EWM25959.1, cds4712 (CDS) Nannochloropsis gaditana

Overview
NameEWM25959.1
Unique Namecds4712
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:185873..185941 +
Alignment locationCM002464.1:186063..186154 +
Alignment locationCM002464.1:186290..186380 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25959.1
Productgdp-mannose -dehydratase
Orig transcript idgnl|cribi|Naga_100400g9.8596.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:185873..185941 +
CM002464.1supercontigCM002464.1:186063..186154 +
CM002464.1supercontigCM002464.1:186290..186380 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|585107843|gb|EWM25959.1| (gdp-mannose -dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 167.933 bits (424), Expect = 8.781e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS 83
            MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS
Sbjct:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS 83          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|1210527589|dbj|GAX13714.1| (GDPmannose 4,6-dehydratase [Fistulifera solaris])

HSP 1 Score: 114.39 bits (285), Expect = 1.056e-28
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    3 VEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALV 76
            V+W+GEKG+V+EVG + ADP  VLV+IDP+YFRPTEV+LLLGNPAKAK+ +GW     FD LVKEMVEAD+A++
Sbjct:  277 VQWQGEKGTVDEVGVDAADPSRVLVRIDPRYFRPTEVDLLLGNPAKAKERLGWSSSTPFDALVKEMVEADLAIL 350          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|950884241|ref|XP_014525236.1| (GDP-mannose dehydratase [Blastocystis sp. subtype 4] >gi|902859847|gb|KNB41793.1| GDP-mannose dehydratase [Blastocystis sp. subtype 4])

HSP 1 Score: 114.39 bits (285), Expect = 1.540e-28
Identity = 48/77 (62.34%), Postives = 68/77 (88.31%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVE 77
            +EVEW+GEKGSVNE+G +KA+PEHV+V+IDP+YFRP+EV+LL+G+ +KA+K +GWE +VSF +LV+EMV+ D+   E
Sbjct:  283 IEVEWRGEKGSVNEIGVDKANPEHVIVRIDPKYFRPSEVDLLIGDCSKAQKELGWEKKVSFQELVEEMVDCDLRSAE 359          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|1210530427|dbj|GAX11011.1| (GDPmannose 4,6-dehydratase [Fistulifera solaris])

HSP 1 Score: 113.62 bits (283), Expect = 2.203e-28
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    3 VEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALV 76
            V+W+GEKG+V+EVG + ADP  +LV+IDP+YFRPTEV+LLLGNPAKAK+ +GW     FD LVKEMVEAD+A++
Sbjct:  277 VQWQGEKGTVDEVGVDAADPSRILVRIDPRYFRPTEVDLLLGNPAKAKEKLGWSSSTPFDALVKEMVEADLAIL 350          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|551599846|ref|XP_005781713.1| (hypothetical protein EMIHUDRAFT_434640 [Emiliania huxleyi CCMP1516] >gi|485634509|gb|EOD29284.1| hypothetical protein EMIHUDRAFT_434640 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 108.612 bits (270), Expect = 1.233e-26
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS 83
            + +EW+GE   V+E+G + AD   VLV+IDP+YFRPTEVELL+G+PAKAK+ +GW P++   +L KEMV +DIALVEKGDLTS
Sbjct:  276 ITIEWQGE--GVDEIGVDAADKSRVLVRIDPKYFRPTEVELLIGDPAKAKEKLGWVPKIPMQELCKEMVASDIALVEKGDLTS 356          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|551577961|ref|XP_005774582.1| (hypothetical protein EMIHUDRAFT_310372 [Emiliania huxleyi CCMP1516] >gi|485626438|gb|EOD22153.1| hypothetical protein EMIHUDRAFT_310372 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 108.612 bits (270), Expect = 1.464e-26
Identity = 51/83 (61.45%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS 83
            + +EW+GE   V+E+G + AD   VLV+IDP+YFRPTEVELL+G+PAKAK+ +GW P++   +L KEMV  DIALVEKGDLTS
Sbjct:  272 ITIEWQGE--GVDEIGVDAADKSRVLVRIDPKYFRPTEVELLIGDPAKAKEKLGWVPKIPMQELCKEMVACDIALVEKGDLTS 352          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|397639781|gb|EJK73759.1| (hypothetical protein THAOC_04601 [Thalassiosira oceanica])

HSP 1 Score: 103.605 bits (257), Expect = 1.739e-25
Identity = 46/75 (61.33%), Postives = 64/75 (85.33%), Query Frame = 0
Query:    3 VEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVE 77
            ++WKGE G+V+E+G +  D   VLVKIDP+YFRPTEVELLLG+P+KAKK +GWE E+ F+ LVK+M++AD+A+V+
Sbjct:  162 IKWKGETGTVDEIGVDADDESRVLVKIDPRYFRPTEVELLLGDPSKAKKTLGWEAELGFEGLVKDMMKADLAMVK 236          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|855302723|ref|XP_012894519.1| (uncharacterized protein [Blastocystis hominis] >gi|300175160|emb|CBK20471.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 105.531 bits (262), Expect = 3.017e-25
Identity = 47/77 (61.04%), Postives = 64/77 (83.12%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVE 77
            +EVEW+GEK + NE+G +KA+PEHV+V+IDP+YFRPTEV+LL+G+  KAK  +GW+ EVSFD LV+EMV+ D+   E
Sbjct:  281 IEVEWRGEKDTPNEIGVDKANPEHVIVRIDPKYFRPTEVDLLIGDCTKAKTVLGWKKEVSFDQLVEEMVDCDMKSAE 357          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|224001660|ref|XP_002290502.1| (gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220973924|gb|EED92254.1| gdp-d-mannose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 103.99 bits (258), Expect = 8.372e-25
Identity = 45/74 (60.81%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    3 VEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALV 76
            + WKGE G+VNE G + AD   VLV+IDP+YFRPTEV+LLLG+P+KAKK +GWE  + F+ LVK+M+ AD+A+V
Sbjct:  276 IAWKGETGTVNEYGVDAADESRVLVRIDPRYFRPTEVDLLLGDPSKAKKTLGWEATLGFEGLVKDMMTADLAMV 349          
BLAST of EWM25959.1 vs. NCBI_GenBank
Match: gi|551578263|ref|XP_005774733.1| (hypothetical protein EMIHUDRAFT_207491 [Emiliania huxleyi CCMP1516] >gi|485626589|gb|EOD22304.1| hypothetical protein EMIHUDRAFT_207491 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 97.0561 bits (240), Expect = 1.689e-24
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0
Query:    1 MEVEWKGEKGSVNEVGYNKADPEHVLVKIDPQYFRPTEVELLLGNPAKAKKHIGWEPEVSFDDLVKEMVEADIALVEKGDLTS 83
            + +EW+GE+          AD   VLV+IDP+Y RPTEVELL+G+PAKAK+ +GW P++   +L KEMV +DIALVEKGDLTS
Sbjct:   26 ITIEWQGER----------ADKSRVLVRIDPKYVRPTEVELLIGDPAKAKEKLGWVPKIPMQELCKEMVASDIALVEKGDLTS 98          
The following BLAST results are available for this feature:
BLAST of EWM25959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107843|gb|EWM25959.1|8.781e-53100.00gdp-mannose -dehydratase [Nannochloropsis gaditana... [more]
gi|1210527589|dbj|GAX13714.1|1.056e-2867.57GDPmannose 4,6-dehydratase [Fistulifera solaris][more]
gi|950884241|ref|XP_014525236.1|1.540e-2862.34GDP-mannose dehydratase [Blastocystis sp. subtype ... [more]
gi|1210530427|dbj|GAX11011.1|2.203e-2866.22GDPmannose 4,6-dehydratase [Fistulifera solaris][more]
gi|551599846|ref|XP_005781713.1|1.233e-2661.45hypothetical protein EMIHUDRAFT_434640 [Emiliania ... [more]
gi|551577961|ref|XP_005774582.1|1.464e-2661.45hypothetical protein EMIHUDRAFT_310372 [Emiliania ... [more]
gi|397639781|gb|EJK73759.1|1.739e-2561.33hypothetical protein THAOC_04601 [Thalassiosira oc... [more]
gi|855302723|ref|XP_012894519.1|3.017e-2561.04uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|224001660|ref|XP_002290502.1|8.372e-2560.81gdp-d-mannose 4,6-dehydratase [Thalassiosira pseud... [more]
gi|551578263|ref|XP_005774733.1|1.689e-2456.63hypothetical protein EMIHUDRAFT_207491 [Emiliania ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4724rna4724Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications