EWM25946.1, cds4728 (CDS) Nannochloropsis gaditana

Overview
NameEWM25946.1
Unique Namecds4728
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:226543..226791 +
Alignment locationCM002464.1:227143..227562 +
Alignment locationCM002464.1:227681..227899 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25946.1
ProductAlpha/beta hydrolase fold-1
Orig transcript idgnl|cribi|Naga_100721g1.2303.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:226543..226791 +
CM002464.1supercontigCM002464.1:227143..227562 +
CM002464.1supercontigCM002464.1:227681..227899 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR000073AB_hydrolase_1
Homology
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|585107821|gb|EWM25946.1| (Alpha/beta hydrolase fold-1 [Nannochloropsis gaditana])

HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYMLR 295
            MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYMLR
Sbjct:    1 MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYMLR 295          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|553194813|ref|XP_005856033.1| (hypothetical protein NGA_0515200 [Nannochloropsis gaditana CCMP526] >gi|422293025|gb|EKU20326.1| hypothetical protein NGA_0515200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 325.865 bits (834), Expect = 1.749e-108
Identity = 197/281 (70.11%), Postives = 201/281 (71.53%), Query Frame = 0
Query:    1 MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSS----------------------PSSTSSS-----------------------HPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFP 236
            MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQ           P+RP       G   +P                        P STS S                       HPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQ   +    +   P
Sbjct:    1 MFARMRGADWLPLCFFLIGPVLRTQAFSSPCLPCRDPTFPSSPSLPSFSSFCTVFSPPHAFVRPTASSSIQPYHPRHQRPTLQVLSSSSS--STPNRPYDEGFSHGFEDVPQRFLDEIEEIACRDMLQAMRSWDLPVSTSISPTGYVRATGVAPLPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQTVREAAQRLGRAP 279          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|298708653|emb|CBJ26140.1| (Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily [Ectocarpus siliculosus])

HSP 1 Score: 210.69 bits (535), Expect = 2.615e-62
Identity = 109/187 (58.29%), Postives = 133/187 (71.12%), Query Frame = 0
Query:  110 LPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPY-LDAYAVDMMGWGFSQLRG--VQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            + +  S+      P+L+LHGFDSS LE+RRL P L     +AYAVD++GWGF+ L    ++ F AEAKR +L AFW   +  RPMVLVGASLGGA A+DFAH +PEAVKKLVLIDAQ +IDG GP AS P PLA LGI VL SK LRS A  +SY D  L +T DA+ +GRLHT  DGW +AS++YM
Sbjct:   22 VQTDESTGKQGEDPILMLHGFDSSLLEFRRLLPKLGELGAEAYAVDVLGWGFTDLASGEIKSFGAEAKRTHLKAFWQQAMGGRPMVLVGASLGGAIALDFAHEFPEAVKKLVLIDAQGFIDGSGPGASLPGPLAKLGISVLGSKPLRSLANQMSYTDKSL-ATEDAVRVGRLHTMCDGWADASLQYM 207          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|308807701|ref|XP_003081161.1| (Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) (ISS) [Ostreococcus tauri] >gi|116059623|emb|CAL55330.1| Alpha/beta hydrolase fold-1 [Ostreococcus tauri] >gi|1199293885|gb|OUS48967.1| Alpha/Beta hydrolase protein [Ostreococcus tauri])

HSP 1 Score: 201.06 bits (510), Expect = 6.546e-59
Identity = 99/178 (55.62%), Postives = 132/178 (74.16%), Query Frame = 0
Query:  118 SSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLR--GVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
             SS PP +LLHGFDSSCLEYRRL P L+   + +A+D++GWGF+     GV D+S EAKR +L+AFW   +K RPMVL GASLGGAAA+DFA  +PEAV+KLVLIDAQ +I+G+GPM + P P+A +G+ VL++  LRS A  L+Y+D   Y+T DA+ +GRLHT    W +A++ +M
Sbjct:   92 GSSAPPFVLLHGFDSSCLEYRRLLPKLATRAETWAIDLLGWGFTDAGDGGVGDYSPEAKRAHLYAFWKENVK-RPMVLCGASLGGAAAIDFATNHPEAVEKLVLIDAQGFIEGLGPMGALPRPIAKVGVNVLRTVPLRSAANQLAYYDKATYATDDALRVGRLHTFAPQWCDATLSFM 268          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|145350265|ref|XP_001419533.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144579765|gb|ABO97826.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 196.823 bits (499), Expect = 3.053e-57
Identity = 94/178 (52.81%), Postives = 131/178 (73.60%), Query Frame = 0
Query:  118 SSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFS--QLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
             S   P +LLHGFDSSCLEYRRL P L+   + +AVD++GWGF+  Q  G+ D+S EAKR +L+AFW   +  RPMVL GASLGGAAA+DFA  +PEAV+KLVLIDAQ +I+G+GPM + P P+A +G+ +L++ ALR+ A  ++Y+D   ++T DA+ +GRLHT    W +A++ +M
Sbjct:   92 GSDAAPFVLLHGFDSSCLEYRRLFPKLAAKAETWAVDLLGWGFTDAQDGGIGDYSPEAKRAHLYAFWKANVG-RPMVLCGASLGGAAAIDFATNHPEAVEKLVLIDAQGFIEGLGPMGALPRPVAKMGVNILRTTALRNAANQMAYYDKATFATDDALRVGRLHTFAPQWCDATLSFM 268          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|255088689|ref|XP_002506267.1| (predicted protein [Micromonas commoda] >gi|226521538|gb|ACO67525.1| predicted protein [Micromonas commoda])

HSP 1 Score: 191.43 bits (485), Expect = 3.811e-55
Identity = 89/173 (51.45%), Postives = 129/173 (74.57%), Query Frame = 0
Query:  123 PVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQL--RGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            P +L+HGFDSSCLEYRRL PLL+   +A+AVD++GWGF+     G+ D+S EAKR +L+AFW   +  RP+ LVGASLGGAA++DFA  +PE V++LVL+DAQ +I+G+GPM  FP P+A  G+ +L+S+ LR+ A  ++Y D   ++T DAM +G+LHT +  W +A++ +M
Sbjct:   96 PFVLIHGFDSSCLEYRRLFPLLTERAEAHAVDLLGWGFTDAGDAGIGDYSPEAKRAHLYAFWKQEIG-RPITLVGASLGGAASIDFATAHPECVERLVLVDAQGFIEGLGPMGMFPRPIALAGVNILKSRPLRNTANQMAYCDRGTFATEDAMRVGQLHTFQPQWADATLSFM 267          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|926781624|ref|XP_013899286.1| (40S ribosomal protein S3-3 [Monoraphidium neglectum] >gi|761969215|gb|KIZ00267.1| 40S ribosomal protein S3-3 [Monoraphidium neglectum])

HSP 1 Score: 187.193 bits (474), Expect = 1.066e-52
Identity = 97/183 (53.01%), Postives = 128/183 (69.95%), Query Frame = 0
Query:  113 SPSST--SSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            +PS T  +S  PPV+LLHGFDSS LE RRLHPLL   ++A+AVD+                  KRE+L +FW   +  RPMVLVGASLGGA A++FA  YPEAV+K+VLIDAQ +IDG+GPM++ P PLAA G+ VL+++ LR  A  ++YHD   ++T DAM +GRLHTH DGW +A++ +M
Sbjct:   26 APSGTYANSDAPPVVLLHGFDSSSLEMRRLHPLLEQEVEAWAVDL------------------KREHLFSFWQEKIG-RPMVLVGASLGGAIALEFALEYPEAVEKIVLIDAQGFIDGIGPMSTMPRPLAAAGVWVLRTEQLRMAANRMAYHDQA-FATEDAMRVGRLHTHLDGWSDANIAFM 188          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|159478949|ref|XP_001697563.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158274442|gb|EDP00225.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 183.726 bits (465), Expect = 1.889e-52
Identity = 100/209 (47.85%), Postives = 133/209 (63.64%), Query Frame = 0
Query:  104 PQGLPPLPSSPS----------STSSSHPP----VLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLRGVQD-----FSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            P  +P +P  P+          S  +S+PP    V+LLHGFDSSC+E+RRL+P L+     YA+D++GWGF+     +         E K  +L AF       R +VLVGASLGGA A+DFA TYPE V+KLVLIDAQ +IDG+GPMA+ P PL  LG+++LQS  LR  A  ++Y D   Y+T DAM IGRLHTH  GW++A++ +M
Sbjct:   55 PITIPTMPGQPALETAFVGPTASELASYPPDVPAVVLLHGFDSSCMEFRRLYPKLAASAPTYALDLVGWGFTDYSLFKSEPGRVIRPEDKAAHLRAFLQAQCARRRVVLVGASLGGAMALDFAVTYPEVVEKLVLIDAQGFIDGIGPMATAPRPLLWLGVKLLQSVPLRQAANKMAYFDKGRYATEDAMRIGRLHTHLPGWEDANIAWM 263          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|303274637|ref|XP_003056635.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226460987|gb|EEH58280.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 191.815 bits (486), Expect = 2.514e-52
Identity = 110/274 (40.15%), Postives = 156/274 (56.93%), Query Frame = 0
Query:   26 AFSSPCLPCRDPTFPSSPSLPSFSSFCTVFS----PPHAFVRPTASSSIQPYHPRHQRPTLQPCGHGIFPFLPPSRPPATSAPQGLPPLPSSPSSTSSSHPPVLLLHGFDSSCLEYRRLHPLLSPYLDAYAVDMMGWGFSQLR--GVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFAHTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            A +  C+  RDPT     S PSF+     F        A   P A +  +      Q P     G G    +  +      AP+G              + P +LLHGFDSSCLEYRRL PLL    + +A+D++GWGF+     G+ D+S EAKR +LHAFW   +  RP+ LVGASLGGAAA+DFA  +PE V++LVL+DAQ +I+G+GPM   P P+A  G+ VL+++ LR+ A  ++Y D   ++T DAM +G+LHT +  W +A++ +M
Sbjct:  397 AVAQECV-ARDPT-----SRPSFAKIVDAFDAMLPEVTALEEPAAVAMAKRCR---QVPVADVAGRGARAIM--TSCVGAPAPEG-----------GEGNAPFVLLHGFDSSCLEYRRLFPLLERRAETWALDLLGWGFTDADDGGIGDYSPEAKRAHLHAFWKQEIG-RPITLVGASLGGAAAIDFATAHPECVERLVLVDAQGFIEGLGPMGLMPRPIALAGVNVLKTRILRNTANQMAYCDKATFATEDAMRVGQLHTFQPQWADATLSFM 647          
BLAST of EWM25946.1 vs. NCBI_GenBank
Match: gi|224012032|ref|XP_002294669.1| (hypothetical protein THAPSDRAFT_38512, partial [Thalassiosira pseudonana CCMP1335] >gi|220969689|gb|EED88029.1| hypothetical protein THAPSDRAFT_38512, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 179.874 bits (455), Expect = 6.759e-52
Identity = 88/173 (50.87%), Postives = 119/173 (68.79%), Query Frame = 0
Query:  123 PVLLLHGFDSSCLEYRRLHPLLSPY-LDAYAVDMMGWGFSQLRGVQDFSAEAKREYLHAFWVHVLKERPMVLVGASLGGAAAVDFA-HTYPEAVKKLVLIDAQVYIDGVGPMASFPPPLAALGIRVLQSKALRSYAGTLSYHDAPLYSTRDAMHIGRLHTHRDGWDEASVRYM 293
            P+LL+HGFDSS LEYRRL P L+   +D Y VD++GWG++QL  V  FSA+AK E L  FW  V     +V+ GASLGGAA ++FA   +   V+  VLIDAQ ++DG+GPM+  P PLA  GI+VLQS  LR+ A  +SYH+   Y+T DA+ +GRLH  R+GW++  + +M
Sbjct:    9 PLLLVHGFDSSALEYRRLGPQLAKLGVDVYCVDLLGWGYTQLDDVNSFSAKAKVEALKGFWKTVGSNGEVVVGGASLGGAATIEFAAENFEGFVRGTVLIDAQGFVDGIGPMSFLPAPLARAGIKVLQSVPLRNSANQMSYHNPETYATEDALKVGRLHCLREGWEDGMLSFM 181          
The following BLAST results are available for this feature:
BLAST of EWM25946.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107821|gb|EWM25946.1|0.000e+0100.00Alpha/beta hydrolase fold-1 [Nannochloropsis gadit... [more]
gi|553194813|ref|XP_005856033.1|1.749e-10870.11hypothetical protein NGA_0515200 [Nannochloropsis ... [more]
gi|298708653|emb|CBJ26140.1|2.615e-6258.29Predicted hydrolase/acyltransferase (alpha/beta hy... [more]
gi|308807701|ref|XP_003081161.1|6.546e-5955.62Predicted hydrolase/acyltransferase (alpha/beta hy... [more]
gi|145350265|ref|XP_001419533.1|3.053e-5752.81predicted protein [Ostreococcus lucimarinus CCE990... [more]
gi|255088689|ref|XP_002506267.1|3.811e-5551.45predicted protein [Micromonas commoda] >gi|2265215... [more]
gi|926781624|ref|XP_013899286.1|1.066e-5253.0140S ribosomal protein S3-3 [Monoraphidium neglectu... [more]
gi|159478949|ref|XP_001697563.1|1.889e-5247.85predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|303274637|ref|XP_003056635.1|2.514e-5240.15predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|224012032|ref|XP_002294669.1|6.759e-5250.87hypothetical protein THAPSDRAFT_38512, partial [Th... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4740rna4740Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications