EWM25811.1, cds4824 (CDS) Nannochloropsis gaditana

Overview
NameEWM25811.1
Unique Namecds4824
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:472097..473551 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25811.1
Productradical sam cfr family
Orig transcript idgnl|cribi|Naga_100021g6.8754.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:472097..473551 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0030488tRNA methylation
GO:0070475rRNA base methylation
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003723RNA binding
GO:0008173RNA methyltransferase activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR027492RNA_MTrfase_RlmN
IPR004383rRNA_lsu_MTrfase_RlmN/Cfr
IPR013785Aldolase_TIM
Homology
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|585107678|gb|EWM25811.1| (radical sam cfr family [Nannochloropsis gaditana])

HSP 1 Score: 993.801 bits (2568), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 0
Query:    1 MISAHFHRKLAGRGRAGGRLRRTLGRTFALLVMLIGALGSTVVRPRTVTACRSSSAFFASTGVLSIRRWQSAVPGRAYPPLPKKAKAVAVPAAAETDNTVVSRLPSALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA 484
            MISAHFHRKLAGRGRAGGRLRRTLGRTFALLVMLIGALGSTVVRPRTVTACRSSSAFFASTGVLSIRRWQSAVPGRAYPPLPKKAKAVAVPAAAETDNTVVSRLPSALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA
Sbjct:    1 MISAHFHRKLAGRGRAGGRLRRTLGRTFALLVMLIGALGSTVVRPRTVTACRSSSAFFASTGVLSIRRWQSAVPGRAYPPLPKKAKAVAVPAAAETDNTVVSRLPSALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA 484          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|553195215|ref|XP_005856103.1| (radical sam cfr family [Nannochloropsis gaditana CCMP526] >gi|422292938|gb|EKU20239.1| radical sam cfr family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 686.797 bits (1771), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:  152 MSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA 484
            MSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA
Sbjct:    1 MSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAATPPRSPEASSA 333          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|298705390|emb|CBJ28680.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 431.795 bits (1109), Expect = 1.027e-146
Identity = 210/345 (60.87%), Postives = 266/345 (77.10%), Query Frame = 0
Query:  127 LHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVL 471
            + +PK+RAKQV  W+++ GA SFE+M+++PK+LR  LA+   +G LEVA  QVSKDGT K AYRL+DGQ+IE+VLMPY DGRRTACISSQAGCAMGCVFC TGQMGF RQL+ +EIFEQA  FS++L K G+RLSNVVFMG GEPL N + V  AVRR+N +LGIGARHIT+STVGL PRI  L+              Q+K+AVSLHA  D ER A++PVNRRFP+SELM AC+ YV  + RR++FEWALI G+NDS +VA+ELGRLL PLKG CHVN+I +NPT G++G P    A+++F+ +L ++ G+PAT R+RRG+DI+AGCGQL  ++   E+  K L
Sbjct:    1 MGEPKFRAKQVLKWIFEGGAESFEDMANIPKTLRAKLAKVATVGALEVAARQVSKDGTKKLAYRLSDGQIIESVLMPYSDGRRTACISSQAGCAMGCVFCATGQMGFKRQLSAAEIFEQAYRFSQELQKRGDRLSNVVFMGMGEPLANYKNVMEAVRRINTELGIGARHITISTVGLVPRILRLSQEN----------IQVKLAVSLHAANDRERGALLPVNRRFPLSELMDACREYVDVSGRRMTFEWALIQGENDSAEVASELGRLLRPLKGMCHVNIIPLNPTDGYKGGPSMADAVNQFVEVLAKN-GVPATPRIRRGIDIDAGCGQLTAKVSQDEVLGKGL 334          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|551667788|ref|XP_005836654.1| (hypothetical protein GUITHDRAFT_85651 [Guillardia theta CCMP2712] >gi|428180808|gb|EKX49674.1| hypothetical protein GUITHDRAFT_85651 [Guillardia theta CCMP2712])

HSP 1 Score: 434.491 bits (1116), Expect = 1.192e-146
Identity = 216/360 (60.00%), Postives = 265/360 (73.61%), Query Frame = 0
Query:  109 TDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLS-------PLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNEL 461
             ++YAL++  +   L +   +PK+RAKQ+  W+  +GA  F++M DLPK LR  LAE   LG LE+A EQVSKDGT+KRAY+L DGQ+IE+VLMPY+DGRRTACISSQAGCAMGCVFC TGQMGFARQLT  EI EQ   F  +L   GERLSNVV MG GEPL N   V  AVRR+N DLGIGARHIT+STVGL PRIR LA+             QIK+AVSLHA  D ER AIMPVN RFP+++LM  C++YV++T RR+SFEWALI+GQND+P+VAN+LG LL         L   CHVN+I +NPT GF+G+P   A  D F+ IL++ +G+ AT RVRRG+DI+AGCGQLK++L
Sbjct:   49 VNLYALNQTRMEELLLD-WGEPKFRAKQIWQWINVKGATDFDKMQDLPKGLRAKLAEKAVLGNLEIAVEQVSKDGTIKRAYKLKDGQMIESVLMPYDDGRRTACISSQAGCAMGCVFCATGQMGFARQLTSVEILEQVQRFHVELLSKGERLSNVVLMGMGEPLGNYNNVMEAVRRINQDLGIGARHITISTVGLVPRIRRLAEEN----------MQIKLAVSLHAASDEERNAIMPVNLRFPLADLMETCKFYVEKTGRRISFEWALIAGQNDTPEVANKLGHLLKWNDFNPQGLNKMCHVNLIPLNPTAGFDGKPTKAAECDIFIKILSK-YGVTATTRVRRGIDIDAGCGQLKSKL 396          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|1176766109|gb|OQY84117.1| (23S rRNA (adenine(2503)-C(2))-methyltransferase [Anaerolineae bacterium UTCFX5])

HSP 1 Score: 414.846 bits (1065), Expect = 1.086e-139
Identity = 203/357 (56.86%), Postives = 264/357 (73.95%), Query Frame = 0
Query:  108 LTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTR 464
            + ++Y L+  EL   L  +  QP++RA QV +WLY + AA FE M+DLP+SLR  L++   LG L +A E+ S DGT KR Y L DGQLIE+VLMPY+D RRTACIS+QAGCAMGCVFC TGQMGFAR L+ +EI EQA+ F+R L + GERLSNVV MG GEP +N      AVRRL ADLGIGARHIT+STVGL P+IR  AD             Q+++A+SLHA  D ER+A++P+N+R+P++EL+ AC+  V++T RR++FEWALI+G+NDSP+ A+ LG LLS L   CHVN+I +NPT G+ G+P   AA+ RF++IL E + +PAT+RVRRG+DI+AGCGQLK  +L R
Sbjct:    2 MINLYELTRPELDSLL-TSWQQPRFRAGQVWSWLYDKLAADFESMTDLPESLRRQLSDTCTLGVLHIAAERASSDGTAKRVYELPDGQLIESVLMPYDDDRRTACISTQAGCAMGCVFCATGQMGFARHLSAAEIVEQAIHFARQLHREGERLSNVVLMGMGEPFHNYEASLAAVRRLMADLGIGARHITISTVGLVPQIRRFADEA----------LQVRLAISLHAATDDERSALLPINKRYPLAELLDACREVVEKTGRRVTFEWALIAGENDSPEQAHALGSLLSDL--NCHVNLIPLNPTGGYAGRPSDPAAVRRFIDIL-ETYHVPATVRVRRGIDIDAGCGQLKAAVLRR 344          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|1000260206|gb|KXK22906.1| (ribosomal RNA large subunit methyltransferase N [Chloroflexi bacterium OLB15])

HSP 1 Score: 405.601 bits (1041), Expect = 5.000e-136
Identity = 203/357 (56.86%), Postives = 256/357 (71.71%), Query Frame = 0
Query:  108 LTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTR 464
            + D+Y L +  L   L     +P++RA Q+  WLY R  ASF EM++LP  LR  L    +LG L +  EQ S DGTVKR Y L DGQ IEAVLM Y+D RRTACIS+QAGCAMGCVFC TGQMGFAR LT  EIFEQA+L++RDL   G+RLSNVV MG GEP +N      AVRRL +DL +GARHITVSTVGL P IR  AD       EG    Q+K+A+SLHA  D ER A++PVNR++P+ EL++AC+YY  ++ RR+SFEW LI G+ND+P+ A +LG+LL  L   CHVNVI +NPTTG+ G P ++  + +F+NIL E  GIPAT+R+RRG+DI+AGCGQLK+++L R
Sbjct:    1 MIDLYTLDKPALETLLA-VWDEPRFRADQLWNWLYDRRVASFAEMTNLPIRLRQRLEAETQLGSLVLEDEQSSHDGTVKRLYSLHDGQFIEAVLMEYDDDRRTACISTQAGCAMGCVFCATGQMGFARNLTADEIFEQAMLYARDLAARGDRLSNVVLMGMGEPFHNYDNAIHAVRRLMSDLELGARHITVSTVGLVPMIRRFAD-------EGL---QVKLAISLHAATDEERGALLPVNRKYPLRELISACRYYTDKSGRRISFEWTLIQGENDTPEQAEKLGQLLRGL--NCHVNVIPLNPTTGYGGHPSAQGRIQQFINILGEH-GIPATVRIRRGIDIDAGCGQLKSKVLKR 343          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|873231005|emb|CEM09761.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 388.652 bits (997), Expect = 2.061e-129
Identity = 194/340 (57.06%), Postives = 248/340 (72.94%), Query Frame = 0
Query:  129 QPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGK---CHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRE 465
             P YRAKQ+   LY+R A SF+ M++LPK++R  L      G L VA E+VS+DGT+KRAY L DGQ+IE+VLMPY+DGRRTACISSQAGCAMGCVFC TGQMGFARQL+ +EI EQAL+F+R+L + GERLSNVV MG GEPL N      AV R+N DLG+G RHITVSTVGL  RI+ +AD     EG      Q+ +AVSLHA  D +R+A++P+N++ PI ++M AC YY  +T RR+SFEWALI+G+ D+PQ A++LGRLLS    +    HVN+I VNPT G++G+P S  A+  F++ L    G+ AT R+RRG+DI  GCGQLK E + R+
Sbjct:   13 HPAYRAKQIWQHLYERRAGSFDAMTNLPKTMRDDLKASLTFGDLMVADERVSRDGTLKRAYVLRDGQVIESVLMPYKDGRRTACISSQAGCAMGCVFCATGQMGFARQLSSAEIVEQALIFARELHQRGERLSNVVLMGMGEPLANYDNAMEAVERINHDLGVGMRHITVSTVGLPERIKQIAD-----EGR-----QVTLAVSLHAASDQQRSALIPINKKHPIQQVMQACVYYCGKTGRRISFEWALIAGETDTPQQADQLGRLLSRAMRQGLIGHVNLIPVNPTEGYDGRPSSPLAVSSFIDTLKRH-GVGATARLRRGIDIEGGCGQLKAETIKRQ 341          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|224003697|ref|XP_002291520.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973296|gb|EED91627.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 365.155 bits (936), Expect = 1.820e-120
Identity = 184/333 (55.26%), Postives = 235/333 (70.57%), Query Frame = 0
Query:  130 PKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRF-PISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGK---CHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLK 458
            P +RA+Q+H W++ +G  S ++MSDLP  LR  L E   +G L +  EQVS+DGT KRAY+L DGQ+IE+VLMPYEDGRRTAC+SSQAGCAMGCVFC TGQMGFARQLT  EIFEQ   F+ +L   GERLSNVV MG GEPL N R V  A+ R+N DLGIGAR IT+STVG+ P I+ L +  +D         Q+++A+SLH   D ERTA++P NRR+  + ELM   + Y++    R++FEWALI GQNDS  VA  LGRLL     +    HVN+I +NPT G+ G P  +  + RF+ +L +++GI AT R+RRG+DI+AGCGQLK
Sbjct:   19 PAFRARQIHNWIFSQGVTSIDDMSDLPLKLRTMLKERATVGSLHLEVEQVSQDGTRKRAYKLHDGQMIESVLMPYEDGRRTACVSSQAGCAMGCVFCATGQMGFARQLTSDEIFEQVATFANELKGEGERLSNVVMMGMGEPLANYRNVLAAMHRMNTDLGIGARKITISTVGVVPNIKKLIE--EDL--------QVRLALSLHCATDEERTALLPANRRYGGLDELMTTIREYIRVKKMRVTFEWALIEGQNDSKDVARTLGRLLQKHDIRPDMAHVNLIPLNPTGGYGGGPSGRNNVHRFVEVLEKEFGISATPRMRRGIDIDAGCGQLK 341          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|922887542|gb|KOO53110.1| (ribosomal RNA large subunit methyltransferase n [Chrysochromulina sp. CCMP291])

HSP 1 Score: 367.851 bits (943), Expect = 2.751e-120
Identity = 190/349 (54.44%), Postives = 238/349 (68.19%), Query Frame = 0
Query:  110 DIYALSEQELCGFLQNTLHQPKYRAKQVHAWLY-QRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDLTKGGERLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRFPISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSPLKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQL 457
            ++Y LS+ EL   L+    + K+R KQ+   +Y    A   + M  LPK LR  L  H  LG LE A E  S+DGT KR +R  DG LIE+VLMPY D RRTACISSQ GCAMGC FC TGQMGF R L+E+EIFEQA  FS +L    ERLSN+VFMG GEP  N   V GA RR+ ++LGIGARH+T+STVGL P+IR  AD       EG     I +A+SLH + D  R+AIMPVNRR+ + EL+ AC+YYV  + RR+SFEWALI+G+ND  + A +L +LL  L   CHVN+I +NPT GF+G P S    D+F+ +L + +GIPAT+RVRRG+DI+AGCGQL
Sbjct:   58 NLYGLSDNELSALLEG-WGEKKFRLKQIRDAMYGDSPAVDIQSMQTLPKELRAKLEAHATLGELETAKEIDSRDGTRKRLWRCHDGSLIESVLMPYRDNRRTACISSQVGCAMGCTFCATGQMGFKRDLSEAEIFEQAARFSAELRAKDERLSNIVFMGMGEPFRNYDAVLGAARRIISELGIGARHLTISTVGLVPQIRRFAD-------EGL---AIGLAISLHESSDDARSAIMPVNRRYDLEELLDACRYYVDTSGRRISFEWALIAGRNDDRESAQQLAQLLKGL--NCHVNLIPLNPTNGFDGAPTSLPNADKFVAVLGK-YGIPATVRVRRGIDIDAGCGQL 392          
BLAST of EWM25811.1 vs. NCBI_GenBank
Match: gi|1210527053|dbj|GAX14183.1| (23S rRNA (adenine2503-C2)-methyltransferase [Fistulifera solaris])

HSP 1 Score: 366.696 bits (940), Expect = 4.982e-119
Identity = 193/385 (50.13%), Postives = 254/385 (65.97%), Query Frame = 0
Query:  106 SALTDIYALSEQELCGFLQNTLHQPKYRAKQVHAWLYQRGAASFEEMSDLPKSLRLGLAEHFKLGCLEVAFEQVSKDGTVKRAYRLADGQLIEAVLMPYEDGRRTACISSQAGCAMGCVFCQTGQMGFARQLTESEIFEQALLFSRDL--------TKGGE-----RLSNVVFMGEGEPLNNRRQVFGAVRRLNADLGIGARHITVSTVGLAPRIRDLADAVDDPEGEGALLSQIKVAVSLHATRDAERTAIMPVNRRF-PISELMAACQYYVQRTNRRLSFEWALISGQNDSPQVANELGRLLSP---LKGKCHVNVINVNPTTGFEGQPGSKAAMDRFLNILNEDWGIPATMRVRRGLDINAGCGQLKNELLTRELSAKVLAA 473
            S   ++  +++++L   + +  H P++RA QV  W+  +G  + EEM+++PK LR  LAE+ K   LE+A E  SKDGT+KRAYR  DGQLIE+VLMPYEDGR TACISSQAGCA GCVFC TGQMGF+RQLT  EIFEQ   F+ +         TK  +     RLSNVVFMG GEPL N R V  A+ R+  DLGIGAR ITVSTVG+ P IR L     DP      + Q+++AVSLH   D ER  ++P N+R+  + ELM   + Y++ T RR++ EWALI+G+ND+P+ A +L RL+      K   HVNVI +NPT GF G P  +  ++ F+N L +D+GI  T RVRRG+DI+AGCGQLK+++L +EL    L A
Sbjct:   38 SKFINLSTVTKKDLETVITSWGH-PRFRADQVWNWIRDKGVTNVEEMNNIPKKLRQQLAEYSKPTSLELASELRSKDGTIKRAYRCYDGQLIESVLMPYEDGRYTACISSQAGCAQGCVFCATGQMGFSRQLTADEIFEQVARFAAESQHEDVVHETKSKQHGRSNRLSNVVFMGMGEPLANYRHVSTAINRITQDLGIGARKITVSTVGIVPNIRKL---TTDPN-----MPQVRLAVSLHCATDEERDVLLPANKRYGGLDELMGCLREYIEVTGRRVTLEWALIAGENDTPETARKLARLIQKSRLRKDMVHVNVIPLNPTGGFGGNPSDRKRVNDFVNTLEKDFGIACTPRVRRGIDIDAGCGQLKSKVLEKELQDTRLKA 413          
The following BLAST results are available for this feature:
BLAST of EWM25811.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107678|gb|EWM25811.1|0.000e+0100.00radical sam cfr family [Nannochloropsis gaditana][more]
gi|553195215|ref|XP_005856103.1|0.000e+0100.00radical sam cfr family [Nannochloropsis gaditana C... [more]
gi|298705390|emb|CBJ28680.1|1.027e-14660.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|551667788|ref|XP_005836654.1|1.192e-14660.00hypothetical protein GUITHDRAFT_85651 [Guillardia ... [more]
gi|1176766109|gb|OQY84117.1|1.086e-13956.8623S rRNA (adenine(2503)-C(2))-methyltransferase [A... [more]
gi|1000260206|gb|KXK22906.1|5.000e-13656.86ribosomal RNA large subunit methyltransferase N [C... [more]
gi|873231005|emb|CEM09761.1|2.061e-12957.06unnamed protein product [Vitrella brassicaformis C... [more]
gi|224003697|ref|XP_002291520.1|1.820e-12055.26predicted protein, partial [Thalassiosira pseudona... [more]
gi|922887542|gb|KOO53110.1|2.751e-12054.44ribosomal RNA large subunit methyltransferase n [C... [more]
gi|1210527053|dbj|GAX14183.1|4.982e-11950.1323S rRNA (adenine2503-C2)-methyltransferase [Fistu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4836rna4836Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications