EWM25791.1, cds4818 (CDS) Nannochloropsis gaditana

Overview
NameEWM25791.1
Unique Namecds4818
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:459160..460425 -

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Properties
Property NameValue
Start range459160
Start range.
Protein idEWM25791.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100021g1.8734.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:459160..460425 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25791.1 vs. NCBI_GenBank
Match: gi|585107658|gb|EWM25791.1| (hypothetical protein Naga_100021g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 854.744 bits (2207), Expect = 0.000e+0
Identity = 422/422 (100.00%), Postives = 422/422 (100.00%), Query Frame = 0
Query:    1 MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQRREEAAEEGGHWTLAQVRSVCDLYKQATERFGSVSSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVFGRVGRRGHGV 422
            MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQRREEAAEEGGHWTLAQVRSVCDLYKQATERFGSVSSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVFGRVGRRGHGV
Sbjct:    1 MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQRREEAAEEGGHWTLAQVRSVCDLYKQATERFGSVSSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVFGRVGRRGHGV 422          
BLAST of EWM25791.1 vs. NCBI_GenBank
Match: gi|553195315|ref|XP_005856125.1| (hypothetical protein NGA_0334500 [Nannochloropsis gaditana CCMP526] >gi|422292960|gb|EKU20261.1| hypothetical protein NGA_0334500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 828.165 bits (2138), Expect = 0.000e+0
Identity = 409/412 (99.27%), Postives = 409/412 (99.27%), Query Frame = 0
Query:    1 MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQRREEAAEEGGHWTLAQVRSVCDLYKQATERFGSVSSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVF 412
            MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQ REEAAEEGGHWTLAQVRSVCDLYKQATERFGS SSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEV 
Sbjct:    1 MTDSSDPAPVSPTSIWSSRMPRELASLEEKLRRGTSTRTCRVTVLSKTLDNDNGVCKCTVMLNRRDEQADDRGPDEDEPLDLGETGGVLLEVDASSRPATGEGTGVSGATAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKVGLADLVLAAAEAVQGFEGAHDEDPETRGYEPNHVLDVRHLGDRLFPGSVPQQGGDMLPRYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQXREEAAEEGGHWTLAQVRSVCDLYKQATERFGSFSSEESIARTGEAVGRLQSFLSRPEVQDLLARTASPTGAEPPDSDESPDPEGSGTLSSPPARKGEVL 412          
BLAST of EWM25791.1 vs. NCBI_GenBank
Match: gi|299116134|emb|CBN76043.1| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 107.071 bits (266), Expect = 2.551e-21
Identity = 83/286 (29.02%), Postives = 132/286 (46.15%), Query Frame = 0
Query:  110 TAYPFVPPIINVIQGIDLLPAAYVGEDGRTLLLAALRAWTPKV-------GLADLVLAAAEA-VQGFEGAHDEDPETRG-YEPNHVLDVRHLGDRLFPGSVPQ----QGGDMLP-------RYLVVTEAWVLNVKAHEAKLGSVVVVKARPQAHIGKLRYKQGCSISVEFRDGDRWLLAMSRAQECVEAIQEALRARGVVGFRTSQAALNHVARAQAYLQEAQRREEAAEEGGHWTLAQVRSVCDLYKQATERFGSVSSEESIARTGEAVGRLQSFLSRPEVQDLL 375
            T YPF  P+I V++G D++P + +  DG  L L    AWTP          +AD+VL A EA +   +G  D     RG   P  ++    L   LFP S P      G  + P       RY+ VT+  +L ++AH  ++   VVV A P +++ KL++++G S++V  +  +       ++ ECV+A+ E L   G+ G +T+  A   V  A + +    R+E          L  V    DL++QA E + +        R  E +  +  FL R +V   L
Sbjct:  158 TRYPFECPVIRVLEGDDVMPTSILSGDG-LLSLPGSDAWTPSSTIVNTLQDIADMVLHAKEAGLPTGQGGDDAGALERGELRPGALVGTEALSGCLFPCSPPAAPLFSGSVLAPGSRRPLDRYVGVTDRQLLELEAHRTRMNKTVVVLAIPLSNLKKLKFRRGASVTVILKTDEAKEFLTPQSYECVQAVTERLEKMGIAGHQTTAGAERQVDHASSLMAALGRKEAQFGVRERPDLTLVEECMDLFRQAAELYSAADD----PRHEEVLAHMHRFLQREDVLSAL 438          
The following BLAST results are available for this feature:
BLAST of EWM25791.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107658|gb|EWM25791.1|0.000e+0100.00hypothetical protein Naga_100021g1, partial [Nanno... [more]
gi|553195315|ref|XP_005856125.1|0.000e+099.27hypothetical protein NGA_0334500 [Nannochloropsis ... [more]
gi|299116134|emb|CBN76043.1|2.551e-2129.02conserved unknown protein (Partial), partial [Ecto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4830rna4830Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications