EWM25976.1, cds4696 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|585107872|gb|EWM25976.1| (cycloartenol synthase [Nannochloropsis gaditana]) HSP 1 Score: 392.889 bits (1008), Expect = 2.053e-138 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG
Sbjct: 1 MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|299115454|emb|CBN75619.1| (Cycloartenol synthase [Ectocarpus siliculosus]) HSP 1 Score: 112.849 bits (281), Expect = 1.218e-25 Identity = 67/150 (44.67%), Postives = 86/150 (57.33%), Query Frame = 0
Query: 44 YSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTE-REVLTLLGEPVPLTGEAAGRQTWHW-DPKKGKDLAGRKADY--SFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
Y Y A P +YPG + +RR W ++S GW F+ A S TE R T L LTGEAAGRQ+WHW G D + AD +F+ + NPNS DK+FR QQ+ +W+GPRP+ PK A AA K A++QMLQC+DG
Sbjct: 32 YWYYAAWPIAYPGDVVPNRLERRGRWEDKTSALPTGWKFSCARESHQRTEDRWAETGL----KLTGEAAGRQSWHWCGTDAGDDASLGAADDAPTFNPSVNPNSGDKIFRAQQLRKWEGPRPDETETPKDALGAAKKGFAFHQMLQCDDG 177
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|551676267|ref|XP_005840887.1| (hypothetical protein GUITHDRAFT_100156 [Guillardia theta CCMP2712] >gi|428185054|gb|EKX53907.1| hypothetical protein GUITHDRAFT_100156 [Guillardia theta CCMP2712]) HSP 1 Score: 89.7373 bits (221), Expect = 1.756e-18 Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 0
Query: 49 ARPTSYPGGPRAQKQKRRAAWLPRSSI--FSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKS-RPKTAREAAHKAMAYYQMLQCEDG 189
R SYPG +QKR W + + PGW F AE S +E+ + G ++GE GRQ W + + + SF ++NPNS+D ++R Q++ WKG +P + PKTA+EAA K + +Y MLQ EDG
Sbjct: 81 GRGVSYPGDALPVRQKRLGKWRKQDDMVKLEPGWTFLSAEESHDYSEKLMRDQYGVVDCMSGEPCGRQIW-----VKQTASSLQTSPSFDPSKNPNSSDLLYREQRLKAWKGRKPEEEHLEPKTAKEAAEKGIRFYSMLQNEDG 219
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|922855968|gb|KOO24370.1| (cycloartenol synthase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 80.8777 bits (198), Expect = 1.615e-14 Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 0
Query: 53 SYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPV--PLTGEAAGRQTWH---WDP-KKGKDL-AGRKADYSFSAARNPNSADKVFRTQQVNQW--KGPR-PNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
S+PGGPRA + R W ++S GW AE S T + P+ LTGEAAGRQ WH +P ++G A K F+ + NPN D+++R Q+V W +G + P+++ PKT +A KA+++Y++LQ +DG
Sbjct: 147 SHPGGPRAHRILREPQWANKTSHLDAGWRCEVAEASHMHTHTSL------PIGQTLTGEAAGRQIWHKVQLNPLQRGLSFGAEHKEKCGFNPSVNPNPEDEIWRAQRVQAWTARGNKVPDARWVPKTTLDALRKALSWYEVLQSDDG 287
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|1210523926|dbj|GAX17250.1| (cycloartenol synthase [Fistulifera solaris]) HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-10 Identity = 56/164 (34.15%), Postives = 76/164 (46.34%), Query Frame = 0
Query: 45 SSYIARPTSYPGGPRAQKQKRRAAW------LPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGK----------DLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPR---PNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
+ Y S PGGPR + +R+ W LP S W AE S A+TE GE + LTGE GR W +P K K +LA SF+ + NPNSAD +R Q + ++ P+ K P++ + A KA+ YY MLQ +DG
Sbjct: 125 TQYFLPAVSDPGGPRPHRIQRQPQWENRPIPLPESM---KQWRCVIAEESHAITEEA----FGESL-LTGEPFGRDMWTQEPYKSKLKAVDEKLVHELASGGRSDSFNPSVNPNSADIPYRAQLIREYLAAGNSPPSLKKEPQSVQAALRKAVHYYSMLQRDDG 280
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|1129177970|gb|OLP86082.1| (Cycloartenol synthase [Symbiodinium microadriaticum]) HSP 1 Score: 65.4698 bits (158), Expect = 4.144e-9 Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 0
Query: 41 ASIYSSYIARPTSYPGG--PRAQKQKRRAAWLPRSS-IFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
AS++ RP SYPG P + + A P +S I GW E A + E+L E +G+Q W + D+ F NPNSAD +FR ++N W GP+P++ ++P A HK +Y+MLQC+DG
Sbjct: 19 ASVWFLRRGRPASYPGDAVPETSRLRADAKLKPVASRIVEGGWRPKEE----AQPKNELLP---------HEVSGQQVWEFVGSTETDME------PFRPEANPNSADCIFRRAKLNAWTGPKPDT-AQPADVNAALHKGFEFYRMLQCDDG 150 The following BLAST results are available for this feature:
BLAST of EWM25976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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