EWM25986.1, cds4690 (CDS) Nannochloropsis gaditana

Overview
NameEWM25986.1
Unique Namecds4690
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:115340..116155 -

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Properties
Property NameValue
Protein idEWM25986.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100151g4.9620.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:115340..116155 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25986.1 vs. NCBI_GenBank
Match: gi|585107887|gb|EWM25986.1| (hypothetical protein Naga_100151g4 [Nannochloropsis gaditana])

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MGKQRLVRGVHGIGRTPHRLLAVLSVSLFAYSRQTVSAFLLPAVSSHSSATKLSAVSNRYDDCVSRAISIQVASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNSKRQKQQGEKSANNAASSVAETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271
            MGKQRLVRGVHGIGRTPHRLLAVLSVSLFAYSRQTVSAFLLPAVSSHSSATKLSAVSNRYDDCVSRAISIQVASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNSKRQKQQGEKSANNAASSVAETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL
Sbjct:    1 MGKQRLVRGVHGIGRTPHRLLAVLSVSLFAYSRQTVSAFLLPAVSSHSSATKLSAVSNRYDDCVSRAISIQVASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNSKRQKQQGEKSANNAASSVAETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271          
BLAST of EWM25986.1 vs. NCBI_GenBank
Match: gi|298710697|emb|CBJ32121.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 96.6709 bits (239), Expect = 4.612e-20
Identity = 85/259 (32.82%), Postives = 127/259 (49.03%), Query Frame = 0
Query:   24 LSVSLFA-----YSRQTVSAFLLPAVSSHSSATKLSAVSNRYDDCVSRAISIQVASVAILAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNS----KRQKQQGEKSANNAASSVAETASPSDPEELIESMTDTLYALSPLIKKEGWDDVLAAVKRKPLCLLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSN-RVI-FFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271
            L V+LFA     +S Q V AF   AV S +   +           +SRA  ++       AF A   +AA  +         A P T ++   +    KR + Q E SA    SSV    +P +P E++ +++  L  +  L+KKE W D L  ++  PL  L +P LG  +  ++++ALG    K+  + E   EA + L+++ D  FSN R + FFNS D +QV  LA  R P DL+EPL LL DT  LV  + + +
Sbjct:   29 LGVALFAVVNAPFSVQRVGAF---AVRSCARCKRSQPAMTVDSPPLSRAQLLR-------AFPALVGVAAFHSATAAEPARAALPTTEDYAFGTGSKVKRPEVQDELSAPLPKSSV----NPDNPVEVVRAVSGELDRMQTLVKKERWGDALTRLRSYPLTALKSPTLGMKSVGDVSRALGVSNSKASDILEASMEAGLTLREVEDVVFSNTRTLEFFNSADYKQVEDLAKDRTPTDLTEPLQLLSDTKKLVGGVADLM 273          
BLAST of EWM25986.1 vs. NCBI_GenBank
Match: gi|551631217|ref|XP_005818507.1| (hypothetical protein GUITHDRAFT_122286 [Guillardia theta CCMP2712] >gi|428162375|gb|EKX31527.1| hypothetical protein GUITHDRAFT_122286 [Guillardia theta CCMP2712])

HSP 1 Score: 82.4185 bits (202), Expect = 7.003e-15
Identity = 58/208 (27.88%), Postives = 101/208 (48.56%), Query Frame = 0
Query:   78 LAFVASPSIAAVPTLQEYYGEEGAQPKTNNFILNSKRQKQQGEKSANNAASSVAETASPSDPEELIESMTDT---LYALSPLIKKEGWDDVLAAVKRKPLC-----------LLLTPFLGYGNAAELAKALGGDLKKSRALEERRQEASVALQQLVDYAFSNRVIFFNSLDKQQVTALASGRAPPDLSEPLGLLEDTVGLVKALQETL 271
            LAF+     AA+P+ +EY    G        ++ +K+  ++  K            A P+  EE +E++ D    + +LS   K   WDD+ A +   PL            +L   F G+ +  EL   +  D K +  +E+ R++AS+ L +L ++AF+NRV+FFN  DK+ V  L+      DL E L L++D+   ++ + ++L
Sbjct:   69 LAFLPGKLQAAIPSQEEYNVGSGT-------VVRAKQSNREVRKEFK---------APPASKEEAVETLKDAERLVDSLSEYAKNMAWDDIRAEMLTAPLANQKFSKPDRPAILFLSFFGFKSEKELMTVMKIDKKAATRIEKLRKDASLTLMELAEFAFTNRVVFFNEEDKRTVAELSEKNLQVDLDEALRLIQDSKERIQEIIQSL 260          
The following BLAST results are available for this feature:
BLAST of EWM25986.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585107887|gb|EWM25986.1|0.000e+0100.00hypothetical protein Naga_100151g4 [Nannochloropsi... [more]
gi|298710697|emb|CBJ32121.1|4.612e-2032.82expressed unknown protein [Ectocarpus siliculosus][more]
gi|551631217|ref|XP_005818507.1|7.003e-1527.88hypothetical protein GUITHDRAFT_122286 [Guillardia... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4702rna4702Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications