EWM25978.1, cds4694 (CDS) Nannochloropsis gaditana

Overview
NameEWM25978.1
Unique Namecds4694
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:124386..124598 -
Alignment locationCM002464.1:124094..124171 -
Alignment locationCM002464.1:123733..123958 -

Link to JBrowse

Properties
Property NameValue
Start range123733
Start range.
Protein idEWM25978.1
Producthipothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101364g1.6962.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:124386..124598 -
CM002464.1supercontigCM002464.1:124094..124171 -
CM002464.1supercontigCM002464.1:123733..123958 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
GO:0035091phosphatidylinositol binding
Vocabulary: INTERPRO
TermDefinition
IPR001683Phox
Homology
[Close]
BLAST of EWM25978.1 vs. NCBI_GenBank
Match: gi|585107876|gb|EWM25978.1| (hipothetical protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 343.199 bits (879), Expect = 2.588e-119
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 
Query:    1 MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVPPPYLETIWGEGRGKGMGEGGTEGGAGGRAGKGGGRGEGGWEGGRAG 172
            MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVPPPYLETIWGEGRGKGMGEGGTEGGAGGRAGKGGGRGEGGWEGGRAG
Sbjct:    1 MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVPPPYLETIWGEGRGKGMGEGGTEGGAGGRAGKGGGRGEGGWEGGRAG 172
[Close]
BLAST of EWM25978.1 vs. NCBI_GenBank
Match: gi|553176776|ref|XP_005852399.1| (hypothetical protein NGA_0729000, partial [Nannochloropsis gaditana CCMP526] >gi|422296134|gb|EKU23433.1| hypothetical protein NGA_0729000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 259.61 bits (662), Expect = 5.475e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 
Query:    1 MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVP 126
            MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVP
Sbjct:    1 MINIAIEGFGIVREPGRSPHPVYYITVSQPAHAASWTVYRGLAAFRTLSDGLRELIPGLRPCPNPLPGSVQGMAGLTGSTVDNLTVQGLHGGAQQLQAWLQHARLFPAVEETSVYRAFCLDAANVP 126
The following BLAST results are available for this feature:
BLAST of EWM25978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107876|gb|EWM25978.1|2.588e-119100.00hipothetical protein, partial [Nannochloropsis gad... [more]
gi|553176776|ref|XP_005852399.1|5.475e-87100.00hypothetical protein NGA_0729000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4706rna4706Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications