EWM25827.1, cds4822 (CDS) Nannochloropsis gaditana

Overview
NameEWM25827.1
Unique Namecds4822
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:467521..469048 -
Alignment locationCM002464.1:466919..467244 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25827.1
Productconserved oligomeric golgi complex subunit 4 isoform 1
Orig transcript idgnl|cribi|Naga_100021g4.8770.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:467521..469048 -
CM002464.1supercontigCM002464.1:466919..467244 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013167COG_su4
Homology
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|585107694|gb|EWM25827.1| (conserved oligomeric golgi complex subunit 4 isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 1266.91 bits (3277), Expect = 0.000e+0
Identity = 617/617 (100.00%), Postives = 617/617 (100.00%), Query Frame = 0
Query:    1 MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSGASSGFSDHVWSDIVYRHSVKAWCHSSPRSCLFWWAASFVVSGVVL 617
            MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSGASSGFSDHVWSDIVYRHSVKAWCHSSPRSCLFWWAASFVVSGVVL
Sbjct:    1 MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSGASSGFSDHVWSDIVYRHSVKAWCHSSPRSCLFWWAASFVVSGVVL 617          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|585107693|gb|EWM25826.1| (conserved oligomeric golgi complex subunit 4 isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 1170.22 bits (3026), Expect = 0.000e+0
Identity = 572/572 (100.00%), Postives = 572/572 (100.00%), Query Frame = 0
Query:    1 MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG 572
            MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG
Sbjct:    1 MADGQEPFFQLPPSPVIDEASDGVASPPEPEESSTDPFTEAIVRFHMTLAEVQQQHNRPLSELQTEKYRKNKENDNIDEKLLAGRDVAAPALGRLMEDLDGIRAEMYVGDTAAETSPEQKDVQQEMLEDCERKTGDVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG 572          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|553195311|ref|XP_005856124.1| (component of oligomeric golgi complex 4 [Nannochloropsis gaditana CCMP526] >gi|422292959|gb|EKU20260.1| component of oligomeric golgi complex 4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 681.789 bits (1758), Expect = 0.000e+0
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query:  240 MIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG 572
            MIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG
Sbjct:    1 MIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSARGTEDLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEAMIYAINSMDCAVAAMKKMQDMLLELGVRGSCEGESQQRARGGPHMVEAVAQEFGRVLKQYGGYLEVLLDDFASRYVSSG 333          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|299473571|emb|CBN77966.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.1225 bits (222), Expect = 2.157e-15
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 0
Query:  345 NRYLAFVA----APREECMDLFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSV-PSFAAALQALVEDR 459
            +RYL FVA     P ++  + + QV+ + G YV +E AYC  +V +A+   +P EVQ+G  VS++VED   ++++S+ R+  T S+QAI+AV +R TE+L P +  PSF   L    + R
Sbjct:    9 HRYLDFVADDLGLPEDQSSEFYAQVRLIEGAYVQLEDAYCLRSVEEAMRIAEPIEVQDGTYVSSMVEDASFLVHKSLRRSVSTRSEQAIMAVCNRVTEILDPHAPEPSFFGGLATEADHR 128          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|566030149|gb|ETI53060.1| (hypothetical protein F443_03933, partial [Phytophthora parasitica P1569])

HSP 1 Score: 80.8777 bits (198), Expect = 9.305e-13
Identity = 89/335 (26.57%), Postives = 149/335 (44.48%), Query Frame = 0
Query:  118 EQKDVQQEMLEDCERKTG---DVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGP-CLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSA---------RGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAV 432
            E   V+ EML +CE K     D  L+ L++A +    D  AA   F  C  L    +A   +   L    I +T+ A  +LD VR       GS  +   +  G   D   +V  LS LL  A+ ++ ++                            +   + P  L +++  ++    + AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN++  RA+Q ++    L++
Sbjct:   42 EAAAVRDEMLRNCEAKAQTLQDTALSRLQQACAGSDVDVDAALTAFTRCAALNAAQEAVPKFSSCLSG--IFATQ-ARASLDRVR-------GSKQAAKVNEHGYI-DRAFYVESLSELLTGATDIMNAV----------------------------ADVTADPLVLKQILEPIHASCAKIALQMVQMYADDARMVAWERRANSQAQRDPRHVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSI 337          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|301123221|ref|XP_002909337.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100099|gb|EEY58151.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.6481 bits (200), Expect = 1.360e-12
Identity = 107/398 (26.88%), Postives = 174/398 (43.72%), Query Frame = 0
Query:  126 MLEDCERKTG---DVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGPCLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLS---------ARGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVAS-----------RATELLSPDSVPSFA-AALQALVEDRSLTGVEAGGGAMD--------QFSRALQQQLDE 484
            ML  CE K     D  L+ L++A +    D  AA A F  CV L    +A + +   L    I +T+ A  +LD VR       GS  +   +  G   D   +V  LS LL  A+ ++ ++         + + D +                    L +++  ++    + AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN++  RA+Q ++    L++             +A  +L      SF+   LQA+ ED   T  E     M         +F RALQ ++DE
Sbjct:   31 MLRSCEAKAQSLQDTALSHLQQACAGSNVDVDAALAAFARCVFLGAAREAVSKFSSCLSG--IFATQ-ARASLDRVR-------GSKQAAKANEHGYI-DRAFYVKSLSELLTGATDIMNAVA--------DVTADPQV-------------------LKQVLEPIHVSCAEIALQMVQMYADDARMVAWERRANSQAQRDPRRVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSIVIAIVDALESQYLQAILVLPSRPCVSFSDMLLQAVDEDLERTLQEEARPIMTINSAFASGEFVRALQDKIDE 390          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|566030163|gb|ETI53074.1| (hypothetical protein F443_03930 [Phytophthora parasitica P1569] >gi|568055893|gb|ETM52627.1| hypothetical protein L914_03785 [Phytophthora parasitica])

HSP 1 Score: 79.337 bits (194), Expect = 8.052e-12
Identity = 105/407 (25.80%), Postives = 173/407 (42.51%), Query Frame = 0
Query:  122 VQQEMLEDCERKTG---DVVLNLLRKATSAIAPDPAAAPAWFLECVRLKQETKAANIYGGFLQRRLIESTEDALQALDSVRSLRRLQMGSSNSQADDSEGVGQDSQPHVTGLSRLLGEASRMIGSLRGEGYYCEDESSQDAETGTAGSRHAARFSSWLSGP-CLARMVTSLNNIAQQQALKLLKWYSEDCSVREWQERCLSA---------RGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPD------SVPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEA--MIYAINS 500
            V+ EML +CE K     D  L+ L++A +    D  AA   F  C  L    +A   +   L    I +T+ A  +LD VR       GS  +   +  G   D   +V  LS LL  A+ ++ ++                            +   + P  L +++  ++    + AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN++  RA+Q ++    L++     + L          +PS    +  L    + TG +        FS  L Q +DE+      E   +I  INS
Sbjct:   46 VRDEMLRNCEAKAQTLQDTALSRLQQACAGSDVDVDAALTAFTRCAALNAAQEAVPKFSSCLSG--IFATQ-ARASLDRVR-------GSKQAAKVNEHGYI-DRAFYVESLSELLTGATDIMNAV----------------------------ADVTADPLVLKQILEPIHASCAKIALQMVQMYADDARMVAWERRANSQAQRDPRHVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSIVIAIVDALESQYLQAILVLPSRPCVI-PLSSINAATGQDGNNEQEVSFSDMLLQAVDEDLQRTLQEEARLIMTINS 412          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|570993515|gb|ETP50855.1| (hypothetical protein F442_03921 [Phytophthora parasitica P10297])

HSP 1 Score: 77.411 bits (189), Expect = 3.182e-11
Identity = 70/235 (29.79%), Postives = 112/235 (47.66%), Query Frame = 0
Query:  296 ALKLLKWYSEDCSVREWQERCLSA---------RGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDSVPSFAAALQALVEDRS------LTGVEAGGGAMDQ------FSRALQQQLDEEEGNVTHEA--MIYAINS 500
            AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN++  RA+Q ++    L++     + L        +  LQA++   S      L+ + A  G  D       FS  L Q +DE+      E   +I  INS
Sbjct:  185 ALQMVQMYADDARMVAWERRANSQAQRDPRHVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSIVIAIVDALE-------SQYLQAILVLPSRPCVIPLSSINAATGQDDNNEQEVSFSDMLLQAVDEDLQRTLQEEARLIMTINS 412          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|970655693|gb|KUF93815.1| (hypothetical protein AM587_10010445 [Phytophthora nicotianae])

HSP 1 Score: 76.6406 bits (187), Expect = 5.407e-11
Identity = 67/229 (29.26%), Postives = 109/229 (47.60%), Query Frame = 0
Query:  296 ALKLLKWYSEDCSVREWQERCLSA---------RGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS------VPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEA--MIYAINS 500
            AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN+++ RA+Q ++    L++     + L          +PS    +  L    + TG +        FS  L Q +DE+      E   +I  INS
Sbjct:  185 ALQMVQMYADDARMVAWERRANSQAQRDPRHVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKALFRASQCMNYHTALSIVIAIVDALESQYLQAILVLPSRPCVI-PLSSINAATGQDGNNEQEVSFSDMLLQAVDEDLQRTLQEEARLIMTINS 412          
BLAST of EWM25827.1 vs. NCBI_GenBank
Match: gi|675184513|ref|XP_008901141.1| (hypothetical protein PPTG_07996 [Phytophthora parasitica INRA-310] >gi|568098330|gb|ETN13057.1| hypothetical protein PPTG_07996 [Phytophthora parasitica INRA-310])

HSP 1 Score: 76.2554 bits (186), Expect = 7.588e-11
Identity = 67/229 (29.26%), Postives = 108/229 (47.16%), Query Frame = 0
Query:  296 ALKLLKWYSEDCSVREWQERCLSA---------RGTE---DLVVQELDFALDELQLVLGLSNRYLAFVAAPREECMD----LFIQVQELAGCYVSMESAYCTFNVAKAIAWGQPTEVQEGVLVSTLVEDVPMILNRSIERATQTLSDQAILAVASRATELLSPDS------VPSFAAALQALVEDRSLTGVEAGGGAMDQFSRALQQQLDEEEGNVTHEA--MIYAINS 500
            AL++++ Y++D  +  W+ R  S           G E   D  +Q +D  LDEL  ++ +   Y AF+A   E          ++VQEL+G YV +E  Y   +V KA A  +P E+++GV VS++VEDV  +LN++  RA+Q ++    L++     + L          +PS    +  L    + TG +        FS  L Q +DE+      E   +I  INS
Sbjct:  185 ALQMVQMYADDARMVAWERRANSQAQRDPRHVLEGDEVEADESLQMIDLFLDELAFIIRVLVSYTAFLATVCEGLGQKDGGFQVKVQELSGVYVVLERFYVFQSVHKATAIAEPQELEQGVYVSSVVEDVSFVLNKAFFRASQCMNYHTALSIVIAIVDALESQYLQAILVLPSRPCVI-PLSSINAATGQDGNNEQEVSFSDMLLQAVDEDLQRTLQEEARLIMTINS 412          
The following BLAST results are available for this feature:
BLAST of EWM25827.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107694|gb|EWM25827.1|0.000e+0100.00conserved oligomeric golgi complex subunit 4 isofo... [more]
gi|585107693|gb|EWM25826.1|0.000e+0100.00conserved oligomeric golgi complex subunit 4 isofo... [more]
gi|553195311|ref|XP_005856124.1|0.000e+0100.00component of oligomeric golgi complex 4 [Nannochlo... [more]
gi|299473571|emb|CBN77966.1|2.157e-1539.17conserved unknown protein [Ectocarpus siliculosus][more]
gi|566030149|gb|ETI53060.1|9.305e-1326.57hypothetical protein F443_03933, partial [Phytopht... [more]
gi|301123221|ref|XP_002909337.1|1.360e-1226.88conserved hypothetical protein [Phytophthora infes... [more]
gi|566030163|gb|ETI53074.1|8.052e-1225.80hypothetical protein F443_03930 [Phytophthora para... [more]
gi|570993515|gb|ETP50855.1|3.182e-1129.79hypothetical protein F442_03921 [Phytophthora para... [more]
gi|970655693|gb|KUF93815.1|5.407e-1129.26hypothetical protein AM587_10010445 [Phytophthora ... [more]
gi|675184513|ref|XP_008901141.1|7.588e-1129.26hypothetical protein PPTG_07996 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4834rna4834Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications