GAP AGD8; AltName: Full=Protein ARF-GAP DOMAIN 8; Short=AtAGD8 >gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis thaliana] >gi|51970716|dbj|BAD44050.1| unknown protein [Arabidopsis thaliana] >gi|51971433|dbj|BAD44381.1| unknown protein [Arabidopsis thaliana] >gi|62319827|dbj|BAD93852.1| hypothetical protein [Arabidopsis thaliana] >gi|62320091|dbj|BAD94263.1| hypothetical protein [Arabidopsis thaliana] >gi|110739292|dbj|BAF01559.1| hypothetical protein [Arabidopsis thaliana] >gi|332658561|gb|AEE83961.1| ARF-GAP domain 8 [Arabidopsis thaliana] >gi|1032283983|gb|OAO98310.1| AGD8 [Arabidopsis thaliana]) HSP 1 Score: 182.57 bits (462), Expect = 9.626e-49 Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
D+ F+++KS+ EN+VCFDC +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I + N+ L P T + V G+ SY E++P+
Sbjct: 11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|13430530|gb|AAK25887.1|AF360177_1 (unknown protein [Arabidopsis thaliana]) HSP 1 Score: 182.57 bits (462), Expect = 9.727e-49 Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
D+ F+++KS+ EN+VCFDC +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I + N+ L P T + V G+ SY E++P+
Sbjct: 11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|51968646|dbj|BAD43015.1| (unknown protein [Arabidopsis thaliana]) HSP 1 Score: 182.57 bits (462), Expect = 9.931e-49 Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
D+ F+++KS+ EN+VCFDC +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I + N+ L P T + V G+ SY E++P+
Sbjct: 11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|79325147|ref|NP_001031658.1| (ARF-GAP domain 8 [Arabidopsis thaliana] >gi|222423514|dbj|BAH19727.1| AT4G17890 [Arabidopsis thaliana] >gi|332658562|gb|AEE83962.1| ARF-GAP domain 8 [Arabidopsis thaliana]) HSP 1 Score: 181.8 bits (460), Expect = 1.016e-48 Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query: 9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
D+ F+++KS+ EN+VCFDC +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM GGN+ A FF++HG T GGK+E KY+SRAA+LY+ L+K VA I + N+ L P T + V G+ SY E++P+
Sbjct: 11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164 The following BLAST results are available for this feature:
BLAST of EWM25788.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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