EWM25969.1, cds4704 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|585107862|gb|EWM25969.1| (dna helicase [Nannochloropsis gaditana]) HSP 1 Score: 403.675 bits (1036), Expect = 1.530e-142 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT 194 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT Sbjct: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT 194
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|298708608|emb|CBJ26095.1| (DEAD box helicase [Ectocarpus siliculosus]) HSP 1 Score: 257.684 bits (657), Expect = 6.383e-76 Identity = 120/182 (65.93%), Postives = 143/182 (78.57%), Query Frame = 0 Query: 11 IFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192 IFGH FR GQE+V+ A+ +DVFVLMPTGGGKSLCYQLPAC PG+ VVFSPL+SL+QDQV +R GV+AA + S QDY++E R +MD+LY L +G LKLLYITPEKF RS +M K LQRL +GLL+RFVIDEAHC+S WGHDFRPDYL L +R FP +PIMALTATAN + +D Sbjct: 587 IFGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVAQMRATGVEAAYINSEQDYDSEVRVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDD 768
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|219111971|ref|XP_002177737.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410622|gb|EEC50551.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 236.113 bits (601), Expect = 2.037e-72 Identity = 107/186 (57.53%), Postives = 142/186 (76.34%), Query Frame = 0 Query: 8 NHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193 N R FGH+ FR GQ+K+++ A+ D+FVLMPTGGGKSLCYQLPA PG+ VV SPLLSLIQDQV+ L + G++A L S QDY+TE +I RL AHG +KLLYITPEK S + ++RL ++ L++RFV+DEAHC+S WGHDFRPDY+ L S+R ++P++P+MALTATAN++++ DA Sbjct: 5 NRRKFGHQEFRAGQQKIIKNAIQGCDIFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQALTQLGIEAVFLASTQDYQTEQMDITRRLNETTAHGGVKLLYITPEKLNNSTMIQNIIRRLCNKNLISRFVVDEAHCLSDWGHDFRPDYMRLDSVRREYPNVPLMALTATANEKVVNDA 190
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1072224690|gb|OEU09439.1| (ATP-dependent DNA helicase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 244.588 bits (623), Expect = 1.823e-71 Identity = 111/191 (58.12%), Postives = 144/191 (75.39%), Query Frame = 0 Query: 3 DASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193 D + N R+FGHR+FR GQ+ V+E A+ +DVFVLMPTGGGKSLCYQLPA PG+ VV SPLLSLIQDQV+ L + GV + +SHQDY+TE +I +L AHG +KLLY+TPEK S+ M L+RL ++GL++RFV+DEAHC+S WGHDFRPDY L +R +P +P+MALTATAN++++ DA Sbjct: 476 DMYEENQRVFGHRTFRKGQQLVIEKAIQGKDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSLTKYGVKSVFFSSHQDYQTEQVDINRQLNQTTAHGGVKLLYLTPEKLRHSNQMQSILRRLYNKGLISRFVVDEAHCLSDWGHDFRPDYNQLGVLRKDYPGVPLMALTATANKKVVNDA 666
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1210530566|dbj|GAX10791.1| (hypothetical protein FisN_1Hh332 [Fistulifera solaris]) HSP 1 Score: 241.506 bits (615), Expect = 9.571e-71 Identity = 112/193 (58.03%), Postives = 142/193 (73.58%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193 ++D N R FGHR FR GQ+ V+E A++ RDVFVLMPTGGGKSLCYQLPA PG+ VV SPLLSLIQDQV+ + + G+++ L S QDYE+E I R+ AHG +KLLY+TPEK + S M L+RL R L++RFV+DEAHC+S WGHDFRPDY L IR ++P +PIMALTATAN++++ DA Sbjct: 409 VKDMYAENRRKFGHREFRPGQKNVIENAIAGRDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSMTKLGIESVYLASSQDYESEQVAITRRINETTAHGGVKLLYLTPEKLSNSTHMQSMLRRLHSRNLISRFVVDEAHCLSDWGHDFRPDYNKLGMIRSQYPGVPIMALTATANEKVVNDA 601
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1210520118|dbj|GAX21001.1| (bloom syndrome protein [Fistulifera solaris]) HSP 1 Score: 241.121 bits (614), Expect = 2.545e-70 Identity = 111/186 (59.68%), Postives = 139/186 (74.73%), Query Frame = 0 Query: 8 NHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193 N R FGHR FR GQ+ V+E A++ RDVFVLMPTGGGKSLCYQLPA PG+ VV SPLLSLIQDQV+ + + G+++ L S QDYE+E I R+ AHG +KLLY+TPEK + S M L+RL R L++RFV+DEAHC+S WGHDFRPDY L IR ++P +PIMALTATAN++++ DA Sbjct: 416 NRRKFGHREFRPGQKNVIENAITGRDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSMTKLGIESVYLASSQDYESEQVAITRRINETTAHGGVKLLYLTPEKLSNSTHMQSMLRRLHSRNLISRFVVDEAHCLSDWGHDFRPDYNKLGMIRSQYPGVPIMALTATANEKVVNDA 601
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|953503151|emb|CEG35919.1| (bloom syndrome protein [Plasmopara halstedii]) HSP 1 Score: 229.95 bits (585), Expect = 2.893e-66 Identity = 113/192 (58.85%), Postives = 135/192 (70.31%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192 MQ A + +FGH SFR QE+ V A S RDVFVLMPTGGGKSLC+QLPAC+ G+T+V SPL+SLIQDQV+ L V A L QDY TE R I+ L+ H +K+LY+TPEK A S+ + + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KF S+PIMALTATAN + D Sbjct: 419 MQRAKRLLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTIVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIITELF--SNHSRIKMLYVTPEKIASSNMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRAKFSSVPIMALTATANTQTEAD 608
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567966997|gb|ETK92186.1| (hypothetical protein, variant 1 [Phytophthora parasitica]) HSP 1 Score: 228.794 bits (582), Expect = 6.253e-66 Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192 MQ A + +FGH SFR QE+ V A S RDVFVLMPTGGGKSLC+QLPAC+ G+TVV SPL+SLIQDQV+ L V A L QDY TE R I+ L+ +K+LY+TPEK A S + + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN + D Sbjct: 376 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 565
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567967000|gb|ETK92189.1| (hypothetical protein, variant 4 [Phytophthora parasitica]) HSP 1 Score: 228.024 bits (580), Expect = 6.574e-66 Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192 MQ A + +FGH SFR QE+ V A S RDVFVLMPTGGGKSLC+QLPAC+ G+TVV SPL+SLIQDQV+ L V A L QDY TE R I+ L+ +K+LY+TPEK A S + + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN + D Sbjct: 420 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 609
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567966996|gb|ETK92185.1| (hypothetical protein L915_04400 [Phytophthora parasitica]) HSP 1 Score: 228.794 bits (582), Expect = 6.660e-66 Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0 Query: 1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192 MQ A + +FGH SFR QE+ V A S RDVFVLMPTGGGKSLC+QLPAC+ G+TVV SPL+SLIQDQV+ L V A L QDY TE R I+ L+ +K+LY+TPEK A S + + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN + D Sbjct: 420 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 609 The following BLAST results are available for this feature:
BLAST of EWM25969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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