EWM25789.1, cds4884 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|585107656|gb|EWM25789.1| (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana]) HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query: 1 MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE 324
MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE
Sbjct: 1 MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE 324
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|298711344|emb|CBJ32490.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 98.9821 bits (245), Expect = 3.422e-20 Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0
Query: 146 LDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNA-TALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRH-APSTSPECDWQWS------SLRCAPPSVCRFYFKLGDYHIGRSCRLR 294
D D++++LE + + +V TRLTP+TD EC WS+ + +C P C C++++ GDY R+CRL L CDP +D ++L + + + S F H P T +C + + L C P C F++K GD H GRSCRLR
Sbjct: 88 FDTDDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERELATCDPE--RGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242 HSP 2 Score: 63.1586 bits (152), Expect = 1.213e-7 Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0
Query: 224 LEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAEL 301
+ DE +L R RL+V+ + + R P T ECDW W RC P C++ ++ GDY GRSCRLR E EL
Sbjct: 88 FDTDDEALLERIGRLVVQWVNT------RLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGEREL 159
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|298705305|emb|CBJ48995.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.9442 bits (180), Expect = 6.495e-11 Identity = 52/171 (30.41%), Postives = 76/171 (44.44%), Query Frame = 0
Query: 147 DDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL----NRNATALGLC-------------------DPSGLEDSDE-NMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRL 293
++D KS+L+I + +YV T+ P TD EC +++S+ +C P C C + GDYT RACRL RN LC + SDE + G A+ +R AP + EC + + + RC P +CR F+ GD +CRL
Sbjct: 484 EEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPE---LCGSGVDGDDGGGSGGSSSDGGGGAWDPSDEPAVRRVVAAAAGALGGLRQAYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 651
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|1210530057|dbj|GAX11315.1| (hypothetical protein FisN_15Lh245 [Fistulifera solaris]) HSP 1 Score: 69.3218 bits (168), Expect = 1.547e-9 Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0
Query: 210 NRNATALGLCDPSGLEDSDENMLVRARRLL-VRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTV 296
+R+ + L D E+ + M+ R LL + G + + P T+PEC W W SL C P C F+ K GDYH+GRSCR+RT+
Sbjct: 170 HRSLKSSDLVDIEPKENPPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRVRTL 257 HSP 2 Score: 67.3958 bits (163), Expect = 6.578e-9 Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 0
Query: 101 SESHEGESSVP------LETIVERLEELER--RVQEEEE-------DDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLC---DPSGL 224
++S + E +VP L T+++ LEE+E+ V D E +E+P + +D++++L+I + A ++T ++ P+T+ EC W + C P C C F GDY L R+CR+ R G+C DP+ L
Sbjct: 134 AKSTQTEEAVPTFTIEQLRTLLQTLEEVEQVDTVHHHRSLKSSDLVDIEPKENPP---KVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRV-RTLKPPGICQSVDPAFL 271
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|1210528569|dbj|GAX12766.1| (hypothetical protein FisN_15Hh245 [Fistulifera solaris]) HSP 1 Score: 68.9366 bits (167), Expect = 1.646e-9 Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 0
Query: 210 NRNATALGLCDPSGLEDSDENMLVRARRLLVRGLG-SLDAFLDRHA-PSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTV 296
+R+ + L D +S ++V R L+ G + FL + P T+PEC W W SL C P C F+ K GDYH+GRSCR+RT+
Sbjct: 166 HRSWKSSDLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRVRTL 254 HSP 2 Score: 68.1662 bits (165), Expect = 2.972e-9 Identity = 54/202 (26.73%), Postives = 89/202 (44.06%), Query Frame = 0
Query: 45 EHFSEAKDAGESTSESAQY------SSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVP------LETIVERLEE------LERRVQEEEEDDEEREDPGFSLDS-LDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLC---DPSGL 224
E SE++D +S Y S+E + G +P A D + E+ E +VP L T+++ LEE + R + D + + P SL + +D++++L+I + A ++T ++ P+T+ EC W + C P C C F GDY L R+CR+ R G+C DP+ L
Sbjct: 76 ETTSESRDTSHESSVHTDYIHQIERESIENNTNIRGSYSPQHAG--------DVSSEQRDCAEEAKSKEEAVPTFTIEQLRTLLQTLEEGEKVDTVHRHRSWKSSDLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRV-RTLKPPGICQSVDPAFL 268
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|397613889|gb|EJK62481.1| (hypothetical protein THAOC_16909 [Thalassiosira oceanica]) HSP 1 Score: 68.1662 bits (165), Expect = 3.036e-9 Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 148 DDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL 209
+D+ + L++ ++ A + +T + P TD EC WS+ G+C P C+C FL GDY L R+CRL
Sbjct: 133 NDDATYLDLFAERAKELLTRHIIPYTDSECGWSWMSGRCEPYCKCSLMFLVGDYHLGRSCRL 194
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|223996625|ref|XP_002287986.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977102|gb|EED95429.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.3958 bits (163), Expect = 3.930e-9 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query: 148 DDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL 209
DD ++ L++ + A + +T + P TD EC WS+ G+C P C C + +L GDY L R+CRL
Sbjct: 71 DDEQTYLDLFGERAKELLTQHIIPATDAECRWSWRMGRCEPYCECGYHYLWGDYHLGRSCRL 132
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|219113361|ref|XP_002186264.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583114|gb|ACI65734.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 63.5438 bits (153), Expect = 8.793e-8 Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 147 DDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACR 208
++D++++L++ + +Y+TT++ P TD C W + +C PAC C F+ GDY L R+CR
Sbjct: 135 EEDDRTLLDVFGEVTKEYLTTKVIPDTDSSCRWDWRSTQCEPACACSFEAQWGDYHLGRSCR 196 The following BLAST results are available for this feature:
BLAST of EWM25789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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