EWM25922.1, cds4745 (CDS) Nannochloropsis gaditana

Overview
NameEWM25922.1
Unique Namecds4745
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:263323..263876 +
Alignment locationCM002464.1:263980..264088 +
Alignment locationCM002464.1:264207..264823 +
Alignment locationCM002464.1:265044..265266 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25922.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100134g10.9881.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:263323..263876 +
CM002464.1supercontigCM002464.1:263980..264088 +
CM002464.1supercontigCM002464.1:264207..264823 +
CM002464.1supercontigCM002464.1:265044..265266 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|585107793|gb|EWM25922.1| (hypothetical protein Naga_100134g10 [Nannochloropsis gaditana])

HSP 1 Score: 1046.57 bits (2705), Expect = 0.000e+0
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 0
Query:    1 MLVCHKRRRHLKKLFDRFFIPQGNSAMKRSRESIMCASQEDPLVMRSTWSITLFRSVNCCVVLFAGFILAALSNIDNIRGSRSWYTTTLSDIRAPMVPVAPFLLTDRESFKSEELHFSWKVDNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLCPS 500
            MLVCHKRRRHLKKLFDRFFIPQGNSAMKRSRESIMCASQEDPLVMRSTWSITLFRSVNCCVVLFAGFILAALSNIDNIRGSRSWYTTTLSDIRAPMVPVAPFLLTDRESFKSEELHFSWKVDNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLCPS
Sbjct:    1 MLVCHKRRRHLKKLFDRFFIPQGNSAMKRSRESIMCASQEDPLVMRSTWSITLFRSVNCCVVLFAGFILAALSNIDNIRGSRSWYTTTLSDIRAPMVPVAPFLLTDRESFKSEELHFSWKVDNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLCPS 500          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|585107796|gb|EWM25925.1| (hypothetical protein Naga_100134g12 [Nannochloropsis gaditana])

HSP 1 Score: 877.47 bits (2266), Expect = 0.000e+0
Identity = 420/474 (88.61%), Postives = 438/474 (92.41%), Query Frame = 0
Query:   27 MKRSRESIMCASQEDPLVMRSTWSITLFRSVNCCVVLFAGFILAALSNIDNIRGSRSWYTTTLSDIRAPMVPVAPFLLTDRESFKSEELHFSWKVDNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLCPS 500
            M  SRES++C SQ+ P+ +RSTWS  L  S+ CC VL   FILAA S     R SR WY T +  I+ PMVPVAPFLLTDR+SF+SEELH+ WKV+NQ EIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQY+NLVNFLENGVWGGPDPQLENE QWKG+  FYQGTNARFNGRE CDCYREEPA+RRGNIENRYYHNEVLDVWVTFF WFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTS+RSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWV+DVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLE+LAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWD LHFYAPVY GLNKVLLNYLCPS
Sbjct:    1 MSSSRESVLCDSQQAPVEVRSTWSKGLLWSITCCAVLVIAFILAAFSETGRTRASR-WYGTIIFKIKPPMVPVAPFLLTDRKSFESEELHYLWKVENQREIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSMRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVYDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLEQLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDGLHFYAPVYEGLNKVLLNYLCPS 473          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|553178354|ref|XP_005852543.1| (hypothetical protein NGA_0704500, partial [Nannochloropsis gaditana CCMP526] >gi|422295989|gb|EKU23288.1| hypothetical protein NGA_0704500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 317.005 bits (811), Expect = 5.323e-104
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0
Query:  176 IVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLL 338
            ++   ++  RYQY+NLVNFLENGVWGGPDPQLENE QWKG+  FYQGTNARFNGRE CDCYREEPA+RRGNIENRYYHNEVLDVWVTFF WFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLL
Sbjct:    3 LIPFNETFVRYQYLNLVNFLENGVWGGPDPQLENEFQWKGWLPFYQGTNARFNGREICDCYREEPAERRGNIENRYYHNEVLDVWVTFFQWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLL 165          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|552817289|ref|XP_005844900.1| (hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis] >gi|307104545|gb|EFN52798.1| hypothetical protein CHLNCDRAFT_138448 [Chlorella variabilis])

HSP 1 Score: 117.472 bits (293), Expect = 3.501e-25
Identity = 106/368 (28.80%), Postives = 141/368 (38.32%), Query Frame = 0
Query:  151 LVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGP------DPQLENECQWKGYQRFYQGTNARFNGRETCDCYREE--------PADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYD--LERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQR----QGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYLC 498
            L + G  M+ +     A  CL  K +V VGDSLTRYQY+ L+ FLE G W  P       P + NE  W     F +GT+A F GRE CDCYR E        P ++    ENR++        V+ F +        GH                 P   GQTP                                                   C P  C+Q   W  D+      VV  L P  ++ NSG WG      D     +A + + +V    GRV+++TTT  R   P AP  D      +    +G  +LDA AIT P+  + N+ +        WD  H+ A VY  LN  LLN +C
Sbjct:  105 LSIRGCTMKRY-SHAEAKQCLAGKRLVFVGDSLTRYQYLALIYFLEKGEWPAPLGGVPGQPSVTNEHDW---NDFLRGTSALFGGRELCDCYRREYILGVTPRPPEKE-KFENRFFITADGATAVSHFTYTTAPHTVHGH-------------FGFPPHLMGQTP---------------------------------------------------CAPATCNQTADWAFDL--ALRRVVRPLQPTHVIINSGMWGSSNAFGDDKWRSIAAAGLYSVFEQLGRVIWRTTTAAR--GPRAPTRDHDALALKHTAAEGWGVLDAYAITRPLVKMLNKPM--------WDPRHYQAVVYRELNLYLLNMIC 391          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|1210530122|dbj|GAX11230.1| (hypothetical protein FisN_34Hu050 [Fistulifera solaris])

HSP 1 Score: 92.4337 bits (228), Expect = 7.443e-17
Identity = 97/389 (24.94%), Postives = 152/389 (39.07%), Query Frame = 0
Query:  122 DNQLEIAATTEANGARNVTGPGAGVAACTLVVDGYDMQSFEDRTAA-----LSCLRNKSIVMVGDSLTRYQYVNLVNFL-ENGVWGGPD--PQLENE-CQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWR--NLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDLERLA--QSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLNKVLLNYL 497
            D  L  A   E         P A       + D  D  SF + T       L   RN +I+ +GDSLTRYQY++LV FL  NG W  P+  P +  E     G+ +FY  T +     E CDC+RE   +    IENRYYH+ V +  VT+                               +++G+ P    W    +++E R  Q                                    E     Q+  WV  +     ++ P   P + +FN+G W      +DL+ +A  Q  ++A++  N   ++KTTT P+ +          D ++RQ  ++ D          +D +  +      +WD LHF+ P+Y+ LN  LL+ +
Sbjct:   34 DGGLPSAFIVEQAHINRQPSPFAEAFPSVNITDSLD--SFSNLTELVQLQNLPVPRNLNILFMGDSLTRYQYLDLVYFLSHNGTWPSPNDRPNMVMEKTHRNGWTQFYSFTKSALQPYEQCDCFRE--FNLTTLIENRYYHDPVRNNRVTYL------------------------------QKFGKLPFKSNWNVTEVHQEHRLVQS---------------------------------AAELNFLIQDADWVDAIRDFVCHLSP--KPSLFIFNAGLWRD----HDLKDVALQQKIVQALQACNIPSMFKTTTKPKTS-----AQPTWDEYERQLCNLTD--------YCMDVRWTALVPESYYWDWLHFHEPIYSMLNVQLLSMI 336          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|929750758|ref|XP_014150362.1| (hypothetical protein SARC_11039 [Sphaeroforma arctica JP610] >gi|906943083|gb|KNC76460.1| hypothetical protein SARC_11039 [Sphaeroforma arctica JP610])

HSP 1 Score: 87.0409 bits (214), Expect = 8.604e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 0
Query:  150 TLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLENECQ-------WK---GYQRFYQGTNARFNGRETCDCYREEPADRRGNI-ENRYYHNEVLDVWVTFFL 265
            +LVVDG D + F  R  AL  L  K ++MVGDS  RYQY+++  +LENG W  PD   E + +       W+   G+++F+  TN+  NG E CDC+RE+       I ENRY H E  +V VT+ +
Sbjct:   91 SLVVDGCDWRKFT-RKGALQILSGKHLIMVGDSRVRYQYLSMAFWLENGYW-PPDTYGEGDIKSPAKEGLWRDIGGWKQFFSDTNSYLNGEEECDCFREDKWPIENIIFENRYLHMEKYNVKVTYLM 215          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|553192159|ref|XP_005855524.1| (hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526] >gi|422293536|gb|EKU20836.1| hypothetical protein NGA_0609100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 73.559 bits (179), Expect = 1.299e-11
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 0
Query:  182 SLTRYQYVNLVNFLENGVWGGPDPQLENECQWKGYQR-------FYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWF--NPACGH 273
            +L+RYQY++L+ +LE G W   +   E    +KG  R       FY+ ++A F  RE CDCYREE   +  ++ENRYY NE  D+ V+F  WF  +P  GH
Sbjct:    2 TLSRYQYLSLIRYLEEGAW---EATQEKTLTFKGASRLKETWNDFYRRSSAFFGVREVCDCYREE--GKAPHVENRYYVNEEKDLRVSFIGWFGNHPPRGH 97          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|1210522211|dbj|GAX18973.1| (hypothetical protein FisN_8Hh194 [Fistulifera solaris])

HSP 1 Score: 71.2478 bits (173), Expect = 7.166e-10
Identity = 77/326 (23.62%), Postives = 132/326 (40.49%), Query Frame = 0
Query:  172 RNKSIVMVGDSLTRYQYVNLVNFL-ENGVWGGPDPQ----LENECQWKGYQRFYQGTNARFNGRETCDCYREEPADRRGNIENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDRAPKRYGQTPDVDEWRNLYREGRHFQEKTSVRSDASAMPLTSTLHLLEEKEASSIPSRQRGCEPGACDQEPHWVHDVYGLFTNVVPLLNPDVLVFNSGHWGRLPGAYDL--ERLAQSAIEAVRVSNGRVVYKTTTWPRINDPFAPEDDLKDFFQRQGISILDAGAITYPVAALDNQLVSTQSTHLFWDRLHFYAPVYAGLN 490
            RN +I+ +GDSL+RYQY++LV FL  NG W  PD      LEN  +  G+ +F+  TNA     E CDC+R   A +   +ENRY+++                   + +++T+L             +++G  P    W             T V ++   + L S L  +                     ++  W   +      + P   P V +FN+G W      +DL    + Q  ++A++      +YKTTT  ++ D     +   D +++Q   + D          +D +  +      +WD  HF  P+Y+ +N
Sbjct:   89 RNLNILFMGDSLSRYQYLDLVYFLSHNGTWPSPDETPNMVLENTHK-HGWVQFFNFTNAALRPYEQCDCFRLHSAIKA--VENRYFYD-----------------AERNNSVTYL-------------QKFGMYPFKSSW-----------NVTDVYNEHELVQLPSGLSFVH--------------------KDLDWADAIRDFVCRMSP--KPSVFIFNAGIW----ADHDLVNVEMQQRIVDALQECQIVSMYKTTT--KMTD---QRNQTWDEYEQQLCKLTD--------HCMDLRWTAIVPEEHYWDTKHFREPIYSMMN 331          
BLAST of EWM25922.1 vs. NCBI_GenBank
Match: gi|929755524|ref|XP_014152744.1| (hypothetical protein SARC_08736 [Sphaeroforma arctica JP610] >gi|906947695|gb|KNC78842.1| hypothetical protein SARC_08736 [Sphaeroforma arctica JP610])

HSP 1 Score: 71.633 bits (174), Expect = 7.826e-10
Identity = 51/153 (33.33%), Postives = 77/153 (50.33%), Query Frame = 0
Query:  150 TLVVDGYDMQSFEDRTAALSCLRNKSIVMVGDSLTRYQYVNLVNFLENGVWGGPDPQLE------NECQW---KGYQRFYQGTNARFNGRETCDCYREEPADRRGNI-ENRYYHNEVLDVWVTFFLWFNPACGHQGHNLTWLNVSVPPPRLDR 292
            +L+V   D Q +  R  A+  L+ K IV VGDS  RYQYV ++ +LENG W  PD + +       E  W    G++ F++ T     G E CDCYR +       I ENR+Y+NE  ++ +++F+ +       GH     +   PP + D 
Sbjct:   96 SLLVSECDWQKYT-RRGAIELLQGKHIVFVGDSRLRYQYVCMIFWLENGYW-PPDGEKDGFKSPVKESLWGGKGGWRAFFKDTAGYMKGNEYCDCYRNDHDMYVEPIYENRFYYNERYNLRLSYFVHYKTDMW-AGHKDIHGHYGFPPYQADE 245          
The following BLAST results are available for this feature:
BLAST of EWM25922.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585107793|gb|EWM25922.1|0.000e+0100.00hypothetical protein Naga_100134g10 [Nannochlorops... [more]
gi|585107796|gb|EWM25925.1|0.000e+088.61hypothetical protein Naga_100134g12 [Nannochlorops... [more]
gi|553178354|ref|XP_005852543.1|5.323e-10489.57hypothetical protein NGA_0704500, partial [Nannoch... [more]
gi|552817289|ref|XP_005844900.1|3.501e-2528.80hypothetical protein CHLNCDRAFT_138448 [Chlorella ... [more]
gi|1210530122|dbj|GAX11230.1|7.443e-1724.94hypothetical protein FisN_34Hu050 [Fistulifera sol... [more]
gi|929750758|ref|XP_014150362.1|8.604e-1540.94hypothetical protein SARC_11039 [Sphaeroforma arct... [more]
gi|553192159|ref|XP_005855524.1|1.299e-1141.58hypothetical protein NGA_0609100 [Nannochloropsis ... [more]
gi|1210522211|dbj|GAX18973.1|7.166e-1023.62hypothetical protein FisN_8Hh194 [Fistulifera sola... [more]
gi|929755524|ref|XP_014152744.1|7.826e-1033.33hypothetical protein SARC_08736 [Sphaeroforma arct... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4757rna4757Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications