EWM25895.1, cds4768 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|585107764|gb|EWM25895.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana]) HSP 1 Score: 335.109 bits (858), Expect = 1.619e-116 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF Sbjct: 1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|698805414|ref|XP_009835736.1| (hypothetical protein H257_10779 [Aphanomyces astaci] >gi|574109145|gb|ETV74649.1| hypothetical protein H257_10779 [Aphanomyces astaci]) HSP 1 Score: 169.859 bits (429), Expect = 2.306e-51 Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 0 Query: 27 IIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 +IVPRNFKLLEEL+ AEKG D +IS GL+ +DIFL +W G+I GP GT+ +GR++ LKI CG+ YPN PP V F SR+N+ CVDQS G VNP L +L+ W R + +E+VL LR EM + ++RLPQ PEG+ F Sbjct: 9 VIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTSHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQSNGRVNPRSLGVLASWQRSYGIEQVLVALRNEMASTANKRLPQHPEGASF 145
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|673029178|ref|XP_008868550.1| (hypothetical protein H310_05583 [Aphanomyces invadans] >gi|574476167|gb|ETW03166.1| hypothetical protein H310_05583 [Aphanomyces invadans]) HSP 1 Score: 169.088 bits (427), Expect = 4.117e-51 Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 0 Query: 27 IIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 +IVPRNFKLLEEL+ AEKG D +IS GL+ +DIFL +W G+I GP GTT +GR++ LKI CG+ YPN PP V F SR+N+ CVDQ+ G VNP L +L+ W R + +E+VL LR EM + ++RLPQ PEGS F Sbjct: 9 VIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQTNGRVNPRGLGVLASWQRTYGIEQVLVALRNEMASATNKRLPQHPEGSSF 145
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|909139976|gb|KNE65143.1| (ubiquitin-conjugating enzyme spm2 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 166.392 bits (420), Expect = 3.827e-50 Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = 0 Query: 29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 VPRNF+LLEEL++ EKG D TIS GL N +DIF+ WNG+I GPP + E R++ L + C YP+ P V+F+S+VNLPCV STG V PSKL L+ W R++TME VL+E+RREM T G R+LPQPPEGS F Sbjct: 4 VPRNFRLLEELEKGEKGIGDGTISYGLANPDDIFMSDWNGTILGPPHSVHENRIYSLTLHCDQNYPDSAPIVKFISKVNLPCVHASTGRVEPSKLDCLARWSRNYTMETVLSEIRREMATSG-RKLPQPPEGSTF 137
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|669143400|ref|XP_008607262.1| (ubiquitin-conjugating enzyme E2 [Saprolegnia diclina VS20] >gi|813102924|ref|XP_012193971.1| hypothetical protein SPRG_00487 [Saprolegnia parasitica CBS 223.65] >gi|530740959|gb|EQC39201.1| ubiquitin-conjugating enzyme E2 [Saprolegnia diclina VS20] >gi|641541902|gb|KDO35647.1| hypothetical protein SPRG_00487 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 166.777 bits (421), Expect = 4.557e-50 Identity = 76/142 (53.52%), Postives = 104/142 (73.24%), Query Frame = 0 Query: 22 SQQDEIIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 S + +I+PRNFKLLEEL+ AEKG D +IS GL+ +DIFL +W G+I GP GT +GR++ LKI CG+ YPN+PP V F SR+N+ CVDQS G V+P ++ +L+ W+R+ +E+VL LR EM + ++RLPQ PEGS F Sbjct: 5 SGAEVVIIPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTCHDGRIYSLKIHCGEHYPNQPPDVYFTSRINMSCVDQSNGRVDPRRIGVLASWNRNSGIEQVLVSLRNEMASPANKRLPQHPEGSAF 146
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|552911461|gb|ERZ97133.1| (hypothetical protein GLOINDRAFT_39542 [Rhizophagus irregularis DAOM 181602] >gi|595438838|gb|EXX52413.1| E2 ubiquitin-conjugating protein MMS2 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 165.236 bits (417), Expect = 1.068e-49 Identity = 77/135 (57.04%), Postives = 96/135 (71.11%), Query Frame = 0 Query: 29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 VPRNFKLLEEL++ EKG D T S GL N EDIF+ WNG+I GPPGT E R++ LK+ C D YPN PP V F+SR+NLPCV+Q +G V S+L LS W ++E +L +LRREM +++LPQPPEGS F Sbjct: 4 VPRNFKLLEELEKGEKGIGDGTCSYGLSNGEDIFMSDWNGTIIGPPGTIHENRIYSLKLYCDDNYPNNPPIVHFISRINLPCVNQHSGKVESSRLSCLSQWKSSNSLEDILVDLRREMANAVNKKLPQPPEGSTF 138
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|909126936|gb|KNE54247.1| (hypothetical protein AMAG_00237 [Allomyces macrogynus ATCC 38327]) HSP 1 Score: 164.851 bits (416), Expect = 1.455e-49 Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 0 Query: 29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 +PRNF+LLEEL++ EKG D TIS GL N +DIF+ WNG+I GPP + E R++ L + C YP+ P V+F+S+VNLPCV STG V PSKL L+ W R++TME VL+E+RREM T G R+LPQPPEGS F Sbjct: 3 LPRNFRLLEELEKGEKGIGDGTISYGLANPDDIFMSDWNGTILGPPHSVHENRIYSLTLHCDQNYPDSAPIVKFISKVNLPCVHASTGRVEPSKLDCLARWSRNYTMETVLSEIRREMATSG-RKLPQPPEGSTF 136
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|403216383|emb|CCK70880.1| (hypothetical protein KNAG_0F02130 [Kazachstania naganishii CBS 8797]) HSP 1 Score: 163.696 bits (413), Expect = 4.475e-49 Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 0 Query: 29 VPRNFKLLEELDQAEKGQDP-TISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 VPR+F+LLEEL++ EKG P + S GL + +DI + WNG+I GPP + E R++ L+I CGDRYP+EPP V+F+S+VNLPCVDQ+TGVV+ K H L W R +TM+ VL +LR+EM T +++L QP EGS F Sbjct: 4 VPRSFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLEIVCGDRYPDEPPLVKFISKVNLPCVDQTTGVVSAEKFHTLRDWKRSYTMQTVLLDLRKEMGTPANKKLSQPSEGSVF 138
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|1173941094|gb|OQR90334.1| (DNA topoisomerase 2 DNA gyrase B [Achlya hypogyna]) HSP 1 Score: 164.081 bits (414), Expect = 4.726e-49 Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 0 Query: 22 SQQDEIIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162 S + +IVPRNFKLLEEL+ AEKG D +IS GL+ +DIFL W G+I GP GT +GR++ LKI CG+ YPN+PP + F SR+N+ CVDQ+ G V+P +L +L+ W+R+ +E+VL LR EM + ++RLPQ PEGS F Sbjct: 5 SGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLKIHCGENYPNQPPEIFFTSRINMTCVDQANGRVDPRRLGVLASWNRNSGIEQVLVSLRNEMASPANKRLPQHPEGSSF 146
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|727435129|ref|XP_010498835.1| (PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A [Camelina sativa]) HSP 1 Score: 164.081 bits (414), Expect = 6.872e-49 Identity = 70/142 (49.30%), Postives = 108/142 (76.06%), Query Frame = 0 Query: 20 SGSQQDEIIVPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGS 160 S +++ +++VPRNF+LLEEL++ EKG D T+S G+ + +DI++ +W G+I GPP TT+EG++F+LK+ CG YP PP VRF +R+N+ CV+ +GVV PS +L++W R +TME +L +L++EMMT +R+L QPPEG+ Sbjct: 2 SSAEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTTYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPESGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGN 143 The following BLAST results are available for this feature:
BLAST of EWM25895.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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