EWM25858.1, cds4791 (CDS) Nannochloropsis gaditana

Overview
NameEWM25858.1
Unique Namecds4791
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:410204..410487 -
Alignment locationCM002464.1:409896..410031 -
Alignment locationCM002464.1:409388..409702 -
Alignment locationCM002464.1:409101..409190 -
Alignment locationCM002464.1:408710..408832 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25858.1
ProductNucleic acid-binding protein
Orig transcript idgnl|cribi|Naga_100054g13.5550.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:410204..410487 -
CM002464.1supercontigCM002464.1:409896..410031 -
CM002464.1supercontigCM002464.1:409388..409702 -
CM002464.1supercontigCM002464.1:409101..409190 -
CM002464.1supercontigCM002464.1:408710..408832 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|585107726|gb|EWM25858.1| (Nucleic acid-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV 315
            MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV
Sbjct:    1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPSDCGSETKV 315          
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|553195184|ref|XP_005856095.1| (UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526] >gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 508.064 bits (1307), Expect = 7.257e-176
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK 245
            MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK
Sbjct:    1 MPHGRPCFLPSTMIGSVLMLLLASASSFFFKSPYPAATATSGACMARHPNGRSRAVLMPYANDQQGDGIASSTNESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVK 245          
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|298706050|emb|CBJ29160.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 94.7449 bits (234), Expect = 2.651e-18
Identity = 74/254 (29.13%), Postives = 124/254 (48.82%), Query Frame = 0
Query:   63 DQQGDGIASSTN-------ESPIRAAVVTDKAKADSEGSRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNV------IRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQA-------RVVKLLRTALLLDIGMPVPAFLPHNYIPDT------VPLESIRHLGALLRVRIKE 290
            D  G G  S +N        +P      T+K + +S G+ +K  +    ++ L+ G ++ G V   T FAAF+D  VVR+G   K+V     LH  D+            +P  LE  P V      +++GIH++ YVKDVFPN+GR +++LDP+I+K KV+  R  KR    +R++  + E + +   + A        V ++  + LL+D+     + L  + I ++      V L +    G L+ VRI++
Sbjct:   74 DDDGSGATSRSNVAATAAGSTPGNTGGATEKKQRNSGGAAAKAGRR--WIKELKTGDKVIGYVADTTNFAAFVDCSVVRQGSKNKIVPVTGFLHLTDIK-----------RPYALEGTPGVKDCEVEVKKGIHLTAYVKDVFPNAGRMTLSLDPNINKDKVLKLRDSKR----QRSRNSRRERLHKKGRRHAVGDIVEGYVREVHESMLLVDVMFAQLSVLRASNIRNSEEGQKFVNLSNKTKPGDLITVRIED 310          
BLAST of EWM25858.1 vs. NCBI_GenBank
Match: gi|298709770|emb|CBJ31572.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.1662 bits (165), Expect = 4.188e-9
Identity = 52/162 (32.10%), Postives = 78/162 (48.15%), Query Frame = 0
Query:  105 LQALRPGMRLHGGVVGVTEFAAFLDVKV-------VREGPGGKLVRCNAMLHPHDVPEGIKLLRDSHNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKV---KKLEGVEEGAEKQARVVKLLRTALLLDIG 256
            L  L+ G  L G V  VT+FAAF+   V        R+G    +   +  L   DVPE   L      Q +  +   N+I  G  V V+VK+ FP +GRF VTLDP++    +   R+ K  + KK++K    K+   + EG E    +V++L     +D+G
Sbjct:  175 LADLKHGEELTGVVKTVTQFAAFVQCGVGRPTRRKRRDGKPMVMEEVDGFLGKDDVPEDAAL----SAQLVKTQDQTNIISEGDRVKVFVKETFPGNGRFHVTLDPNVSAEDL---RRMKNEVQKKKSKFARRKETGDLVEGEEILGGIVRVLEFGFFVDVG 329          
The following BLAST results are available for this feature:
BLAST of EWM25858.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585107726|gb|EWM25858.1|0.000e+0100.00Nucleic acid-binding protein [Nannochloropsis gadi... [more]
gi|553195184|ref|XP_005856095.1|7.257e-176100.00UV excision repair protein RAD23, partial [Nannoch... [more]
gi|298706050|emb|CBJ29160.1|2.651e-1829.13expressed unknown protein [Ectocarpus siliculosus][more]
gi|298709770|emb|CBJ31572.1|4.188e-932.10conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4803rna4803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications