EWM25860.1, cds4812 (CDS) Nannochloropsis gaditana

Overview
NameEWM25860.1
Unique Namecds4812
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:451306..452040 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25860.1
Productthioredoxin domain-containing protein 9
Orig transcript idgnl|cribi|Naga_100054g34.5552.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:451306..452040 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Homology
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|553195226|ref|XP_005856105.1| (thioredoxin domain containing 9 [Nannochloropsis gaditana CCMP526] >gi|422292940|gb|EKU20241.1| thioredoxin domain containing 9 [Nannochloropsis gaditana CCMP526] >gi|585107728|gb|EWM25860.1| thioredoxin domain-containing protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 510.76 bits (1314), Expect = 0.000e+0
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 METEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGGLAPGRRGGTSSIRDGLTETQYDSDGSAEDDVF 244
            METEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGGLAPGRRGGTSSIRDGLTETQYDSDGSAEDDVF
Sbjct:    1 METEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGGLAPGRRGGTSSIRDGLTETQYDSDGSAEDDVF 244          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|673054103|ref|XP_008881012.1| (hypothetical protein H310_14849 [Aphanomyces invadans] >gi|574463273|gb|ETV90357.1| hypothetical protein H310_14849 [Aphanomyces invadans])

HSP 1 Score: 209.534 bits (532), Expect = 1.295e-64
Identity = 94/185 (50.81%), Postives = 129/185 (69.73%), Query Frame = 0
Query:    8 EVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPT 192
            +    Q+L+  Q +E +LD EI++LE ++EDD DKLR+RRL  +K A  QK  +K  GHG Y+EL++QQEFFD  K S  VV HFY  T  YC ++D H+  LA  H+ETRFC++NAEK+ YLV+KL ++M+P +  IK++   H ++GLDELGGTD FS+   AY LS+ NVL +DG  P+S T
Sbjct:   11 DAVGNQVLESLQAQEERLDAEIKQLERIEEDDMDKLRERRLRAMKAAAMQKQAWKNAGHGTYSELSNQQEFFDVIKESECVVLHFYNATNAYCPIMDKHLTTLAESHLETRFCRMNAEKADYLVQKLGIWMIPCVALIKNKSVVHMLQGLDELGGTDAFSTHFLAYFLSTKNVLKFDGSPPESVT 195          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|1173942342|gb|OQR91362.1| (hypothetical protein ACHHYP_04760 [Achlya hypogyna])

HSP 1 Score: 207.994 bits (528), Expect = 5.228e-64
Identity = 97/202 (48.02%), Postives = 136/202 (67.33%), Query Frame = 0
Query:    1 METEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNS 202
            M  E   +  S ++L+  + +EA+LD +I+KLETL+EDD +KLR+RRL +LK A  Q   +K  GHG Y+EL++QQEFFD  K S  VV HFY  T  YC V+D H+  +A  H+ET+FC++NAEK+ YLV+KL ++M+P +  IK++   H ++GLDELGGTD+FS+   AY LS+  VL +DG  P+S       K V S
Sbjct:    1 MNQEALMQAVSGRVLETLEAQEAQLDAQIKKLETLEEDDLEKLRERRLAQLKAASSQTQKWKDAGHGTYSELSTQQEFFDVIKASECVVLHFYSATNAYCPVLDKHLKTIAEGHLETKFCRMNAEKADYLVQKLGIWMIPCVALIKNKSVVHMLEGLDELGGTDQFSTHFLAYFLSTKKVLKFDGPPPESVLDDGVAKAVPS 202          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|698795664|ref|XP_009830861.1| (hypothetical protein H257_07128 [Aphanomyces astaci] >gi|574114437|gb|ETV79925.1| hypothetical protein H257_07128 [Aphanomyces astaci])

HSP 1 Score: 206.068 bits (523), Expect = 2.790e-63
Identity = 95/195 (48.72%), Postives = 133/195 (68.21%), Query Frame = 0
Query:    1 METEVFQEV---ASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPT 192
            M ++V Q++      Q+L+    +E +LD EI++LE ++EDD DKLR+RRL  LK A  QK  +K  GHG Y+EL++QQEFFD  K S   V HFY  T  YC ++D H+  LA  H+E+RFC++NAEK+ YLV+KL ++M+P +  IK++   H ++GLDELGGTD FS+   AY LS+ NVL +DG  P+S T
Sbjct:    1 MNSQVQQQLLNAVGNQVLESLHAQEERLDAEIKQLERMEEDDLDKLRERRLRALKSAAAQKQAWKNAGHGSYSELSNQQEFFDVIKDSECAVVHFYNATNAYCPIMDKHLTALAESHLESRFCRMNAEKADYLVQKLGIWMIPCVALIKNKSVVHMLQGLDELGGTDNFSTHFLAYFLSTKNVLKFDGTPPESVT 195          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|813186799|ref|XP_012207412.1| (hypothetical protein SPRG_12355 [Saprolegnia parasitica CBS 223.65] >gi|641527576|gb|KDO21855.1| hypothetical protein SPRG_12355 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 202.216 bits (513), Expect = 9.054e-62
Identity = 89/183 (48.63%), Postives = 132/183 (72.13%), Query Frame = 0
Query:   10 ASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPT 192
             S+++L+  + +EA+LD +I++LET++EDD D+LR+RRL+++K A  Q   +K  GHGEY EL++QQEFFD  K S  V+ HFY  T  +C ++D H+  LA  H+ET+FC++NAEK+ YLV+KL ++M+P +  IK++   H ++GLDELGGT EFS+   AY LS+  VL +DG  P+S T
Sbjct:   14 VSERVLETLEAQEARLDMQIKQLETMEEDDLDRLRERRLQQIKAAATQTQKWKDAGHGEYTELSTQQEFFDVIKASECVILHFYSATNAHCPLLDKHLRTLAESHLETKFCRMNAEKADYLVQKLGIWMIPCVALIKNKSVVHMLEGLDELGGTTEFSTHYLAYFLSTKKVLKFDGAPPESVT 196          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|669145756|ref|XP_008608440.1| (hypothetical protein SDRG_04543 [Saprolegnia diclina VS20] >gi|530739871|gb|EQC38113.1| hypothetical protein SDRG_04543 [Saprolegnia diclina VS20])

HSP 1 Score: 201.83 bits (512), Expect = 1.612e-61
Identity = 89/183 (48.63%), Postives = 131/183 (71.58%), Query Frame = 0
Query:   10 ASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPT 192
             S ++L+  + +EA+LD +I++LET++EDD D+LR+RRL+++K A  Q   +K  GHGEY EL++QQEFFD  K S  V+ HFY  T  +C ++D H+  LA  H+ET+FC++NAEK+ YLV+KL ++M+P +  IK++   H ++GLDELGGT EFS+   AY LS+  VL +DG  P+S T
Sbjct:   14 VSDRVLETLEAQEARLDMQIKQLETMEEDDLDRLRERRLQQIKAAATQMQKWKDAGHGEYTELSTQQEFFDVIKASECVILHFYSATNAHCPLLDKHLRALAESHLETKFCRMNAEKADYLVQKLGIWMIPCVALIKNKSVVHMLEGLDELGGTTEFSTHFLAYFLSTKKVLKFDGAPPESVT 196          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|564241869|ref|XP_006277745.1| (PREDICTED: thioredoxin domain-containing protein 9 [Alligator mississippiensis] >gi|1011604334|gb|KYO41432.1| thioredoxin domain-containing protein 9 [Alligator mississippiensis])

HSP 1 Score: 201.06 bits (510), Expect = 3.484e-61
Identity = 94/203 (46.31%), Postives = 137/203 (67.49%), Query Frame = 0
Query:    3 TEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRM 205
             E+FQ+V   Q+LQ  +  E +LD EIQKL+ +DEDD + ++QRRLE LKKA+QQK  +   GHGEY E+ S+++FF   K S  VVCHFYR T   C++VD H+A LA +H+ET+F K+NAEKSP+L E+L++ ++PT+  +KD KT   I G  +LG TD+F+++   + L   +++NY G   D P Q  KK G +  ++
Sbjct:    7 VEMFQKVLENQMLQTTKIVEEELDAEIQKLDQMDEDDLEHVKQRRLEALKKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESNNVVCHFYRDTTFRCKIVDKHLAILAKKHVETKFIKLNAEKSPFLCERLSIKVIPTLALVKDGKTQDFIVGFTDLGNTDDFTTETLEWRLGCSSIINYSGNLMDPPFQTQKKFGTSFTKL 209          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|677269425|gb|KFP60743.1| (Thioredoxin domain-containing protein 9, partial [Cariama cristata])

HSP 1 Score: 200.675 bits (509), Expect = 4.052e-61
Identity = 95/210 (45.24%), Postives = 138/210 (65.71%), Query Frame = 0
Query:    3 TEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGG 212
             E+ Q+V   +ILQ A+  E  LD EIQKL+ +DED+ + L+QRRLE LKKA+QQK  +   GHGEY E+ S+++FF   K S  VVCHFYR T   CQ++D H+  LA +HIET+F K+NAEKSP+L E+L + ++PT+  +KD KT  ++ G  +LG TD+F+++   + L   +++NY G   D P Q+ KK G +  ++  T   G
Sbjct:    8 VEILQKVLENEILQTAKVVEEHLDAEIQKLDQMDEDELECLKQRRLEALKKAQQQKQEWLSKGHGEYREIRSERDFFQEVKESKNVVCHFYRDTTFRCQIMDKHLTVLAKKHIETKFLKLNAEKSPFLCERLRIKVIPTLALVKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCADIINYSGNLMDPPFQSQKKFGTSFTKLDKTSIRG 217          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|698397045|ref|XP_009694744.1| (PREDICTED: thioredoxin domain-containing protein 9 [Cariama cristata])

HSP 1 Score: 200.675 bits (509), Expect = 4.378e-61
Identity = 95/210 (45.24%), Postives = 138/210 (65.71%), Query Frame = 0
Query:    3 TEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRMAMTGPGG 212
             E+ Q+V   +ILQ A+  E  LD EIQKL+ +DED+ + L+QRRLE LKKA+QQK  +   GHGEY E+ S+++FF   K S  VVCHFYR T   CQ++D H+  LA +HIET+F K+NAEKSP+L E+L + ++PT+  +KD KT  ++ G  +LG TD+F+++   + L   +++NY G   D P Q+ KK G +  ++  T   G
Sbjct:    7 VEILQKVLENEILQTAKVVEEHLDAEIQKLDQMDEDELECLKQRRLEALKKAQQQKQEWLSKGHGEYREIRSERDFFQEVKESKNVVCHFYRDTTFRCQIMDKHLTVLAKKHIETKFLKLNAEKSPFLCERLRIKVIPTLALVKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCADIINYSGNLMDPPFQSQKKFGTSFTKLDKTSIRG 216          
BLAST of EWM25860.1 vs. NCBI_GenBank
Match: gi|557287363|ref|XP_006026398.1| (PREDICTED: thioredoxin domain-containing protein 9 [Alligator sinensis])

HSP 1 Score: 199.904 bits (507), Expect = 7.379e-61
Identity = 94/203 (46.31%), Postives = 137/203 (67.49%), Query Frame = 0
Query:    3 TEVFQEVASQQILQLAQEEEAKLDREIQKLETLDEDDFDKLRQRRLEKLKKAEQQKHIYKQLGHGEYAELASQQEFFDAAKHSPRVVCHFYRPTAKYCQVVDFHMARLAARHIETRFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTHHIKGLDELGGTDEFSSDMFAYVLSSHNVLNYDGGRPDSPTQAAKKKGVNSIRM 205
             E+FQ+V   Q+LQ  +  E +LD EIQKL+ +DEDD + ++QRRLE LKKA+QQK  +   GHGEY E+ S+++FF   K S  VVCHFYR T   C++VD H+A LA +H+ET+F K+NAEKSP+L E+L++ ++PT+  +KD KT   I G  +LG TD+F+++   + L   +++NY G   D P Q  KK G +  ++
Sbjct:    7 VEMFQKVLENQMLQTTKIVEEELDAEIQKLDQMDEDDLEHVKQRRLEALKKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESNYVVCHFYRDTTFRCKIVDKHLAILAKKHVETKFIKLNAEKSPFLCERLSIKVIPTLALVKDGKTQDFIVGFTDLGNTDDFTTETLEWRLGCSSIINYSGNLMDPPFQTQKKFGTSFTKL 209          
The following BLAST results are available for this feature:
BLAST of EWM25860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553195226|ref|XP_005856105.1|0.000e+0100.00thioredoxin domain containing 9 [Nannochloropsis g... [more]
gi|673054103|ref|XP_008881012.1|1.295e-6450.81hypothetical protein H310_14849 [Aphanomyces invad... [more]
gi|1173942342|gb|OQR91362.1|5.228e-6448.02hypothetical protein ACHHYP_04760 [Achlya hypogyna... [more]
gi|698795664|ref|XP_009830861.1|2.790e-6348.72hypothetical protein H257_07128 [Aphanomyces astac... [more]
gi|813186799|ref|XP_012207412.1|9.054e-6248.63hypothetical protein SPRG_12355 [Saprolegnia paras... [more]
gi|669145756|ref|XP_008608440.1|1.612e-6148.63hypothetical protein SDRG_04543 [Saprolegnia dicli... [more]
gi|564241869|ref|XP_006277745.1|3.484e-6146.31PREDICTED: thioredoxin domain-containing protein 9... [more]
gi|677269425|gb|KFP60743.1|4.052e-6145.24Thioredoxin domain-containing protein 9, partial [... [more]
gi|698397045|ref|XP_009694744.1|4.378e-6145.24PREDICTED: thioredoxin domain-containing protein 9... [more]
gi|557287363|ref|XP_006026398.1|7.379e-6146.31PREDICTED: thioredoxin domain-containing protein 9... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4824rna4824Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications