EWM25969.1, cds4704 (CDS) Nannochloropsis gaditana

Overview
NameEWM25969.1
Unique Namecds4704
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:158900..158917 +
Alignment locationCM002464.1:159035..159185 +
Alignment locationCM002464.1:159474..159574 +
Alignment locationCM002464.1:159811..159911 +
Alignment locationCM002464.1:160084..160174 +
Alignment locationCM002464.1:160403..160477 +
Alignment locationCM002464.1:160633..160674 +
Alignment locationCM002464.1:160864..160869 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25969.1
Productdna helicase
Orig transcript idgnl|cribi|Naga_101513g1.2276.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:158900..158917 +
CM002464.1supercontigCM002464.1:159035..159185 +
CM002464.1supercontigCM002464.1:159474..159574 +
CM002464.1supercontigCM002464.1:159811..159911 +
CM002464.1supercontigCM002464.1:160084..160174 +
CM002464.1supercontigCM002464.1:160403..160477 +
CM002464.1supercontigCM002464.1:160633..160674 +
CM002464.1supercontigCM002464.1:160864..160869 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0008026ATP-dependent helicase activity
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0006310DNA recombination
Vocabulary: INTERPRO
TermDefinition
IPR002464DNA/RNA_helicase_DEAH_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR004589DNA_helicase_ATP-dep_RecQ
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|585107862|gb|EWM25969.1| (dna helicase [Nannochloropsis gaditana])

HSP 1 Score: 403.675 bits (1036), Expect = 1.530e-142
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT 194
            MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT
Sbjct:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDAT 194          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|298708608|emb|CBJ26095.1| (DEAD box helicase [Ectocarpus siliculosus])

HSP 1 Score: 257.684 bits (657), Expect = 6.383e-76
Identity = 120/182 (65.93%), Postives = 143/182 (78.57%), Query Frame = 0
Query:   11 IFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192
            IFGH  FR GQE+V+  A+  +DVFVLMPTGGGKSLCYQLPAC  PG+ VVFSPL+SL+QDQV  +R  GV+AA + S QDY++E R +MD+LY L  +G LKLLYITPEKF RS +M K LQRL  +GLL+RFVIDEAHC+S WGHDFRPDYL L  +R  FP +PIMALTATAN  + +D
Sbjct:  587 IFGHAKFRTGQEEVIVDAMKGKDVFVLMPTGGGKSLCYQLPACCCPGLAVVFSPLISLVQDQVAQMRATGVEAAYINSEQDYDSEVRVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTVVRDD 768          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|219111971|ref|XP_002177737.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410622|gb|EEC50551.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 236.113 bits (601), Expect = 2.037e-72
Identity = 107/186 (57.53%), Postives = 142/186 (76.34%), Query Frame = 0
Query:    8 NHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193
            N R FGH+ FR GQ+K+++ A+   D+FVLMPTGGGKSLCYQLPA   PG+ VV SPLLSLIQDQV+ L + G++A  L S QDY+TE  +I  RL    AHG +KLLYITPEK   S  +   ++RL ++ L++RFV+DEAHC+S WGHDFRPDY+ L S+R ++P++P+MALTATAN++++ DA
Sbjct:    5 NRRKFGHQEFRAGQQKIIKNAIQGCDIFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQALTQLGIEAVFLASTQDYQTEQMDITRRLNETTAHGGVKLLYITPEKLNNSTMIQNIIRRLCNKNLISRFVVDEAHCLSDWGHDFRPDYMRLDSVRREYPNVPLMALTATANEKVVNDA 190          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1072224690|gb|OEU09439.1| (ATP-dependent DNA helicase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 244.588 bits (623), Expect = 1.823e-71
Identity = 111/191 (58.12%), Postives = 144/191 (75.39%), Query Frame = 0
Query:    3 DASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193
            D  + N R+FGHR+FR GQ+ V+E A+  +DVFVLMPTGGGKSLCYQLPA   PG+ VV SPLLSLIQDQV+ L + GV +   +SHQDY+TE  +I  +L    AHG +KLLY+TPEK   S+ M   L+RL ++GL++RFV+DEAHC+S WGHDFRPDY  L  +R  +P +P+MALTATAN++++ DA
Sbjct:  476 DMYEENQRVFGHRTFRKGQQLVIEKAIQGKDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSLTKYGVKSVFFSSHQDYQTEQVDINRQLNQTTAHGGVKLLYLTPEKLRHSNQMQSILRRLYNKGLISRFVVDEAHCLSDWGHDFRPDYNQLGVLRKDYPGVPLMALTATANKKVVNDA 666          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1210530566|dbj|GAX10791.1| (hypothetical protein FisN_1Hh332 [Fistulifera solaris])

HSP 1 Score: 241.506 bits (615), Expect = 9.571e-71
Identity = 112/193 (58.03%), Postives = 142/193 (73.58%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193
            ++D    N R FGHR FR GQ+ V+E A++ RDVFVLMPTGGGKSLCYQLPA   PG+ VV SPLLSLIQDQV+ + + G+++  L S QDYE+E   I  R+    AHG +KLLY+TPEK + S  M   L+RL  R L++RFV+DEAHC+S WGHDFRPDY  L  IR ++P +PIMALTATAN++++ DA
Sbjct:  409 VKDMYAENRRKFGHREFRPGQKNVIENAIAGRDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSMTKLGIESVYLASSQDYESEQVAITRRINETTAHGGVKLLYLTPEKLSNSTHMQSMLRRLHSRNLISRFVVDEAHCLSDWGHDFRPDYNKLGMIRSQYPGVPIMALTATANEKVVNDA 601          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|1210520118|dbj|GAX21001.1| (bloom syndrome protein [Fistulifera solaris])

HSP 1 Score: 241.121 bits (614), Expect = 2.545e-70
Identity = 111/186 (59.68%), Postives = 139/186 (74.73%), Query Frame = 0
Query:    8 NHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLEDA 193
            N R FGHR FR GQ+ V+E A++ RDVFVLMPTGGGKSLCYQLPA   PG+ VV SPLLSLIQDQV+ + + G+++  L S QDYE+E   I  R+    AHG +KLLY+TPEK + S  M   L+RL  R L++RFV+DEAHC+S WGHDFRPDY  L  IR ++P +PIMALTATAN++++ DA
Sbjct:  416 NRRKFGHREFRPGQKNVIENAITGRDVFVLMPTGGGKSLCYQLPAWCCPGLAVVISPLLSLIQDQVQSMTKLGIESVYLASSQDYESEQVAITRRINETTAHGGVKLLYLTPEKLSNSTHMQSMLRRLHSRNLISRFVVDEAHCLSDWGHDFRPDYNKLGMIRSQYPGVPIMALTATANEKVVNDA 601          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|953503151|emb|CEG35919.1| (bloom syndrome protein [Plasmopara halstedii])

HSP 1 Score: 229.95 bits (585), Expect = 2.893e-66
Identity = 113/192 (58.85%), Postives = 135/192 (70.31%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192
            MQ A +    +FGH SFR  QE+ V  A S RDVFVLMPTGGGKSLC+QLPAC+  G+T+V SPL+SLIQDQV+ L    V  A L   QDY TE R I+  L+    H  +K+LY+TPEK A S+ +    + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KF S+PIMALTATAN +   D
Sbjct:  419 MQRAKRLLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTIVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIITELF--SNHSRIKMLYVTPEKIASSNMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRAKFSSVPIMALTATANTQTEAD 608          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567966997|gb|ETK92186.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 228.794 bits (582), Expect = 6.253e-66
Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192
            MQ A +    +FGH SFR  QE+ V  A S RDVFVLMPTGGGKSLC+QLPAC+  G+TVV SPL+SLIQDQV+ L    V  A L   QDY TE R I+  L+       +K+LY+TPEK A S  +    + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN +   D
Sbjct:  376 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 565          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567967000|gb|ETK92189.1| (hypothetical protein, variant 4 [Phytophthora parasitica])

HSP 1 Score: 228.024 bits (580), Expect = 6.574e-66
Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192
            MQ A +    +FGH SFR  QE+ V  A S RDVFVLMPTGGGKSLC+QLPAC+  G+TVV SPL+SLIQDQV+ L    V  A L   QDY TE R I+  L+       +K+LY+TPEK A S  +    + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN +   D
Sbjct:  420 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 609          
BLAST of EWM25969.1 vs. NCBI_GenBank
Match: gi|567966996|gb|ETK92185.1| (hypothetical protein L915_04400 [Phytophthora parasitica])

HSP 1 Score: 228.794 bits (582), Expect = 6.660e-66
Identity = 114/192 (59.38%), Postives = 134/192 (69.79%), Query Frame = 0
Query:    1 MQDASQCNHRIFGHRSFRLGQEKVVEAALSLRDVFVLMPTGGGKSLCYQLPACLTPGITVVFSPLLSLIQDQVEGLRENGVDAAQLTSHQDYETEGREIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQRLLED 192
            MQ A +    +FGH SFR  QE+ V  A S RDVFVLMPTGGGKSLC+QLPAC+  G+TVV SPL+SLIQDQV+ L    V  A L   QDY TE R I+  L+       +K+LY+TPEK A S  +    + L+ RGLLARFVIDEAHCISQWGHDFR DYL L ++R KFPS+PIMALTATAN +   D
Sbjct:  420 MQRAKRVLRDVFGHNSFRPNQERTVMEAFSGRDVFVLMPTGGGKSLCFQLPACIDDGVTVVISPLVSLIQDQVQQLEALDVGVANLKGDQDYATEQRPIISELFSNQIR--IKMLYVTPEKIASSGMLNNLFESLEKRGLLARFVIDEAHCISQWGHDFRKDYLNLGTLRTKFPSVPIMALTATANSQTEAD 609          
The following BLAST results are available for this feature:
BLAST of EWM25969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107862|gb|EWM25969.1|1.530e-142100.00dna helicase [Nannochloropsis gaditana][more]
gi|298708608|emb|CBJ26095.1|6.383e-7665.93DEAD box helicase [Ectocarpus siliculosus][more]
gi|219111971|ref|XP_002177737.1|2.037e-7257.53predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1072224690|gb|OEU09439.1|1.823e-7158.12ATP-dependent DNA helicase [Fragilariopsis cylindr... [more]
gi|1210530566|dbj|GAX10791.1|9.571e-7158.03hypothetical protein FisN_1Hh332 [Fistulifera sola... [more]
gi|1210520118|dbj|GAX21001.1|2.545e-7059.68bloom syndrome protein [Fistulifera solaris][more]
gi|953503151|emb|CEG35919.1|2.893e-6658.85bloom syndrome protein [Plasmopara halstedii][more]
gi|567966997|gb|ETK92186.1|6.253e-6659.38hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567967000|gb|ETK92189.1|6.574e-6659.38hypothetical protein, variant 4 [Phytophthora para... [more]
gi|567966996|gb|ETK92185.1|6.660e-6659.38hypothetical protein L915_04400 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4716rna4716Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications