EWM25883.1, cds4803 (CDS) Nannochloropsis gaditana

Overview
NameEWM25883.1
Unique Namecds4803
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:435356..436084 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25883.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g26.5575.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:435356..436084 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|585107751|gb|EWM25883.1| (hypothetical protein Naga_100054g26 [Nannochloropsis gaditana])

HSP 1 Score: 498.819 bits (1283), Expect = 1.264e-178
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MDTQRIDTASDHAQKTLSGGDGAASAKQPSVVRHDGPLVCIDRGQSALPEQGYDFLMETLGCDLGSELLGSSKEEYGARWLREVRLRFQERRYEKTWETFLENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEEGCIILLLWAGGHCFIDGACLPQGYEKGGCCTESVKD 242
            MDTQRIDTASDHAQKTLSGGDGAASAKQPSVVRHDGPLVCIDRGQSALPEQGYDFLMETLGCDLGSELLGSSKEEYGARWLREVRLRFQERRYEKTWETFLENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEEGCIILLLWAGGHCFIDGACLPQGYEKGGCCTESVKD
Sbjct:    1 MDTQRIDTASDHAQKTLSGGDGAASAKQPSVVRHDGPLVCIDRGQSALPEQGYDFLMETLGCDLGSELLGSSKEEYGARWLREVRLRFQERRYEKTWETFLENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEEGCIILLLWAGGHCFIDGACLPQGYEKGGCCTESVKD 242          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|1210520770|dbj|GAX20333.1| (hypothetical protein FisN_9Hh042 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 1.033e-9
Identity = 45/138 (32.61%), Postives = 70/138 (50.72%), Query Frame = 0
Query:   87 RFQERRYEKTWETF-LENGGKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLA-EEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEE-GCIILLLWAGGHCFI 221
            R ++++ E + E   L   GK   R   W ++       F LH HP  E+++ L G L+E RM G P + + + +G     +    ++ L  P  F  G  Q+ T  VNE+GS+H+S+T    GC +L+LW G H  I
Sbjct:   57 RTRDKKNETSDELIELLTTGKSNQRQLQWTLMDCAPGCQFRLHAHPNIELVYCLEGALHEIRMEGLPFTTSFDSDGSGEGVLIGPSVTQLQRPWTF--GTLQQGTWLVNEVGSIHKSFTASNCGCKLLVLWGGSHANI 192          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|219110835|ref|XP_002177169.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411704|gb|EEC51632.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.4698 bits (158), Expect = 4.105e-9
Identity = 41/120 (34.17%), Postives = 60/120 (50.00%), Query Frame = 0
Query:  106 KCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPL--SLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGE--EGCIILLLWAGGHCFI 221
            K  GR   W+++       F+LH HP  E+ +  +G L+E RM G P+  +  +   K  +   P  L+ L  P  F           VNE+GS+H+S+T    EGCI+L+LW G H  I
Sbjct:  119 KSNGRQLQWSVMDCAPGCQFNLHAHPNLELAYCAKGALHEIRMKGDPITKTFKKHPNKKCQLKGPT-LTDLDRPWYF--STLSAGEWLVNEVGSIHKSFTATSGEGCILLVLWGGSHANI 235          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|551539754|ref|XP_005758325.1| (hypothetical protein EMIHUDRAFT_219581 [Emiliania huxleyi CCMP1516] >gi|485605929|gb|EOD05896.1| hypothetical protein EMIHUDRAFT_219581 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.4698 bits (158), Expect = 5.894e-9
Identity = 42/106 (39.62%), Postives = 54/106 (50.94%), Query Frame = 0
Query:  114 WAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEEGCIILLLWAGGHC 219
            W++L +   RSF +H HP  EV  VLRG LYE R+L  P          V + + V  SG   P  F        +   N   SVHQS+T +EG +IL+LWAG H 
Sbjct:  157 WSLLLIEPHRSFPVHQHPDIEVEFVLRGALYENRLLSQP--------DAVLDASEVPDSGF--PRLFSVHTHGGGSFFSNPRFSVHQSYTMDEGVVILVLWAGRHV 252          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|1210513993|dbj|GAX26775.1| (hypothetical protein FisN_9Lh042 [Fistulifera solaris])

HSP 1 Score: 65.0846 bits (157), Expect = 6.053e-9
Identity = 41/119 (34.45%), Postives = 62/119 (52.10%), Query Frame = 0
Query:  105 GKCGGRCTYWAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLA-EEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEE-GCIILLLWAGGHCFI 221
            GK   R   WA++       F LH HP  E+++ + G L+E RM G P + + + +G     +    ++ L  P  F  G  Q+ T  VNE+GS+H+S+T    GC +L+LW G H  I
Sbjct:   88 GKSNQRPLQWALMDCMPGCQFRLHAHPNIELVYCMEGALHEIRMDGLPFTKSFDSDGAGEGILIGPSVTQLQRPWKF--GTLQKGTWLVNEVGSIHKSFTASNCGCKLLVLWGGSHANI 204          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|551570401|ref|XP_005771126.1| (hypothetical protein EMIHUDRAFT_118301 [Emiliania huxleyi CCMP1516] >gi|485622325|gb|EOD18697.1| hypothetical protein EMIHUDRAFT_118301 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.855 bits (159), Expect = 8.489e-9
Identity = 42/105 (40.00%), Postives = 54/105 (51.43%), Query Frame = 0
Query:  114 WAILQVPSDRSFDLHVHPCFEVLHVLRGRLYERRMLGPPLSLAEEEGKPVREMAPVDLSGLCPPPDFRDGVFQEDTINVNEMGSVHQSWTGEEGCIILLLWAGGH 218
            W++L +   RSF +H HP  EV  VLRG LYE R+L  P          V + + V  SG   P  F        +   N   SVHQS+T +EG +IL+LWAG H
Sbjct:  157 WSLLLIEPHRSFPVHQHPDIEVEFVLRGALYENRLLSQP--------DAVLDASEVPDSGF--PRLFSVHTHGGGSFFSNPRFSVHQSYTMDEGVVILVLWAGRH 251          
BLAST of EWM25883.1 vs. NCBI_GenBank
Match: gi|1072229292|gb|OEU14027.1| (TPP_enzyme_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.929 bits (154), Expect = 3.581e-8
Identity = 41/122 (33.61%), Postives = 62/122 (50.82%), Query Frame = 0
Query:  120 PSDRSFDLHVHPCFEVLHVLRGRLYERRMLG---PPLSLAEEEGKPV------REMAPVDLSGLCPPPD---FRDGVFQEDTINVNEMGSVHQSWTGEE-GCIILLLWAGGHCFIDGA-CLP 227
            P    FDLH HP  E+   + G+L+ERR++G    P +L + EG           + P  LS +    D   F D   +   +  N +GS+H+S+T  E GC++L LW+G H   D + C+P
Sbjct:  652 PKGFDFDLHGHPNIEICIPIVGKLHERRLIGAHIAPSALRQPEGDATFCDPRSSPLTPEHLSSIMDENDDLAFVDRSVKNGKVLFNPIGSIHKSYTRPEVGCLLLTLWSGIHSNFDKSDCIP 773          
The following BLAST results are available for this feature:
BLAST of EWM25883.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585107751|gb|EWM25883.1|1.264e-178100.00hypothetical protein Naga_100054g26 [Nannochlorops... [more]
gi|1210520770|dbj|GAX20333.1|1.033e-932.61hypothetical protein FisN_9Hh042 [Fistulifera sola... [more]
gi|219110835|ref|XP_002177169.1|4.105e-934.17predicted protein, partial [Phaeodactylum tricornu... [more]
gi|551539754|ref|XP_005758325.1|5.894e-939.62hypothetical protein EMIHUDRAFT_219581 [Emiliania ... [more]
gi|1210513993|dbj|GAX26775.1|6.053e-934.45hypothetical protein FisN_9Lh042 [Fistulifera sola... [more]
gi|551570401|ref|XP_005771126.1|8.489e-940.00hypothetical protein EMIHUDRAFT_118301 [Emiliania ... [more]
gi|1072229292|gb|OEU14027.1|3.581e-833.61TPP_enzyme_N-domain-containing protein [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4815rna4815Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications