EWM25788.1, cds4898 (CDS) Nannochloropsis gaditana

Overview
NameEWM25788.1
Unique Namecds4898
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:644868..644939 +
Alignment locationCM002464.1:645211..646641 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25788.1
Productadp-ribosylation factor gtpase-activating protein agd8
Orig transcript idgnl|cribi|Naga_100176g3.1057.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:644868..644939 +
CM002464.1supercontigCM002464.1:645211..646641 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005488binding
GO:0005096GTPase activator activity
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP
Homology
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|585107654|gb|EWM25788.1| (adp-ribosylation factor gtpase-activating protein agd8 [Nannochloropsis gaditana])

HSP 1 Score: 1029.24 bits (2660), Expect = 0.000e+0
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 0
Query:    1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA 500
            MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA
Sbjct:    1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPVGGAGSSDGDGLAPISREETTLSPPTASDAASEQEAEKSFAVAATCAPVQQPPARVAVQQDSRRSPTGTYNTLTRGAGELKLSTATGGGSTIVTEAGGCADLVVGGVSGTGSGMFKTGPRKSTVKGLGARKLGARKMGTEGAGASSGMASFEEAARQATEAQAAAKQAAQDREQAEKDRKVRELNAFLGHTPRSGTTMQDWAAPLPASPVVQEYRLALTREETGPSVSTGPLAAKFSTAKGIGSDQLFGNDEETADMRHERQTKLAGLHGARAISSDMYFGDGQDTDCVRGYNAGGPDVDELAAHAAERLRSVGQNVARGVGLLKDASSNFFESFRA 500          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|299473541|emb|CBN77936.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 187.963 bits (476), Expect = 1.577e-49
Identity = 82/144 (56.94%), Postives = 107/144 (74.31%), Query Frame = 0
Query:   12 AAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPP--PPTDTVVAVGCGLDNLM 153
            + F+R++S+ +N+VCFDCPTRNPTWASATYG+FICY+CSA HR +GVH+TFVRS++LD+W P ++  M+ GGN NA  FFR HGVT   K EQKY SRAA++Y++HL K +AD  V     + PP  P  + V +V  GLD LM
Sbjct:   13 STFRRLRSKADNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGV-----VTPPQSPREEPVDSVADGLDRLM 151          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|727554720|ref|XP_010449545.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Camelina sativa])

HSP 1 Score: 183.341 bits (464), Expect = 4.685e-49
Identity = 80/155 (51.61%), Postives = 108/155 (69.68%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPPTDTVVAVGCGLDNLMLSYQEPEDVP 163
            D+   F+++KS+ EN+VCFDC  +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAAELY+  L+K VA  I  + ++  P  P     +   G  N + SY   E++P
Sbjct:   11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILAKEVAKAIAEETSSGLPSSPVAAATSQLPGASNGVSSYSVKEELP 165          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|470128627|ref|XP_004300238.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Fragaria vesca subsp. vesca])

HSP 1 Score: 182.956 bits (463), Expect = 5.168e-49
Identity = 76/122 (62.30%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDA 130
            D+ A FK++KS+ EN++CFDC  +NPTWAS TYG+F+C +CSA HR+LGVHI+FVRS +LD WTP+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAAELY+  LSK VA  +V DA
Sbjct:    8 DKNAVFKKLKSKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLRTMTFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMVEDA 129          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|922531207|ref|XP_013597537.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica oleracea var. oleracea] >gi|923864526|ref|XP_013707636.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Brassica napus] >gi|674931765|emb|CDY01499.1| BnaC07g34890D [Brassica napus])

HSP 1 Score: 182.956 bits (463), Expect = 6.395e-49
Identity = 75/134 (55.97%), Postives = 103/134 (76.87%), Query Frame = 0
Query:    5 VTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPP 138
            ++++D+ A F+++KS+ +N+VCFDC  +NPTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  DA    P  P
Sbjct:    1 MSSSDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAIALPSSP 134          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|923553072|ref|XP_013737278.1| (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X1 [Brassica napus] >gi|923553076|ref|XP_013737279.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 isoform X2 [Brassica napus])

HSP 1 Score: 182.57 bits (462), Expect = 9.364e-49
Identity = 77/138 (55.80%), Postives = 101/138 (73.19%), Query Frame = 0
Query:    1 MSKYVTTADRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANALEPPPP 138
            MS      D+ A F+++KS+ +N+VCFDC  +NPTWAS TYG+F+C +CSATHR+LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  DA    P  P
Sbjct:    1 MSSSDNLTDKTAVFRKLKSKSDNKVCFDCSAKNPTWASVTYGIFLCIDCSATHRSLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKEVAKAIAEDAAIALPSSP 138          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|18414983|ref|NP_567543.1| (ARF-GAP domain 8 [Arabidopsis thaliana] >gi|75244593|sp|Q8H100.1|AGD8_ARATH RecName: Full=Probable ADP-ribosylation factor GTPase-activating protein AGD8; Short=ARF GAP AGD8; AltName: Full=Protein ARF-GAP DOMAIN 8; Short=AtAGD8 >gi|24030421|gb|AAN41368.1| unknown protein [Arabidopsis thaliana] >gi|51970716|dbj|BAD44050.1| unknown protein [Arabidopsis thaliana] >gi|51971433|dbj|BAD44381.1| unknown protein [Arabidopsis thaliana] >gi|62319827|dbj|BAD93852.1| hypothetical protein [Arabidopsis thaliana] >gi|62320091|dbj|BAD94263.1| hypothetical protein [Arabidopsis thaliana] >gi|110739292|dbj|BAF01559.1| hypothetical protein [Arabidopsis thaliana] >gi|332658561|gb|AEE83961.1| ARF-GAP domain 8 [Arabidopsis thaliana] >gi|1032283983|gb|OAO98310.1| AGD8 [Arabidopsis thaliana])

HSP 1 Score: 182.57 bits (462), Expect = 9.626e-49
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
            D+   F+++KS+ EN+VCFDC  +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  + N+  L  P  T  +  V  G+     SY   E++P+
Sbjct:   11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|13430530|gb|AAK25887.1|AF360177_1 (unknown protein [Arabidopsis thaliana])

HSP 1 Score: 182.57 bits (462), Expect = 9.727e-49
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
            D+   F+++KS+ EN+VCFDC  +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  + N+  L  P  T  +  V  G+     SY   E++P+
Sbjct:   11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|51968646|dbj|BAD43015.1| (unknown protein [Arabidopsis thaliana])

HSP 1 Score: 182.57 bits (462), Expect = 9.931e-49
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
            D+   F+++KS+ EN+VCFDC  +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  + N+  L  P  T  +  V  G+     SY   E++P+
Sbjct:   11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164          
BLAST of EWM25788.1 vs. NCBI_GenBank
Match: gi|79325147|ref|NP_001031658.1| (ARF-GAP domain 8 [Arabidopsis thaliana] >gi|222423514|dbj|BAH19727.1| AT4G17890 [Arabidopsis thaliana] >gi|332658562|gb|AEE83962.1| ARF-GAP domain 8 [Arabidopsis thaliana])

HSP 1 Score: 181.8 bits (460), Expect = 1.016e-48
Identity = 81/158 (51.27%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    9 DRMAAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKSHLSKLVADKIVMDANA--LEPPPPTDTVVAVGCGLDNLMLSYQEPEDVPV 164
            D+   F+++KS+ EN+VCFDC  +NPTWAS TYG+F+C +CSATHR LGVHI+FVRS +LD W+P+QL TM  GGN+ A  FF++HG T GGK+E KY+SRAA+LY+  L+K VA  I  + N+  L  P  T  +  V  G+     SY   E++P+
Sbjct:   11 DKNIVFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQLRTMMFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQILAKEVAKAIAEETNSGLLSSPVATSQLPEVSNGVS----SYSVKEELPL 164          
The following BLAST results are available for this feature:
BLAST of EWM25788.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107654|gb|EWM25788.1|0.000e+0100.00adp-ribosylation factor gtpase-activating protein ... [more]
gi|299473541|emb|CBN77936.1|1.577e-4956.94conserved unknown protein [Ectocarpus siliculosus][more]
gi|727554720|ref|XP_010449545.1|4.685e-4951.61PREDICTED: probable ADP-ribosylation factor GTPase... [more]
gi|470128627|ref|XP_004300238.1|5.168e-4962.30PREDICTED: probable ADP-ribosylation factor GTPase... [more]
gi|922531207|ref|XP_013597537.1|6.395e-4955.97PREDICTED: probable ADP-ribosylation factor GTPase... [more]
gi|923553072|ref|XP_013737278.1|9.364e-4955.80PREDICTED: probable ADP-ribosylation factor GTPase... [more]
gi|18414983|ref|NP_567543.1|9.626e-4951.27ARF-GAP domain 8 [Arabidopsis thaliana] >gi|752445... [more]
gi|13430530|gb|AAK25887.1|AF360177_19.727e-4951.27unknown protein [Arabidopsis thaliana][more]
gi|51968646|dbj|BAD43015.1|9.931e-4951.27unknown protein [Arabidopsis thaliana][more]
gi|79325147|ref|NP_001031658.1|1.016e-4851.27ARF-GAP domain 8 [Arabidopsis thaliana] >gi|222423... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4910rna4910Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications