EWM25789.1, cds4884 (CDS) Nannochloropsis gaditana

Overview
NameEWM25789.1
Unique Namecds4884
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:618873..619339 +
Alignment locationCM002464.1:619461..619967 +

Link to JBrowse

Properties
Property NameValue
End range.
End range619967
Protein idEWM25789.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100021g75.8732.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:618873..619339 +
CM002464.1supercontigCM002464.1:619461..619967 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|585107656|gb|EWM25789.1| (hypothetical protein Naga_100021g75, partial [Nannochloropsis gaditana])

HSP 1 Score: 655.981 bits (1691), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query:    1 MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE 324
            MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE
Sbjct:    1 MLLRRKPLISVLGVLACLMAVSIRLPLSTASKGDNEDGSIHFISEHFSEAKDAGESTSESAQYSSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVPLETIVERLEELERRVQEEEEDDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAELEAIEVAKARMMEEEEEEEEEEEE 324          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|298711344|emb|CBJ32490.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.9821 bits (245), Expect = 3.422e-20
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 0
Query:  146 LDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNA-TALGLCDPSGLEDSDENMLVRARRLLVRGLGSLDAFLDRH-APSTSPECDWQWS------SLRCAPPSVCRFYFKLGDYHIGRSCRLR 294
             D D++++LE + +    +V TRLTP+TD EC WS+ + +C P C C++++  GDY   R+CRL       L  CDP     +D ++L +    + +   S   F   H  P T  +C +  +       L C P   C F++K GD H GRSCRLR
Sbjct:   88 FDTDDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERELATCDPE--RGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRLR 242          

HSP 2 Score: 63.1586 bits (152), Expect = 1.213e-7
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 0
Query:  224 LEDSDENMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTVVEAEL 301
             +  DE +L R  RL+V+ + +      R  P T  ECDW W   RC P   C++ ++ GDY  GRSCRLR   E EL
Sbjct:   88 FDTDDEALLERIGRLVVQWVNT------RLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGEREL 159          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|298705305|emb|CBJ48995.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 6.495e-11
Identity = 52/171 (30.41%), Postives = 76/171 (44.44%), Query Frame = 0
Query:  147 DDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL----NRNATALGLC-------------------DPSGLEDSDE-NMLVRARRLLVRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRL 293
            ++D KS+L+I  +   +YV T+  P TD EC +++S+ +C P C C  +   GDYT  RACRL     RN     LC                        + SDE  +            G   A+ +R AP +  EC + + + RC P  +CR  F+ GD     +CRL
Sbjct:  484 EEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPE---LCGSGVDGDDGGGSGGSSSDGGGGAWDPSDEPAVRRVVAAAAGALGGLRQAYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 651          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|1210530057|dbj|GAX11315.1| (hypothetical protein FisN_15Lh245 [Fistulifera solaris])

HSP 1 Score: 69.3218 bits (168), Expect = 1.547e-9
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0
Query:  210 NRNATALGLCDPSGLEDSDENMLVRARRLL-VRGLGSLDAFLDRHAPSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTV 296
            +R+  +  L D    E+  + M+   R LL + G  +      +  P T+PEC W W SL C P   C F+ K GDYH+GRSCR+RT+
Sbjct:  170 HRSLKSSDLVDIEPKENPPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRVRTL 257          

HSP 2 Score: 67.3958 bits (163), Expect = 6.578e-9
Identity = 43/142 (30.28%), Postives = 73/142 (51.41%), Query Frame = 0
Query:  101 SESHEGESSVP------LETIVERLEELER--RVQEEEE-------DDEEREDPGFSLDSLDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLC---DPSGL 224
            ++S + E +VP      L T+++ LEE+E+   V            D E +E+P      + +D++++L+I  + A  ++T ++ P+T+ EC W +    C P C C F    GDY L R+CR+ R     G+C   DP+ L
Sbjct:  134 AKSTQTEEAVPTFTIEQLRTLLQTLEEVEQVDTVHHHRSLKSSDLVDIEPKENPP---KVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICECEFHLKFGDYHLGRSCRV-RTLKPPGICQSVDPAFL 271          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|1210528569|dbj|GAX12766.1| (hypothetical protein FisN_15Hh245 [Fistulifera solaris])

HSP 1 Score: 68.9366 bits (167), Expect = 1.646e-9
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 0
Query:  210 NRNATALGLCDPSGLEDSDENMLVRARRLLVRGLG-SLDAFLDRHA-PSTSPECDWQWSSLRCAPPSVCRFYFKLGDYHIGRSCRLRTV 296
            +R+  +  L D     +S   ++V   R L+   G +   FL +   P T+PEC W W SL C P   C F+ K GDYH+GRSCR+RT+
Sbjct:  166 HRSWKSSDLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRVRTL 254          

HSP 2 Score: 68.1662 bits (165), Expect = 2.972e-9
Identity = 54/202 (26.73%), Postives = 89/202 (44.06%), Query Frame = 0
Query:   45 EHFSEAKDAGESTSESAQY------SSVEAPEEVEGGVAPGKARGKARKIIPDKIRAVKTAVSESHEGESSVP------LETIVERLEE------LERRVQEEEEDDEEREDPGFSLDS-LDDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRLNRNATALGLC---DPSGL 224
            E  SE++D    +S    Y       S+E    + G  +P  A         D     +    E+   E +VP      L T+++ LEE      + R    +  D  + + P  SL   + +D++++L+I  + A  ++T ++ P+T+ EC W +    C P C C F    GDY L R+CR+ R     G+C   DP+ L
Sbjct:   76 ETTSESRDTSHESSVHTDYIHQIERESIENNTNIRGSYSPQHAG--------DVSSEQRDCAEEAKSKEEAVPTFTIEQLRTLLQTLEEGEKVDTVHRHRSWKSSDLVDNDKPNESLPKVMVEDDRTLLDIFGEAAKQFLTQKVIPETNPECKWDWRSLNCEPICDCEFHLKFGDYHLGRSCRV-RTLKPPGICQSVDPAFL 268          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|397613889|gb|EJK62481.1| (hypothetical protein THAOC_16909 [Thalassiosira oceanica])

HSP 1 Score: 68.1662 bits (165), Expect = 3.036e-9
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:  148 DDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL 209
            +D+ + L++ ++ A + +T  + P TD EC WS+  G+C P C+C   FL GDY L R+CRL
Sbjct:  133 NDDATYLDLFAERAKELLTRHIIPYTDSECGWSWMSGRCEPYCKCSLMFLVGDYHLGRSCRL 194          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|223996625|ref|XP_002287986.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977102|gb|EED95429.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.3958 bits (163), Expect = 3.930e-9
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0
Query:  148 DDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACRL 209
            DD ++ L++  + A + +T  + P TD EC WS+  G+C P C C + +L GDY L R+CRL
Sbjct:   71 DDEQTYLDLFGERAKELLTQHIIPATDAECRWSWRMGRCEPYCECGYHYLWGDYHLGRSCRL 132          
BLAST of EWM25789.1 vs. NCBI_GenBank
Match: gi|219113361|ref|XP_002186264.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209583114|gb|ACI65734.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 63.5438 bits (153), Expect = 8.793e-8
Identity = 23/62 (37.10%), Postives = 40/62 (64.52%), Query Frame = 0
Query:  147 DDDNKSMLEIVSQTAFDYVTTRLTPKTDRECSWSYSQGKCVPACRCRFQFLAGDYTLSRACR 208
            ++D++++L++  +   +Y+TT++ P TD  C W +   +C PAC C F+   GDY L R+CR
Sbjct:  135 EEDDRTLLDVFGEVTKEYLTTKVIPDTDSSCRWDWRSTQCEPACACSFEAQWGDYHLGRSCR 196          
The following BLAST results are available for this feature:
BLAST of EWM25789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585107656|gb|EWM25789.1|0.000e+0100.00hypothetical protein Naga_100021g75, partial [Nann... [more]
gi|298711344|emb|CBJ32490.1|3.422e-2035.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|298705305|emb|CBJ48995.1|6.495e-1130.41conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210530057|dbj|GAX11315.1|1.547e-938.64hypothetical protein FisN_15Lh245 [Fistulifera sol... [more]
gi|1210528569|dbj|GAX12766.1|1.646e-939.33hypothetical protein FisN_15Hh245 [Fistulifera sol... [more]
gi|397613889|gb|EJK62481.1|3.036e-941.94hypothetical protein THAOC_16909 [Thalassiosira oc... [more]
gi|223996625|ref|XP_002287986.1|3.930e-941.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219113361|ref|XP_002186264.1|8.793e-837.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4896rna4896Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications