EWM25976.1, cds4696 (CDS) Nannochloropsis gaditana

Overview
NameEWM25976.1
Unique Namecds4696
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:128851..128971 -
Alignment locationCM002464.1:128209..128515 -
Alignment locationCM002464.1:127808..127949 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25976.1
Productcycloartenol synthase
Orig transcript idgnl|cribi|Naga_100315g4.5222.mrna
GeneCAS
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:128851..128971 -
CM002464.1supercontigCM002464.1:128209..128515 -
CM002464.1supercontigCM002464.1:127808..127949 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|585107872|gb|EWM25976.1| (cycloartenol synthase [Nannochloropsis gaditana])

HSP 1 Score: 392.889 bits (1008), Expect = 2.053e-138
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
            MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG
Sbjct:    1 MVQREAMPGFWQTLLEKRGSSNGDACVMLPLLATILCILGASIYSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189          
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|299115454|emb|CBN75619.1| (Cycloartenol synthase [Ectocarpus siliculosus])

HSP 1 Score: 112.849 bits (281), Expect = 1.218e-25
Identity = 67/150 (44.67%), Postives = 86/150 (57.33%), Query Frame = 0
Query:   44 YSSYIARPTSYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTE-REVLTLLGEPVPLTGEAAGRQTWHW-DPKKGKDLAGRKADY--SFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
            Y  Y A P +YPG     + +RR  W  ++S    GW F+ A  S   TE R   T L     LTGEAAGRQ+WHW     G D +   AD   +F+ + NPNS DK+FR QQ+ +W+GPRP+    PK A  AA K  A++QMLQC+DG
Sbjct:   32 YWYYAAWPIAYPGDVVPNRLERRGRWEDKTSALPTGWKFSCARESHQRTEDRWAETGL----KLTGEAAGRQSWHWCGTDAGDDASLGAADDAPTFNPSVNPNSGDKIFRAQQLRKWEGPRPDETETPKDALGAAKKGFAFHQMLQCDDG 177          
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|551676267|ref|XP_005840887.1| (hypothetical protein GUITHDRAFT_100156 [Guillardia theta CCMP2712] >gi|428185054|gb|EKX53907.1| hypothetical protein GUITHDRAFT_100156 [Guillardia theta CCMP2712])

HSP 1 Score: 89.7373 bits (221), Expect = 1.756e-18
Identity = 52/144 (36.11%), Postives = 75/144 (52.08%), Query Frame = 0
Query:   49 ARPTSYPGGPRAQKQKRRAAWLPRSSI--FSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKS-RPKTAREAAHKAMAYYQMLQCEDG 189
             R  SYPG     +QKR   W  +  +    PGW F  AE S   +E+ +    G    ++GE  GRQ W       +  +  +   SF  ++NPNS+D ++R Q++  WKG +P  +   PKTA+EAA K + +Y MLQ EDG
Sbjct:   81 GRGVSYPGDALPVRQKRLGKWRKQDDMVKLEPGWTFLSAEESHDYSEKLMRDQYGVVDCMSGEPCGRQIW-----VKQTASSLQTSPSFDPSKNPNSSDLLYREQRLKAWKGRKPEEEHLEPKTAKEAAEKGIRFYSMLQNEDG 219          
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|922855968|gb|KOO24370.1| (cycloartenol synthase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 80.8777 bits (198), Expect = 1.615e-14
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 0
Query:   53 SYPGGPRAQKQKRRAAWLPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPV--PLTGEAAGRQTWH---WDP-KKGKDL-AGRKADYSFSAARNPNSADKVFRTQQVNQW--KGPR-PNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
            S+PGGPRA +  R   W  ++S    GW    AE S   T   +      P+   LTGEAAGRQ WH    +P ++G    A  K    F+ + NPN  D+++R Q+V  W  +G + P+++  PKT  +A  KA+++Y++LQ +DG
Sbjct:  147 SHPGGPRAHRILREPQWANKTSHLDAGWRCEVAEASHMHTHTSL------PIGQTLTGEAAGRQIWHKVQLNPLQRGLSFGAEHKEKCGFNPSVNPNPEDEIWRAQRVQAWTARGNKVPDARWVPKTTLDALRKALSWYEVLQSDDG 287          
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|1210523926|dbj|GAX17250.1| (cycloartenol synthase [Fistulifera solaris])

HSP 1 Score: 69.3218 bits (168), Expect = 2.149e-10
Identity = 56/164 (34.15%), Postives = 76/164 (46.34%), Query Frame = 0
Query:   45 SSYIARPTSYPGGPRAQKQKRRAAW------LPRSSIFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGK----------DLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPR---PNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
            + Y     S PGGPR  + +R+  W      LP S      W    AE S A+TE       GE + LTGE  GR  W  +P K K          +LA      SF+ + NPNSAD  +R Q + ++       P+ K  P++ + A  KA+ YY MLQ +DG
Sbjct:  125 TQYFLPAVSDPGGPRPHRIQRQPQWENRPIPLPESM---KQWRCVIAEESHAITEEA----FGESL-LTGEPFGRDMWTQEPYKSKLKAVDEKLVHELASGGRSDSFNPSVNPNSADIPYRAQLIREYLAAGNSPPSLKKEPQSVQAALRKAVHYYSMLQRDDG 280          
BLAST of EWM25976.1 vs. NCBI_GenBank
Match: gi|1129177970|gb|OLP86082.1| (Cycloartenol synthase [Symbiodinium microadriaticum])

HSP 1 Score: 65.4698 bits (158), Expect = 4.144e-9
Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 0
Query:   41 ASIYSSYIARPTSYPGG--PRAQKQKRRAAWLPRSS-IFSPGWVFAEAETSVAVTEREVLTLLGEPVPLTGEAAGRQTWHWDPKKGKDLAGRKADYSFSAARNPNSADKVFRTQQVNQWKGPRPNSKSRPKTAREAAHKAMAYYQMLQCEDG 189
            AS++     RP SYPG   P   + +  A   P +S I   GW   E     A  + E+L           E +G+Q W +      D+        F    NPNSAD +FR  ++N W GP+P++ ++P     A HK   +Y+MLQC+DG
Sbjct:   19 ASVWFLRRGRPASYPGDAVPETSRLRADAKLKPVASRIVEGGWRPKEE----AQPKNELLP---------HEVSGQQVWEFVGSTETDME------PFRPEANPNSADCIFRRAKLNAWTGPKPDT-AQPADVNAALHKGFEFYRMLQCDDG 150          
The following BLAST results are available for this feature:
BLAST of EWM25976.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585107872|gb|EWM25976.1|2.053e-138100.00cycloartenol synthase [Nannochloropsis gaditana][more]
gi|299115454|emb|CBN75619.1|1.218e-2544.67Cycloartenol synthase [Ectocarpus siliculosus][more]
gi|551676267|ref|XP_005840887.1|1.756e-1836.11hypothetical protein GUITHDRAFT_100156 [Guillardia... [more]
gi|922855968|gb|KOO24370.1|1.615e-1436.73cycloartenol synthase [Chrysochromulina sp. CCMP29... [more]
gi|1210523926|dbj|GAX17250.1|2.149e-1034.15cycloartenol synthase [Fistulifera solaris][more]
gi|1129177970|gb|OLP86082.1|4.144e-932.24Cycloartenol synthase [Symbiodinium microadriaticu... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4708rna4708Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications