EWM25858.1, cds4791 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|585107726|gb|EWM25858.1| (Nucleic acid-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query: 1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV 315
MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV
Sbjct: 1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV 315
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|553195184|ref|XP_005856095.1| (UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526] >gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 508.064 bits (1307), Expect = 7.257e-176 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query: 1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK 245
MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK
Sbjct: 1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK 245
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|298706050|emb|CBJ29160.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 94.7449 bits (234), Expect = 2.651e-18 Identity = 74/254 (29.13%), Postives = 124/254 (48.82%), Query Frame = 0
Query: 63 DQQGDGIASSTN-------ESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQA-------RVVKLLRTALLLDIGMPVPAFLPHNYIPDT------VPLESIRHLGALLRVRIKE 290
D G G S +N +P T+K + +S G+ +K + ++ L+ G ++ G V T FAAF+D VVR+G K+V LH D+ +P LE P V +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+ R KR +R++ + E + + + A V ++ + LL+D+ + L + I ++ V L + G L+ VRI++
Sbjct: 74 DDDGSGATSRSNVAATAAGSTPGNTGGATEKKQRNSGGAAAKAGRR--WIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIK-----------RPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR----QRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIED 310
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|298709770|emb|CBJ31572.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 68.1662 bits (165), Expect = 4.188e-9 Identity = 52/162 (32.10%), Postives = 78/162 (48.15%), Query Frame = 0
Query: 105 LQALRPGMRLHGGVVGVTEFAAFLDVKV-------VREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKV---KKLEGVEEGAEKQARVVKLLRTALLLDIG 256
L L+ G L G V VT+FAAF+ V R+G + + L DVPE L Q + + N+I G V V+VK+ FP +GRF VTLDP++ + R+ K + KK++K K+ + EG E +V++L +D+G
Sbjct: 175 LADLKHGEELTGVVKTVTQFAAFVQCGVGRPTRRKRRDGKPMVMEEVDGFLGKDDVPEDAAL----SAQLVKTQDQTNIISEGDRVKVFVKETFPGNGRFHVTLDPNVSAEDL---RRMKNEVQKKKSKFARRKETGDLVEGEEILGGIVRVLEFGFFVDVG 329 The following BLAST results are available for this feature:
BLAST of EWM25858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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