EWM25921.1, cds4739 (CDS) Nannochloropsis gaditana

Overview
NameEWM25921.1
Unique Namecds4739
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:252882..252928 -
Alignment locationCM002464.1:252674..252764 -
Alignment locationCM002464.1:251885..252472 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25921.1
Productnuclear receptor 2c2-associated protein
Orig transcript idgnl|cribi|Naga_100134g4.9880.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:252882..252928 -
CM002464.1supercontigCM002464.1:252674..252764 -
CM002464.1supercontigCM002464.1:251885..252472 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
Homology
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|585107792|gb|EWM25921.1| (nuclear receptor 2c2-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 502.671 bits (1293), Expect = 3.198e-180
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0
Query:    1 MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT 241
            MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT
Sbjct:    1 MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT 241          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|553184918|ref|XP_005854168.1| (nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >gi|553185588|ref|XP_005854271.1| nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >gi|422294789|gb|EKU22089.1| nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526] >gi|422294891|gb|EKU22191.1| nuclear receptor 2c2-associated protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 500.36 bits (1287), Expect = 3.311e-179
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0
Query:    1 MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT 241
            MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTL MKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT
Sbjct:    1 MAFTDLSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLQMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWGLEEDQAT 241          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|957857880|ref|XP_014678117.1| (PREDICTED: nuclear receptor 2C2-associated protein-like [Priapulus caudatus])

HSP 1 Score: 99.3673 bits (246), Expect = 9.347e-23
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 0
Query:   14 KVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQV 80
            +V VSSVL+RNV+EFG   + DGS ++CWNSD+G PQW++LRFL PVL+ RL + FQGGFAG+E  +
Sbjct:   10 RVSVSSVLNRNVKEFGKQFLIDGSDETCWNSDEGLPQWVLLRFLHPVLIARLCVRFQGGFAGRECHL 76          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|1183340650|gb|ORX69603.1| (hypothetical protein DL89DRAFT_223864 [Linderina pennispora])

HSP 1 Score: 97.4413 bits (241), Expect = 4.982e-22
Identity = 64/222 (28.83%), Postives = 93/222 (41.89%), Query Frame = 0
Query:   13 TKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWG 234
            +K KVSSVL+R+ + FG AH+FD S ++CWNSDQG+PQ+I++ F +PV +  +L+ FQGGF GK++++                       A  AA  C                                      Y DD+NK QSF++          +E +V G  R                            +K+ FN S+DFYGR+ +Y L   G
Sbjct:    9 SKCKVSSVLNRDAKSFGKAHLFDASLETCWNSDQGSPQYILVEFAQPVKINSVLIQFQGGFVGKDIEL---------------------IDAIKAAKIC------------------------------------NLYADDNNKLQSFDV---------PQEEAVIGRSR----------------------------IKILFNQSTDFYGRIVIYSLDFVG 136          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|698817734|ref|XP_009841896.1| (hypothetical protein H257_15476 [Aphanomyces astaci] >gi|574103127|gb|ETV68671.1| hypothetical protein H257_15476 [Aphanomyces astaci])

HSP 1 Score: 93.5893 bits (231), Expect = 1.904e-20
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0
Query:    6 LSAPSTKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPAS 97
            L+  +T T  +VSSVL+R+ + +GA HMFDG+  +CWNSDQGTPQ ++L F R V + ++ +MFQGGF G+++Q  VT    P     LP S
Sbjct:    4 LTGAATPTTCRVSSVLNRDRKAYGAQHMFDGTDVTCWNSDQGTPQQVLLSFHRHVHIRQVHVMFQGGFVGEDVQFLVTTMESPTEFHALPVS 95          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|951569858|ref|XP_014483300.1| (PREDICTED: nuclear receptor 2C2-associated protein [Dinoponera quadriceps])

HSP 1 Score: 92.4337 bits (228), Expect = 3.580e-20
Identity = 60/223 (26.91%), Postives = 88/223 (39.46%), Query Frame = 0
Query:   11 TKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVW 233
             K + +VSSVL++NVR +G  HMFD S+++CWNSD GTPQW+++ F     +    + FQGGFAGKE  +                              C  ++T                           ++V  FYP+D N  Q F L   I+A                  RT                      +K  FN S+DF+GR+ +Y L+++
Sbjct:    8 NKFECRVSSVLNKNVRSYGKKHMFDDSNETCWNSDAGTPQWVIINFEEECSLSSFEIEFQGGFAGKECYLE---------------------------AGCNEKNT---------------------------VVVEAFYPEDVNNLQRFNLANKIKA------------------RT----------------------LKFVFNQSTDFFGRIIIYNLSLY 136          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|765551230|gb|KJE91851.1| (hypothetical protein CAOG_009598 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 93.5893 bits (231), Expect = 3.951e-20
Identity = 62/218 (28.44%), Postives = 97/218 (44.50%), Query Frame = 0
Query:   15 VKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAV 232
            V+VSSVL+R+ ++FG   M DG  D+CWNSDQG  Q + +   +PV +  + +MFQGGF G   ++ V       S A   A++ ++PS +++          P  +          D+ST      +  ++ T YP+D+N  Q F        ++QE                                   V  M+  F  S+DF+GRVT+YRL +
Sbjct:   14 VRVSSVLNRDAKQFGKQFMLDGRDDTCWNSDQGKSQTVSIELDQPVTIAGVRIMFQGGFVGNRCRIEV-----ERSPAQQEAAAGVSPSGESSLASSASASEQPGLA---------NDASTGSTTARKYDVLCTIYPEDNNTLQEFPF-----PSSQE-----------------------------------VQRMRFVFEASTDFFGRVTVYRLEL 177          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|1183426781|gb|ORY51082.1| (galactose-binding like protein [Rhizoclosmatium globosum])

HSP 1 Score: 91.2781 bits (225), Expect = 1.569e-19
Identity = 66/225 (29.33%), Postives = 92/225 (40.89%), Query Frame = 0
Query:   10 STKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVWG 234
            ST+ KVKVSS L+++ + FG  ++ DGS ++CWNSDQGT QWI++   +P  +  L LMFQGGF   E+QV   F  P      LP+SS                                          S  + VG+ YP+D NK Q+  L                                   GE G     K   +K+ F+   D YGR+ LY++ + G
Sbjct:    7 STEFKVKVSSTLNKDSKSFGKQYLTDGSDETCWNSDQGTSQWIIIELPQPSSISHLHLMFQGGFTSSEVQV---FAAP---TGTLPSSS------------------------------------------SEWIDVGSVYPEDSNKEQALAL-----------------------------------GEAGVG--IKAQSVKIVFSKPGDTYGRIVLYKVDLVG 146          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|759034221|ref|XP_011332601.1| (PREDICTED: nuclear receptor 2C2-associated protein [Ooceraea biroi] >gi|607368444|gb|EZA62557.1| Nuclear receptor 2C2-associated protein [Ooceraea biroi])

HSP 1 Score: 90.5077 bits (223), Expect = 1.894e-19
Identity = 58/223 (26.01%), Postives = 83/223 (37.22%), Query Frame = 0
Query:   11 TKTKVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKEMQVRVTFHTPPLSRAPLPASSPIAPSADAAATPCEHEHTSPPPSKPRTSVVNGKDSSTTLPMKSRPMLVGTFYPDDDNKSQSFELTAAIRAAAQEREASVRGAERDEDIRTYHHDRGPEEGEEGFDCMCKVVEMKLTFNGSSDFYGRVTLYRLAVW 233
             K + +VSSVL++N+R +G  HMFD S+++CWNSD GTPQWIV+ F     V    + FQGGF GK+  +                                                 G D   T        +V  F P+D N  Q F+L   I+A +                                         K  FN S+DF+GR+ +Y L+++
Sbjct:    8 NKFECRVSSVLNKNIRSYGKNHMFDDSAETCWNSDAGTPQWIVINFEEECTVSSFEIEFQGGFVGKDCHIEA-----------------------------------------------GNDEKNT-------TIVEAFNPEDRNNLQKFKLKDQIKAKS----------------------------------------FKFVFNQSTDFFGRIIIYNLSLY 136          
BLAST of EWM25921.1 vs. NCBI_GenBank
Match: gi|926607275|ref|XP_013794925.1| (PREDICTED: nuclear receptor 2C2-associated protein-like [Limulus polyphemus])

HSP 1 Score: 90.1225 bits (222), Expect = 3.132e-19
Identity = 36/64 (56.25%), Postives = 52/64 (81.25%), Query Frame = 0
Query:   14 KVKVSSVLHRNVREFGAAHMFDGSSDSCWNSDQGTPQWIVLRFLRPVLVCRLLLMFQGGFAGKE 77
            K++VSSVL+R+V++FG  ++ DG+ D+CWNSDQG+PQWI + F +PV + +L L FQGGF GK+
Sbjct:   11 KIRVSSVLNRDVKQFGKQYLTDGNDDTCWNSDQGSPQWISVIFSKPVKIEKLQLQFQGGFVGKD 74          
The following BLAST results are available for this feature:
BLAST of EWM25921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107792|gb|EWM25921.1|3.198e-180100.00nuclear receptor 2c2-associated protein [Nannochlo... [more]
gi|553184918|ref|XP_005854168.1|3.311e-17999.59nuclear receptor 2c2-associated protein [Nannochlo... [more]
gi|957857880|ref|XP_014678117.1|9.347e-2361.19PREDICTED: nuclear receptor 2C2-associated protein... [more]
gi|1183340650|gb|ORX69603.1|4.982e-2228.83hypothetical protein DL89DRAFT_223864 [Linderina p... [more]
gi|698817734|ref|XP_009841896.1|1.904e-2047.83hypothetical protein H257_15476 [Aphanomyces astac... [more]
gi|951569858|ref|XP_014483300.1|3.580e-2026.91PREDICTED: nuclear receptor 2C2-associated protein... [more]
gi|765551230|gb|KJE91851.1|3.951e-2028.44hypothetical protein CAOG_009598 [Capsaspora owcza... [more]
gi|1183426781|gb|ORY51082.1|1.569e-1929.33galactose-binding like protein [Rhizoclosmatium gl... [more]
gi|759034221|ref|XP_011332601.1|1.894e-1926.01PREDICTED: nuclear receptor 2C2-associated protein... [more]
gi|926607275|ref|XP_013794925.1|3.132e-1956.25PREDICTED: nuclear receptor 2C2-associated protein... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4751rna4751Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications