EWM30222.1, cds470 (CDS) Nannochloropsis gaditana

Overview
NameEWM30222.1
Unique Namecds470
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1176274..1176777 -
Alignment locationCM002455.1:1175925..1176122 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30222.1
Productcral trio domain containing protein
Orig transcript idgnl|cribi|Naga_100003g2.1739.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1176274..1176777 -
CM002455.1supercontigCM002455.1:1175925..1176122 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011074CRAL/TRIO_N_dom
IPR001251CRAL-TRIO_dom
Homology
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|585112881|gb|EWM30222.1| (cral trio domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 486.878 bits (1252), Expect = 2.880e-174
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0
Query:    1 MTVDLQNMTVPEDVMAELGAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFAHLAK 233
            MTVDLQNMTVPEDVMAELGAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFAHLAK
Sbjct:    1 MTVDLQNMTVPEDVMAELGAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFAHLAK 233          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|585109977|gb|EWM27704.1| (CRAL-TRIO domain protein [Nannochloropsis gaditana])

HSP 1 Score: 152.91 bits (385), Expect = 4.264e-41
Identity = 75/197 (38.07%), Postives = 121/197 (61.42%), Query Frame = 0
Query:   14 VMAELGAKI---AQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVH 207
            +  EL AKI   A    +  ++   +L+R+L+AR+L V +A+ +W    AWR+  +P+++ E   AP L+   VS+ G DK GR C+    RNH+      +  LR  + +LE +T  S +T+  G+I  I D +G G +N+DT L   KPG++ I++EYYPE L +  I++++W+FR+ W +I PF+DE+T+ KVH
Sbjct:  111 IFEELLAKITELAPEDNVPPYNDEDLLNRVLVARNLQVPEAFRMWMNIVAWRKHYQPQILSEEEAAPYLSKGVVSICGPDKQGRPCIYALNRNHIIDAENHDSNLRTIVNLLEKTTVESTRTAD-GFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVH 306          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|118360174|ref|XP_001013324.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|89295091|gb|EAR93079.1| divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 126.331 bits (316), Expect = 4.675e-31
Identity = 62/186 (33.33%), Postives = 104/186 (55.91%), Query Frame = 0
Query:   39 RMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDL 224
            R+L AR   V+ A+ +W+ W  WR D K + I E  VA +L        GMDK G  C++++ + H PG    + +LR  +++LE   S+  + +GTG ++ IWD +G   +N D+ L +    +  IM++ Y E L T+ I++ NW F+  + V+ PF+  RTK K+ ++     L ++F P +L
Sbjct:   59 RLLWAREFKVEKAFEMWKKWVDWRIDFKADEIKEEDVASELQSGKAFWHGMDKQGNPCLVVKVKYHRPGVSSQDVVLRYFLYLLEEGISK-CEQAGTGKVSVIWDREGFDKKNFDSNLFSTFKKLNQIMQDNYAERLSTIYILHPNWFFKTIYAVVKPFLTSRTKSKITIVDKTEELKKFFEPSEL 243          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|1134868678|gb|OMJ67334.1| (hypothetical protein SteCoe_35521 [Stentor coeruleus])

HSP 1 Score: 118.627 bits (296), Expect = 4.736e-29
Identity = 58/199 (29.15%), Postives = 105/199 (52.76%), Query Frame = 0
Query:   31 HSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFA 229
            +++  +L R+L AR L V  AY +W+ W  WR+D + + I E  +   +        G D  GR C+I+R R H P QF  E+ +R  I+++E    +      TG I  I+D       N D  L      +  +++++Y E L  + I++ NW++ + +  I P ++++T++K+H+L++   L E+FHP  L  ++ 
Sbjct:   31 YTNQDMLLRVLRARDLKVQAAYEMWQKWYKWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFSLEETMRYVIYLVEQGV-KLADERHTGQICVIYDRGDISSANKDGNLIELGKSLAAMLQDFYAERLGAVYILHVNWLYWLIFQAIKPLLNKKTRNKMHILRNAEGLKEHFHPSQLMVEYG 228          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|829171967|ref|XP_012653198.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|586737512|gb|EWS74225.1| divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 119.013 bits (297), Expect = 1.151e-28
Identity = 62/227 (27.31%), Postives = 112/227 (49.34%), Query Frame = 0
Query:   15 MAELGAKIAQ-----HPTLSH-----HSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELID--EASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFA 229
            +AE   KI +     HP +S      +SS     R + AR      ++ +WE W  W ++ +P+LI   E+++  QL+   +     D   R C+  R + HVP     E+ +R  +++LE      +K    G I  I+D +G   +  D         ++ I+++YYPE L    ++ +NW +R  + V+  F+ E+T  KV VL +++ LL++F+ Q+L  ++ 
Sbjct:   22 IAEFQKKIEKQINQTHPNISQELKELYSSVDTAIRFMNAREFSEQKSFEMWEKWIKWHQEYRPDLISDKESTIQKQLSTGKLFWHKFDNERRPCLYYRMKYHVPKLASVEESVRFFLFMLEQGIKEGIKLGSEGTICVIYDRRGYTKKQYDENAMKTMRALVPILQDYYPERLSMFYVLGANWFYRAAFKVVATFMSEKTSKKVKVLGEDSELLQFFNKQNLIKEYG 248          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|1134886566|gb|OMJ83991.1| (hypothetical protein SteCoe_14977 [Stentor coeruleus])

HSP 1 Score: 117.087 bits (292), Expect = 1.849e-28
Identity = 59/215 (27.44%), Postives = 111/215 (51.63%), Query Frame = 0
Query:   15 MAELGAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFA 229
            + EL   I +      +++  +L R+L AR L V  AY +W+ W  WR+D + + I E  +   +        G D  GR C+I+R R H P QF  E+ +R  I+++E    +      TG +  I+D       N D  L     G+  +++++Y E L  + I++ NW++ + +  + P ++++T++K+H+L++   L E+F+P  L  ++ 
Sbjct:   15 LCELTKLIHEITDEEKYTNQDMLIRVLRARDLKVQPAYEMWQKWYRWRKDYRADEITEEEMKEHIKTGKAFFFGEDNEGRPCLIVRARYHWPNQFALEETMRYVIYLVEQGV-KLADEKHTGQMCVIYDRGDISSANKDGNLIELGKGLAAMLQDFYAERLGAVYILHVNWLYWLIFQAVKPLLNKKTRNKIHILRNVEGLKEHFNPSQLLVEYG 228          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|145493659|ref|XP_001432825.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124399939|emb|CAK65428.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 114.39 bits (285), Expect = 2.517e-27
Identity = 52/192 (27.08%), Postives = 111/192 (57.81%), Query Frame = 0
Query:   28 LSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYF 219
            +  +S+   L R+L+AR   ++DA+  W+ W  WR+  + + I    +  ++ ++     G+DK G  C+I++ + H PG+   E ++R  +++++    ++   +GTG I+ IWD +G  F+N D+++ T    I+ ++++ Y E L  L I+  N++ +    ++ PF++E+TK K+ +L ++   L+Y+
Sbjct:   31 IQKYSNEDHLVRLLIAREWKINDAFEQWKRWVEWRKQYRADEIKIEEIQKEIDLRKAFWNGVDKLGNPCLIIKAKRHFPGESNPETLIRFFLYMIDQGIQQA-DMTGTGRISVIWDREGVAFKNFDSSMFTIMKKIVTLVQDNYAERLHQLFILYPNFLVKSVMNIVRPFLNEKTKSKI-ILCNQMKDLQYY 220          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|145473547|ref|XP_001462437.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|124430277|emb|CAK95064.1| unnamed protein product [Paramecium tetraurelia])

HSP 1 Score: 113.62 bits (283), Expect = 5.419e-27
Identity = 58/209 (27.75%), Postives = 109/209 (52.15%), Query Frame = 0
Query:   19 GAKIAQHPTLSHHSSPAVLSRMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSD 227
              K+ +   +  ++  A L R+L+A+   +D+A+  W  W  WR+  K + I    +  +L +      G DK G  C+I++ R H PGQ   + ++R  +++++    R+ +  GTG IT IWD +G   +N D+++      +I ++++ Y E L    I+  N++++   T++ PF+ ERTK K+ +  +   L  YF    + SD
Sbjct:   27 AQKLLRDDLIQKYTDQAHLLRLLIAKDWKLDEAWEQWNRWVEWRKQYKADDIKIEEIKKELDMNKTFWNGQDKLGNPCLIIKARRHFPGQSDPDTLIRYMLYMIDIGIERA-EQGGTGKITVIWDREGVTTKNFDSSMFKIIKRMITLVQDNYAERLHQAYILYPNFLYKTVMTIVKPFLSERTKQKIILCNEFKDLYPYFGENFIISD 234          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|118399667|ref|XP_001032158.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|89286496|gb|EAR84495.1| divergent CRAL/TRIO domain protein (macronuclear) [Tetrahymena thermophila SB210])

HSP 1 Score: 113.62 bits (283), Expect = 1.642e-26
Identity = 55/186 (29.57%), Postives = 101/186 (54.30%), Query Frame = 0
Query:   39 RMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTGMDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDL 224
            R+L A+  HV+ A+ +W+ W +WR     + I E  +A +         G DK    C++++ +NH+PG    + M++  ++++E +  +S + +GTG I+ IWD +G   +N+D  L      +  I+++ Y E +Q + I+  NW F+  + ++ PF+ ERTK KV  +     +  YF P +L
Sbjct:   65 RLLWAQDFHVEKAFAMWQKWISWRLKIGADDIKEEDIAQEYQRGRAFWHGKDKQNNPCLVVKVKNHIPG-VSSDIMVKYVLFLIEEAIQKS-EEAGTGMISIIWDREGFSIKNVDYKLFETFKSLNQIIQDNYAERIQKVYILYPNWFFKTIYALVKPFLTERTKQKVLFVDQIEDMTTYFEPSEL 248          
BLAST of EWM30222.1 vs. NCBI_GenBank
Match: gi|118400186|ref|XP_001032416.1| (divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210] >gi|89286757|gb|EAR84753.1| divergent CRAL/TRIO domain protein [Tetrahymena thermophila SB210])

HSP 1 Score: 111.694 bits (278), Expect = 4.965e-26
Identity = 56/192 (29.17%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   39 RMLLARHLHVDDAYVLWEGWAAWREDEKPELIDEASVAPQLAVQTVSVTG-MDKSGRTCVILRTRNHVPGQFPFEDMLRLTIWVLETSTSRSVKTSGTGYITAIWDCKGQGFRNLDTALATHKPGIIHIMKEYYPECLQTLLIVNSNWVFRVFWTVIYPFIDERTKHKVHVLKDEAALLEYFHPQDLPSDFA 229
            R+LLAR      +  +W+ W  WRE  KPE I E  +  +L      +TG  D      ++   R H+PG  P E   +  I  LE +  ++ +T G+G +T   D  G   +N  T  +     ++ I+++ YPE L  L++    W+F+  + ++ PF+ +RTK K+ +LK E  +L+Y   ++L +++ 
Sbjct:   56 RILLARDFDPKKSLEMWKNWVQWREQNKPETIKEQDIVEELKAGKAFLTGGYDIQKNPILVAVFRRHIPGAIPRETTEKFFIHYLEDALKKARQT-GSGRVTIFADMVGYSNKNFSTKDSDLIKKLLSILQDNYPESLGKLIVFKPTWLFKFVYAIVKPFLSKRTKEKIVLLKKEEEILKYISKEELLAEYG 246          
The following BLAST results are available for this feature:
BLAST of EWM30222.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112881|gb|EWM30222.1|2.880e-174100.00cral trio domain containing protein [Nannochlorops... [more]
gi|585109977|gb|EWM27704.1|4.264e-4138.07CRAL-TRIO domain protein [Nannochloropsis gaditana... [more]
gi|118360174|ref|XP_001013324.1|4.675e-3133.33divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|1134868678|gb|OMJ67334.1|4.736e-2929.15hypothetical protein SteCoe_35521 [Stentor coerule... [more]
gi|829171967|ref|XP_012653198.1|1.151e-2827.31divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|1134886566|gb|OMJ83991.1|1.849e-2827.44hypothetical protein SteCoe_14977 [Stentor coerule... [more]
gi|145493659|ref|XP_001432825.1|2.517e-2727.08hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145473547|ref|XP_001462437.1|5.419e-2727.75hypothetical protein [Paramecium tetraurelia strai... [more]
gi|118399667|ref|XP_001032158.1|1.642e-2629.57divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
gi|118400186|ref|XP_001032416.1|4.965e-2629.17divergent CRAL/TRIO domain protein [Tetrahymena th... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna470rna470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications