EWM30188.1, cds489 (CDS) Nannochloropsis gaditana

Overview
NameEWM30188.1
Unique Namecds489
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1227862..1227928 -
Alignment locationCM002455.1:1227531..1227765 -
Alignment locationCM002455.1:1227232..1227355 -
Alignment locationCM002455.1:1226690..1227055 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30188.1
ProductNADH:ubiquinone oxidoreductase intermediate-associated protein 30
Orig transcript idgnl|cribi|Naga_100090g6.8837.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1227862..1227928 -
CM002455.1supercontigCM002455.1:1227531..1227765 -
CM002455.1supercontigCM002455.1:1227232..1227355 -
CM002455.1supercontigCM002455.1:1226690..1227055 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR013857NADH-UbQ_OxRdtase-assoc_prot30
Homology
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|585112846|gb|EWM30188.1| (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Nannochloropsis gaditana])

HSP 1 Score: 543.888 bits (1400), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MLRHIKELFRIPALQNGVAINKAPLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLRKPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKSQ 263
            MLRHIKELFRIPALQNGVAINKAPLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLRKPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKSQ
Sbjct:    1 MLRHIKELFRIPALQNGVAINKAPLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLRKPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKSQ 263          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|553180778|ref|XP_005853461.1| (hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526] >gi|422295599|gb|EKU22898.1| hypothetical protein NGA_0456400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 252.677 bits (644), Expect = 1.055e-75
Identity = 121/126 (96.03%), Postives = 121/126 (96.03%), Query Frame = 0
Query:   23 APLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFP 148
            APLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLE     P
Sbjct:  335 APLPILSIGNLDNDSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEPHHILP 460          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|813135503|ref|XP_012198512.1| (hypothetical protein SPRG_04716 [Saprolegnia parasitica CBS 223.65] >gi|641536944|gb|KDO30815.1| hypothetical protein SPRG_04716 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 118.627 bits (296), Expect = 1.857e-28
Identity = 74/224 (33.04%), Postives = 118/224 (52.68%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQ----KELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLR-KPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKS 262
            W V +DR+IGG+S  SFE   T +    ++D    ++   +A FSG LS      +  V R+GYCA++  +PR   + GYEGL + ++TDGR+Y  N + + + P +LY G++   P  +W+  +L F D  LT  G   Y+Q     +LD + +L +IG  +AD K GPF + I  + AV ++    +  KP +S    L  +       ++D+    R  KS
Sbjct:   49 WLVSSDRAIGGESTCSFEFVPTAD----DSDKEAPKV--GAAVFSGRLSLSVQPTEQHVVRSGYCAIRGNVPRGLHLHGYEGLAMRIKTDGRTYRINAQADGWNPHDLYMGFLKA-PANKWVEAELAFSDFILTSRG---YVQVDDPAKLDPS-SLRTIGIALADDKEGPFQISIEWIKAVEKVDTTNIAPKPRVSLKTELLDDDEIAPLEDDDQPKARRPRKS 261          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|669152224|ref|XP_008611674.1| (hypothetical protein SDRG_07607 [Saprolegnia diclina VS20] >gi|530736560|gb|EQC34802.1| hypothetical protein SDRG_07607 [Saprolegnia diclina VS20])

HSP 1 Score: 118.242 bits (295), Expect = 2.308e-28
Identity = 74/225 (32.89%), Postives = 117/225 (52.00%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQ----KELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLR-KPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKSQ 263
            W + +DR+IGG+S  +FE   T +      D      +  +A FSG LS      +  V R+GYCA++  +PR   + GYEGL + ++TDGR+Y  N + + + P +LY G++   P  +W+  +L F D  LT  G   Y+Q     +LD + +L +IG  +AD K GPF   I  + AV ++    +  KP +S    L  +   G  LE+D    A + K++
Sbjct:   49 WLISSDRAIGGESTCAFEFVPTAD------DSEKDSPKVGAAVFSGRLSLSVQPTEQHVVRSGYCAIRGNVPRGLHLHGYEGLAMRIKTDGRTYRINAQADGWNPHDLYMGFLKA-PANEWVEAELAFSDFILTSRG---YVQVDDPAKLDPS-SLRTIGIALADDKEGPFKFAIEWIKAVEKVDTTNVAPKPRVSLKTELLDDDEIGP-LEDDSSDDANTTKAR 261          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|1214693777|gb|OWZ08007.1| (NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Phytophthora megakarya])

HSP 1 Score: 116.316 bits (290), Expect = 1.348e-27
Identity = 71/189 (37.57%), Postives = 102/189 (53.97%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASF-------EVSTTGNHPINETDGHT-GEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSY-IQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRI 223
            W+  +DRSIGG SE  +       E   T   P      +   +   PSA FSG LS      +  V R+GYCA++  +P+   + GYEG+ + + TDGR Y  N+++ES+ P  LY G+I   P  +W+ I LPF+D  LT  G +    + ELD +  L+S+GF IAD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECQWGFYKGTKEQEATKEKPSTRLIHYVKNQDNVPSAVFSGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGITMRIMTDGREYRMNVQMESWNPFNLYMGFIR-TPANEWVDITLPFRDFLLTAKGFVKLDDETELDPS-KLKSVGFAIADQKEGEFELRIQWIKAVAQL 232          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|325180797|emb|CCA15207.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 114.39 bits (285), Expect = 2.319e-27
Identity = 67/220 (30.45%), Postives = 115/220 (52.27%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQCRPLRKPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKSQ 263
            W + TD+SIGG S+  ++ S+  N   ++++        P A FSG LS      +  V R+GYCA++   P+  ++ G +GL++ V+TDGR +  N++ E + P +++ G+I   P  +W+ I+LPF  + LT  G +      +     L +IGF I+D + GPF L +  + A+            M D    ++E+ +  +LEEDK +  R+   Q
Sbjct:    4 WVLSTDQSIGGLSQGQWKYSSVSNRTKHDSEESAAVDNLPCAVFSGRLSMACEPTEAGVVRSGYCAVRAPRPKEVQLFGSQGLQMRVKTDGRIFRVNIQTEGWNPFDIHMGFIRA-PPSKWVDIELPFSSLLLTSRGYVKMDDATVLYPSKLLNIGFAISDQEEGPFELRVQWIKAIA----------DMEDACD-ERERLSIDDLEEDKPSLPRNRSPQ 211          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|1173940280|gb|OQR89747.1| (queuine tRNA-ribosyltransferase [Thraustotheca clavata])

HSP 1 Score: 120.168 bits (300), Expect = 3.178e-27
Identity = 72/223 (32.29%), Postives = 114/223 (51.12%), Query Frame = 0
Query:   43 KWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYIQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRI---QCRPLRKPSMSDGNGLKKEKRAGTNLEEDKKTGARSEKS 262
            +W V +D++IGG S  SFE       P  E        +  +A FSGNLS      +  V R+GYCA++  +P++  + GY+GL + ++TDGR+Y  N + +S+ P +LY G++   P  +W+  +L F D  LT  G +        +  +L +IG  +AD   GPF + I  + A+  +   Q  P  KP++S    L +E      L +DK+   R  KS
Sbjct:  463 EWLVSSDQAIGGSSTCSFEFV-----PHEEMKDDKDAPQAGAAVFSGNLSLSIQPTEQYVVRSGYCAIRGNVPQNLHLHGYKGLAMRIKTDGRTYRINAQADSWNPHDLYMGFLKA-PANEWVEAELAFSDFILTSRGYVQMNDPTKLNPASLRTIGIALADDNEGPFSMAIEWIKAIENVDTTQVAP--KPNVSLKTDLLEEDEVHPELNQDKQEPKRPRKS 677          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|953489736|emb|CEG47102.1| (Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 112.079 bits (279), Expect = 9.535e-26
Identity = 69/199 (34.67%), Postives = 108/199 (54.27%), Query Frame = 0
Query:   36 DSSISKLKWSVFTDRSIGGKSEASFEVSTTGNHPINETDGHTGEI---------RPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSYI-QKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRIQ 224
            D+  S  +W+  +D+SIGG S+  +    TG  P+  +D    +I         R  SA F+GNLS      +  V R+GYCA++        + GYEG+ + + TDGR Y  N+++ES+ P  L+ G+I   P  +W+ I LPF++  LT  G +    + +LD +  L+SIGF IAD + G F L I  + AV +++
Sbjct:   72 DAKESVAEWTASSDKSIGGLSKCKWGF-YTGEEPMKASDDKASKIFIQNVKKQDRIASAVFTGNLSMDCQPTEAGVIRSGYCAVRASTSSDLLLHGYEGISMRIMTDGREYRMNIQMESWNPFNLFIGFIRT-PPNEWVDIDLPFRNFLLTAKGFVKITDETKLDPS-KLKSIGFAIADQREGEFELRIQWIKAVAQLK 267          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|566011483|gb|ETI34394.1| (hypothetical protein F443_19059 [Phytophthora parasitica P1569] >gi|567977718|gb|ETL28215.1| hypothetical protein L916_18383 [Phytophthora parasitica] >gi|568007184|gb|ETL81427.1| hypothetical protein L917_18211 [Phytophthora parasitica] >gi|568037026|gb|ETM34623.1| hypothetical protein L914_18296 [Phytophthora parasitica])

HSP 1 Score: 110.153 bits (274), Expect = 2.578e-25
Identity = 68/193 (35.23%), Postives = 101/193 (52.33%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASF------------EVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSY-IQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRI 223
            W+  +DRSIGG SE  +            E   T    I+           PSA F+G LS      +  V R+GYCA++  +P+   + GYEG+ + + TDGR Y  N+++ES+ P  L+ G+I   P  +W+ + LPF+D  LT  G +    + ELD +  L+S+GF IAD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGEQTEETIEDEQTSKRLIHHVKNQDN---VPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGIAMRIMTDGREYRMNVQMESWNPFNLHMGFIR-TPPNEWVDVTLPFRDFLLTAKGFVKLGDETELDPS-KLKSVGFAIADQKEGDFELRIQWIKAVAQL 233          
BLAST of EWM30188.1 vs. NCBI_GenBank
Match: gi|567949054|gb|ETK74788.1| (hypothetical protein L915_18482 [Phytophthora parasitica] >gi|570939036|gb|ETP04293.1| hypothetical protein F441_18867 [Phytophthora parasitica CJ01A1] >gi|570969311|gb|ETP32430.1| hypothetical protein F442_18840 [Phytophthora parasitica P10297])

HSP 1 Score: 110.153 bits (274), Expect = 3.213e-25
Identity = 68/193 (35.23%), Postives = 101/193 (52.33%), Query Frame = 0
Query:   44 WSVFTDRSIGGKSEASF------------EVSTTGNHPINETDGHTGEIRPPSATFSGNLSNMRPAADPTVKRTGYCALKVEMPRSFRVEGYEGLELTVRTDGRSYITNLEVESFFPDELYQGYITGLPGGQWLTIQLPFQDMTLTRLGRMSY-IQKELDSTFTLESIGFLIADGKTGPFCLEIANVAAVGRI 223
            W+  +DRSIGG SE  +            E   T    I+           PSA F+G LS      +  V R+GYCA++  +P+   + GYEG+ + + TDGR Y  N+++ES+ P  L+ G+I   P  +W+ + LPF+D  LT  G +    + ELD +  L+S+GF IAD K G F L I  + AV ++
Sbjct:   46 WTASSDRSIGGLSECKWGFYKGEQTEETIEDEQTSKRLIHHVKNQDN---VPSAVFTGRLSMDCQPTEVGVVRSGYCAVRASVPQELLLHGYEGIAMRIMTDGREYRMNVQMESWNPFNLHMGFIR-TPPNEWVDVTLPFRDFLLTAKGFVKLGDETELDPS-KLKSVGFAIADQKEGDFELRIQWIKAVAQL 233          
The following BLAST results are available for this feature:
BLAST of EWM30188.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112846|gb|EWM30188.1|0.000e+0100.00NADH:ubiquinone oxidoreductase intermediate-associ... [more]
gi|553180778|ref|XP_005853461.1|1.055e-7596.03hypothetical protein NGA_0456400, partial [Nannoch... [more]
gi|813135503|ref|XP_012198512.1|1.857e-2833.04hypothetical protein SPRG_04716 [Saprolegnia paras... [more]
gi|669152224|ref|XP_008611674.1|2.308e-2832.89hypothetical protein SDRG_07607 [Saprolegnia dicli... [more]
gi|1214693777|gb|OWZ08007.1|1.348e-2737.57NADH:ubiquinone oxidoreductase intermediate-associ... [more]
gi|325180797|emb|CCA15207.1|2.319e-2730.45conserved hypothetical protein [Albugo laibachii N... [more]
gi|1173940280|gb|OQR89747.1|3.178e-2732.29queuine tRNA-ribosyltransferase [Thraustotheca cla... [more]
gi|953489736|emb|CEG47102.1|9.535e-2634.67Uncharacterized conserved protein [Plasmopara hals... [more]
gi|566011483|gb|ETI34394.1|2.578e-2535.23hypothetical protein F443_19059 [Phytophthora para... [more]
gi|567949054|gb|ETK74788.1|3.213e-2535.23hypothetical protein L915_18482 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna489rna489Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications