EWM30185.1, cds480 (CDS) Nannochloropsis gaditana

Overview
NameEWM30185.1
Unique Namecds480
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1204664..1205530 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30185.1
ProductPex19 protein
Orig transcript idgnl|cribi|Naga_100090g14.8834.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1204664..1205530 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005777peroxisome
Vocabulary: INTERPRO
TermDefinition
IPR006708Pex19
Homology
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|585112843|gb|EWM30185.1| (Pex19 protein [Nannochloropsis gaditana])

HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MAETEDLDDILNDALDELDQEEEEEIHSAAHSTSQAPNSSVKSKAAVPVEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            MAETEDLDDILNDALDELDQEEEEEIHSAAHSTSQAPNSSVKSKAAVPVEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM
Sbjct:    1 MAETEDLDDILNDALDELDQEEEEEIHSAAHSTSQAPNSSVKSKAAVPVEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|1183316389|gb|ORX46263.1| (Pex19 protein [Hesseltinella vesiculosa])

HSP 1 Score: 113.235 bits (282), Expect = 6.455e-26
Identity = 92/306 (30.07%), Postives = 149/306 (48.69%), Query Frame = 0
Query:    3 ETEDLDDIL-NDA--------LDEL----DQEEE-----EEIHSAAHSTSQAPNSSVKSKAAVPVEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGG--DEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            E E LDD+L NDA        +DEL    DQ+ +     E++ S+   +    +S+V++  +VP       +S PK  S   +S    I    ++ KD  + +  +I            +EGE       DAF+++L+ + + L       A  GD E           +++ M+ QL++K+++Y P+K++  ++PAWLE+NK   E   YEK++ QYE+ +KIVA YE  D    DE +G+    ++D+MTQ QD GQPPA +++ +  G     F  P  GM  +           D E C +M
Sbjct:   55 EEESLDDMLDNDAFASQLQAGMDELFANMDQDPDMKAAFEKVWSSMDPSQLMMDSNVEAARSVP------PSSVPKPASATPASFQDTIAQTMNKLKDSSKEVESSI-----------NEEGE-------DAFMAELMKQMEGL-------AENGDFE----------NVLEGMMSQLMSKEMLYEPMKDLVGKYPAWLEANKASTEKDQYEKYQQQYEMCQKIVAAYEAPDFNEKDEAQGKK---IMDMMTQMQDLGQPPASLLEDMAPGMN---FDSPE-GMPDM----------KDLENCTIM 302          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|1178067750|gb|ORE22149.1| (Pex19 protein [Rhizopus microsporus])

HSP 1 Score: 107.457 bits (267), Expect = 6.703e-24
Identity = 68/240 (28.33%), Postives = 118/240 (49.17%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K+++  YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   84 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKIDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 280          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|727147250|emb|CEG70340.1| (hypothetical protein RMATCC62417_06257 [Rhizopus microsporus])

HSP 1 Score: 106.301 bits (264), Expect = 1.648e-23
Identity = 68/240 (28.33%), Postives = 117/240 (48.75%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K ++  YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   85 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPEWLEKNKDKTDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 281          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|729708179|emb|CEI95362.1| (hypothetical protein RMCBS344292_09551 [Rhizopus microsporus])

HSP 1 Score: 105.916 bits (263), Expect = 2.823e-23
Identity = 68/240 (28.33%), Postives = 117/240 (48.75%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K ++  YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   85 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKTDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 281          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|1178056236|gb|ORE11606.1| (Pex19 protein [Rhizopus microsporus var. microsporus])

HSP 1 Score: 105.145 bits (261), Expect = 3.021e-23
Identity = 68/240 (28.33%), Postives = 117/240 (48.75%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+   ++TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K +   YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   62 VWASFDNSNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 258          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|397611570|gb|EJK61386.1| (hypothetical protein THAOC_18139 [Thalassiosira oceanica])

HSP 1 Score: 107.842 bits (268), Expect = 3.247e-23
Identity = 71/217 (32.72%), Postives = 110/217 (50.69%), Query Frame = 0
Query:   52 TGAGTSTPKSTS----TVASSASTGIGTDED-------------EEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALG 251
             GAG +TP ++S     VA+S    +G D+              EE D+ E+I R ++ + K              D           ++F+K G    S   + D EK GG + + D  +D +++QLL+KDLMY P+KEV+ +FP WL  NK  + +  Y+K+  QY+ F++IV VY       E E  +   + +LM Q QDFGQPP +I+++L 
Sbjct:  161 VGAGDATPNNSSGVSDRVAASPPVCVGGDDGDISTKQNAPDSGGEEPDVDESINRLLDGINKASREPPTMPSSADIDP----------SQFEKFGEEMMSSIMK-DFEKFGGSKDSDDA-IDGVMKQLLSKDLMYEPMKEVSARFPKWLAENKEDLSEEDYQKYGTQYQFFQRIVHVY-------ETEPDNFPRIQELMQQIQDFGQPPVDIIRSLA 358          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|729700864|emb|CEJ02177.1| (hypothetical protein RMCBS344292_16190 [Rhizopus microsporus])

HSP 1 Score: 105.916 bits (263), Expect = 3.365e-23
Identity = 61/209 (29.19%), Postives = 110/209 (52.63%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGG 257
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K+++  YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G
Sbjct:   84 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKIDNKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG 263          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|727140693|emb|CEG76863.1| (hypothetical protein RMATCC62417_11697 [Rhizopus microsporus])

HSP 1 Score: 105.145 bits (261), Expect = 3.605e-23
Identity = 68/240 (28.33%), Postives = 116/240 (48.33%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K +   YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   63 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 259          
BLAST of EWM30185.1 vs. NCBI_GenBank
Match: gi|727140692|emb|CEG76862.1| (hypothetical protein RMATCC62417_11697 [Rhizopus microsporus])

HSP 1 Score: 104.76 bits (260), Expect = 6.003e-23
Identity = 68/240 (28.33%), Postives = 116/240 (48.33%), Query Frame = 0
Query:   49 VEATGAGTSTPKSTSTVASSASTGIGTDEDEEKDLKETIARTIEMLGKMGGGEGGKEGEGKEDTFDDAFLSKLVAEFDKLGAGFESGAGEGDGEKGGGKEGATDTMVDSMVRQLLTKDLMYPPLKEVTRQFPAWLESNKGKVEDGVYEKHRAQYELFEKIVAVYEGQDGGDEGEGRDMGVLLDLMTQAQDFGQPPAEIVQALGGGSGGGSFTDPAGGMAGLLHAALASEGGGDTEGCCVM 288
            V A+    +TP  T   A+S+S    +        +E I +T   + K+       +    ED+ +DAF+++L+ + + L                    G  + +++ M+ QL++K+L+Y P+K++ +++P WLE NK K +   YEK++ QY + + IVA YE  D  ++ E +   + +DLMT+ QD GQPPAE++  +  G   G   DP            A     D E C +M
Sbjct:   85 VWASFDNNNTPDKTREAATSSSKTPQS-------FQEAIGKT---MNKLKDSSKEIDSTIAEDS-EDAFMAELMKQMESLADN-----------------GEFENVLEGMMSQLMSKELLYEPMKDLAQKYPDWLEKNKDKTDSKEYEKYKEQYSICQNIVATYELPDFDEKNEAQAKKI-MDLMTKMQDLGQPPAELLDEMAPGMNFG---DPN-----------AVPDIKDLENCNIM 281          
The following BLAST results are available for this feature:
BLAST of EWM30185.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112843|gb|EWM30185.1|0.000e+0100.00Pex19 protein [Nannochloropsis gaditana][more]
gi|1183316389|gb|ORX46263.1|6.455e-2630.07Pex19 protein [Hesseltinella vesiculosa][more]
gi|1178067750|gb|ORE22149.1|6.703e-2428.33Pex19 protein [Rhizopus microsporus][more]
gi|727147250|emb|CEG70340.1|1.648e-2328.33hypothetical protein RMATCC62417_06257 [Rhizopus m... [more]
gi|729708179|emb|CEI95362.1|2.823e-2328.33hypothetical protein RMCBS344292_09551 [Rhizopus m... [more]
gi|1178056236|gb|ORE11606.1|3.021e-2328.33Pex19 protein [Rhizopus microsporus var. microspor... [more]
gi|397611570|gb|EJK61386.1|3.247e-2332.72hypothetical protein THAOC_18139 [Thalassiosira oc... [more]
gi|729700864|emb|CEJ02177.1|3.365e-2329.19hypothetical protein RMCBS344292_16190 [Rhizopus m... [more]
gi|727140693|emb|CEG76863.1|3.605e-2328.33hypothetical protein RMATCC62417_11697 [Rhizopus m... [more]
gi|727140692|emb|CEG76862.1|6.003e-2328.33hypothetical protein RMATCC62417_11697 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna480rna480Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications