EWM25965.1, cds4707 (CDS) Nannochloropsis gaditana

Overview
NameEWM25965.1
Unique Namecds4707
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:170708..170805 -
Alignment locationCM002464.1:170572..170605 -
Alignment locationCM002464.1:170420..170488 -
Alignment locationCM002464.1:170229..170286 -
Alignment locationCM002464.1:170038..170106 -

Link to JBrowse

Properties
Property NameValue
Start range170038
Start range.
Protein idEWM25965.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100562g3.5789.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:170708..170805 -
CM002464.1supercontigCM002464.1:170572..170605 -
CM002464.1supercontigCM002464.1:170420..170488 -
CM002464.1supercontigCM002464.1:170229..170286 -
CM002464.1supercontigCM002464.1:170038..170106 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM25965.1 vs. NCBI_GenBank
Match: gi|585107852|gb|EWM25965.1| (hypothetical protein Naga_100562g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 220.705 bits (561), Expect = 6.573e-73
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MGYFSKICLVAMATTLLSANFLATVQAFVLPSSRVNAASSLSTKMMGASTAEAGEKTTMTATDVKNGLMAKIMEDPNLKLPDQFQQALTDILDGMTEVAEETGEGGREG 109
            MGYFSKICLVAMATTLLSANFLATVQAFVLPSSRVNAASSLSTKMMGASTAEAGEKTTMTATDVKNGLMAKIMEDPNLKLPDQFQQALTDILDGMTEVAEETGEGGREG
Sbjct:    1 MGYFSKICLVAMATTLLSANFLATVQAFVLPSSRVNAASSLSTKMMGASTAEAGEKTTMTATDVKNGLMAKIMEDPNLKLPDQFQQALTDILDGMTEVAEETGEGGREG 109
The following BLAST results are available for this feature:
BLAST of EWM25965.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Position :
0
Zoom :
x 1
01SequenceEWM25965.1
Match NameE-valueIdentityDescription
gi|585107852|gb|EWM25965.1|6.573e-73100.00hypothetical protein Naga_100562g3, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4719rna4719Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications