EWM25895.1, cds4768 (CDS) Nannochloropsis gaditana

Overview
NameEWM25895.1
Unique Namecds4768
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:333511..333999 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25895.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100048g18.10267.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:333511..333999 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|585107764|gb|EWM25895.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 335.109 bits (858), Expect = 1.619e-116
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF
Sbjct:    1 MWPGRAMSSPNRTAAAPPASGSQQDEIIVPRNFKLLEELDQAEKGQDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|698805414|ref|XP_009835736.1| (hypothetical protein H257_10779 [Aphanomyces astaci] >gi|574109145|gb|ETV74649.1| hypothetical protein H257_10779 [Aphanomyces astaci])

HSP 1 Score: 169.859 bits (429), Expect = 2.306e-51
Identity = 77/137 (56.20%), Postives = 100/137 (72.99%), Query Frame = 0
Query:   27 IIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            +IVPRNFKLLEEL+ AEKG  D +IS GL+  +DIFL +W G+I GP GT+ +GR++ LKI CG+ YPN PP V F SR+N+ CVDQS G VNP  L +L+ W R + +E+VL  LR EM +  ++RLPQ PEG+ F
Sbjct:    9 VIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTSHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQSNGRVNPRSLGVLASWQRSYGIEQVLVALRNEMASTANKRLPQHPEGASF 145          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|673029178|ref|XP_008868550.1| (hypothetical protein H310_05583 [Aphanomyces invadans] >gi|574476167|gb|ETW03166.1| hypothetical protein H310_05583 [Aphanomyces invadans])

HSP 1 Score: 169.088 bits (427), Expect = 4.117e-51
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 0
Query:   27 IIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            +IVPRNFKLLEEL+ AEKG  D +IS GL+  +DIFL +W G+I GP GTT +GR++ LKI CG+ YPN PP V F SR+N+ CVDQ+ G VNP  L +L+ W R + +E+VL  LR EM +  ++RLPQ PEGS F
Sbjct:    9 VIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQTNGRVNPRGLGVLASWQRTYGIEQVLVALRNEMASATNKRLPQHPEGSSF 145          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|909139976|gb|KNE65143.1| (ubiquitin-conjugating enzyme spm2 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 166.392 bits (420), Expect = 3.827e-50
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = 0
Query:   29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            VPRNF+LLEEL++ EKG  D TIS GL N +DIF+  WNG+I GPP +  E R++ L + C   YP+  P V+F+S+VNLPCV  STG V PSKL  L+ W R++TME VL+E+RREM T G R+LPQPPEGS F
Sbjct:    4 VPRNFRLLEELEKGEKGIGDGTISYGLANPDDIFMSDWNGTILGPPHSVHENRIYSLTLHCDQNYPDSAPIVKFISKVNLPCVHASTGRVEPSKLDCLARWSRNYTMETVLSEIRREMATSG-RKLPQPPEGSTF 137          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|669143400|ref|XP_008607262.1| (ubiquitin-conjugating enzyme E2 [Saprolegnia diclina VS20] >gi|813102924|ref|XP_012193971.1| hypothetical protein SPRG_00487 [Saprolegnia parasitica CBS 223.65] >gi|530740959|gb|EQC39201.1| ubiquitin-conjugating enzyme E2 [Saprolegnia diclina VS20] >gi|641541902|gb|KDO35647.1| hypothetical protein SPRG_00487 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 166.777 bits (421), Expect = 4.557e-50
Identity = 76/142 (53.52%), Postives = 104/142 (73.24%), Query Frame = 0
Query:   22 SQQDEIIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            S  + +I+PRNFKLLEEL+ AEKG  D +IS GL+  +DIFL +W G+I GP GT  +GR++ LKI CG+ YPN+PP V F SR+N+ CVDQS G V+P ++ +L+ W+R+  +E+VL  LR EM +  ++RLPQ PEGS F
Sbjct:    5 SGAEVVIIPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTCHDGRIYSLKIHCGEHYPNQPPDVYFTSRINMSCVDQSNGRVDPRRIGVLASWNRNSGIEQVLVSLRNEMASPANKRLPQHPEGSAF 146          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|552911461|gb|ERZ97133.1| (hypothetical protein GLOINDRAFT_39542 [Rhizophagus irregularis DAOM 181602] >gi|595438838|gb|EXX52413.1| E2 ubiquitin-conjugating protein MMS2 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 165.236 bits (417), Expect = 1.068e-49
Identity = 77/135 (57.04%), Postives = 96/135 (71.11%), Query Frame = 0
Query:   29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            VPRNFKLLEEL++ EKG  D T S GL N EDIF+  WNG+I GPPGT  E R++ LK+ C D YPN PP V F+SR+NLPCV+Q +G V  S+L  LS W    ++E +L +LRREM    +++LPQPPEGS F
Sbjct:    4 VPRNFKLLEELEKGEKGIGDGTCSYGLSNGEDIFMSDWNGTIIGPPGTIHENRIYSLKLYCDDNYPNNPPIVHFISRINLPCVNQHSGKVESSRLSCLSQWKSSNSLEDILVDLRREMANAVNKKLPQPPEGSTF 138          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|909126936|gb|KNE54247.1| (hypothetical protein AMAG_00237 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 164.851 bits (416), Expect = 1.455e-49
Identity = 78/135 (57.78%), Postives = 99/135 (73.33%), Query Frame = 0
Query:   29 VPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            +PRNF+LLEEL++ EKG  D TIS GL N +DIF+  WNG+I GPP +  E R++ L + C   YP+  P V+F+S+VNLPCV  STG V PSKL  L+ W R++TME VL+E+RREM T G R+LPQPPEGS F
Sbjct:    3 LPRNFRLLEELEKGEKGIGDGTISYGLANPDDIFMSDWNGTILGPPHSVHENRIYSLTLHCDQNYPDSAPIVKFISKVNLPCVHASTGRVEPSKLDCLARWSRNYTMETVLSEIRREMATSG-RKLPQPPEGSTF 136          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|403216383|emb|CCK70880.1| (hypothetical protein KNAG_0F02130 [Kazachstania naganishii CBS 8797])

HSP 1 Score: 163.696 bits (413), Expect = 4.475e-49
Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 0
Query:   29 VPRNFKLLEELDQAEKGQDP-TISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            VPR+F+LLEEL++ EKG  P + S GL + +DI +  WNG+I GPP +  E R++ L+I CGDRYP+EPP V+F+S+VNLPCVDQ+TGVV+  K H L  W R +TM+ VL +LR+EM T  +++L QP EGS F
Sbjct:    4 VPRSFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLEIVCGDRYPDEPPLVKFISKVNLPCVDQTTGVVSAEKFHTLRDWKRSYTMQTVLLDLRKEMGTPANKKLSQPSEGSVF 138          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|1173941094|gb|OQR90334.1| (DNA topoisomerase 2 DNA gyrase B [Achlya hypogyna])

HSP 1 Score: 164.081 bits (414), Expect = 4.726e-49
Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 0
Query:   22 SQQDEIIVPRNFKLLEELDQAEKGQ-DPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGSRF 162
            S  + +IVPRNFKLLEEL+ AEKG  D +IS GL+  +DIFL  W G+I GP GT  +GR++ LKI CG+ YPN+PP + F SR+N+ CVDQ+ G V+P +L +L+ W+R+  +E+VL  LR EM +  ++RLPQ PEGS F
Sbjct:    5 SGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLKIHCGENYPNQPPEIFFTSRINMTCVDQANGRVDPRRLGVLASWNRNSGIEQVLVSLRNEMASPANKRLPQHPEGSSF 146          
BLAST of EWM25895.1 vs. NCBI_GenBank
Match: gi|727435129|ref|XP_010498835.1| (PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A [Camelina sativa])

HSP 1 Score: 164.081 bits (414), Expect = 6.872e-49
Identity = 70/142 (49.30%), Postives = 108/142 (76.06%), Query Frame = 0
Query:   20 SGSQQDEIIVPRNFKLLEELDQAEKG-QDPTISLGLQNQEDIFLVAWNGSIFGPPGTTFEGRLFELKIECGDRYPNEPPFVRFVSRVNLPCVDQSTGVVNPSKLHILSHWDRHFTMERVLNELRREMMTQGSRRLPQPPEGS 160
            S +++ +++VPRNF+LLEEL++ EKG  D T+S G+ + +DI++ +W G+I GPP TT+EG++F+LK+ CG  YP  PP VRF +R+N+ CV+  +GVV PS   +L++W R +TME +L +L++EMMT  +R+L QPPEG+
Sbjct:    2 SSAEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTTYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPESGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEGN 143          
The following BLAST results are available for this feature:
BLAST of EWM25895.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107764|gb|EWM25895.1|1.619e-116100.00ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
gi|698805414|ref|XP_009835736.1|2.306e-5156.20hypothetical protein H257_10779 [Aphanomyces astac... [more]
gi|673029178|ref|XP_008868550.1|4.117e-5156.93hypothetical protein H310_05583 [Aphanomyces invad... [more]
gi|909139976|gb|KNE65143.1|3.827e-5058.52ubiquitin-conjugating enzyme spm2 [Allomyces macro... [more]
gi|669143400|ref|XP_008607262.1|4.557e-5053.52ubiquitin-conjugating enzyme E2 [Saprolegnia dicli... [more]
gi|552911461|gb|ERZ97133.1|1.068e-4957.04hypothetical protein GLOINDRAFT_39542 [Rhizophagus... [more]
gi|909126936|gb|KNE54247.1|1.455e-4957.78hypothetical protein AMAG_00237 [Allomyces macrogy... [more]
gi|403216383|emb|CCK70880.1|4.475e-4954.81hypothetical protein KNAG_0F02130 [Kazachstania na... [more]
gi|1173941094|gb|OQR90334.1|4.726e-4953.52DNA topoisomerase 2 DNA gyrase B [Achlya hypogyna][more]
gi|727435129|ref|XP_010498835.1|6.872e-4949.30PREDICTED: ubiquitin-conjugating enzyme E2 variant... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4780rna4780Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications