EWM25995.1, cds4678 (CDS) Nannochloropsis gaditana

Overview
NameEWM25995.1
Unique Namecds4678
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:68576..68688 -
Alignment locationCM002464.1:67840..68404 -
Alignment locationCM002464.1:67428..67531 -
Alignment locationCM002464.1:67182..67297 -
Alignment locationCM002464.1:66622..66914 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25995.1
Productendo-beta- -glucanase
Partialtrue
Orig transcript idgnl|cribi|Naga_100897g4.3246.mrna
GbkeyCDS
End range.
End range68688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:68576..68688 -
CM002464.1supercontigCM002464.1:67840..68404 -
CM002464.1supercontigCM002464.1:67428..67531 -
CM002464.1supercontigCM002464.1:67182..67297 -
CM002464.1supercontigCM002464.1:66622..66914 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR0089286-hairpin_glycosidase-like
IPR001701Glyco_hydro_9
IPR0123416hp_glycosidase
Homology
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|585107903|gb|EWM25995.1| (endo-beta- -glucanase, partial [Nannochloropsis gaditana])

HSP 1 Score: 820.846 bits (2119), Expect = 0.000e+0
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 IPLDCGRGRSLPVGPSRDHQLSSPLLQSHLPQPGLPASHEYRKRHGCGCDCLSKPRSSLRSHAFAARGGTLCIRRHVSRGLDSKRDNPRRKFLQRRWPLLGRACLCRRLVAQGTAAVRFPYCLFFPFFLLPQADVLSFESSAPLLFWPPLSPVRAHGQDMLYEFIFTQISPSLPPILAFIQATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRGIRY 396
            IPLDCGRGRSLPVGPSRDHQLSSPLLQSHLPQPGLPASHEYRKRHGCGCDCLSKPRSSLRSHAFAARGGTLCIRRHVSRGLDSKRDNPRRKFLQRRWPLLGRACLCRRLVAQGTAAVRFPYCLFFPFFLLPQADVLSFESSAPLLFWPPLSPVRAHGQDMLYEFIFTQISPSLPPILAFIQATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRGIRY
Sbjct:    1 IPLDCGRGRSLPVGPSRDHQLSSPLLQSHLPQPGLPASHEYRKRHGCGCDCLSKPRSSLRSHAFAARGGTLCIRRHVSRGLDSKRDNPRRKFLQRRWPLLGRACLCRRLVAQGTAAVRFPYCLFFPFFLLPQADVLSFESSAPLLFWPPLSPVRAHGQDMLYEFIFTQISPSLPPILAFIQATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRGIRY 396          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|585100259|gb|EWM20555.1| (beta- -endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 165.622 bits (418), Expect = 1.153e-42
Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 0
Query:  179 FIQATGKKEYLDKAIATFYQ-CCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKK--------SFLIGFGPSWPNSYHHRAASC-KGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSL 391
              +ATG++EYLDKA + +   CC     Y      W     G+ LLLY+ T+ + +K    N     + K  +TPKGL+Y+++WG NRYAAN AF ALVAA++G  V+  R++A  QI+YMLGD   G          S++ G+G  +P + HHR +SC  GT+C C     PH+L+G L+GGP  +D  SD  C D+   EV  D++AGFT A+  L+HLSL
Sbjct:  292 LYEATGEQEYLDKAESLYAGGCCGSAWSYS-----WDAKAPGVQLLLYKHTRKSQYKTDSSNFVGGAIGK-GQTPKGLAYWDKWGSNRYAANGAFIALVAADYGIHVEDGRAWAMQQIHYMLGDAHGGINNATGLPFFSYVCGYGDDFPRAPHHRGSSCWSGTNCNCGSSPQPHVLYGALVGGPGNNDDYSDS-CSDYTRNEVTTDYNAGFTAALGALRHLSL 507          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|585107739|gb|EWM25871.1| (endo-beta- -glucanase [Nannochloropsis gaditana])

HSP 1 Score: 157.147 bits (396), Expect = 1.277e-39
Identity = 94/224 (41.96%), Postives = 132/224 (58.93%), Query Frame = 0
Query:  181 QATGKKEYLDKAI--ATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINR--------QKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRGI 394
            +ATG   YL +A+  A  +      G +      W     G+ LLLY+ T+  D K A +          Q +    I RTP+GL+YY  WGP R+AAN AF AL+AA+ G     +R++A SQI+YMLGD  +G  S+++GFG ++P + HHRAASC    C C      + L+G L+GGP++ D   D+ C D+ H EV++D++AGF  AVAGLKHLSL G+
Sbjct:  286 KATGCASYLSQALNLAEIFNKSDNMGAF-----GWDSKDAGVYLLLYQLTR--DTKHAKVFASYLADWLPQASSATAIKRTPRGLTYYLTWGPLRWAANTAFLALLAADMGLSPGPYRAFARSQIHYMLGD--NGNFSYVVGFGSTFPKAIHHRAASCGRYGCICDTTPSANTLYGALVGGPDEKDMYLDD-CRDYKHTEVSVDYNAGFQGAVAGLKHLSLMGL 499          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|585108151|gb|EWM26157.1| (beta- -endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 155.606 bits (392), Expect = 4.128e-39
Identity = 88/220 (40.00%), Postives = 131/220 (59.55%), Query Frame = 0
Query:  181 QATGKKEYLDKAIATFY-QCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYML---GDCCDGKK----SFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLR 392
            +AT   +YL+ A   +Y  CC V    + S   W   +  + L+LY+ T+   + D       ++M + PRTPKGL ++++W PNRY+AN AF ALVAA+ G     + ++A SQI+Y+L   GD     K    S+ IGFG ++P + HHR ASC    C C+    P+IL+G ++GGP K+D  SD+ C +++  EVA D++AGFT+A AGL  L L+
Sbjct:  258 KATKDAKYLEMAENDYYDNCCAVTNKTEFS---WDRKSSAVQLILYDLTKKEKYADGFAGFMDSWMYETPRTPKGLVFFDKWAPNRYSANTAFLALVAAKHGLVPTTYIAFAKSQIDYILKAGGDINPETKQPYYSYQIGFGDNFPRAPHHRGASCGNGWCGCSGSPQPNILYGAIVGGPGKNDDYSDD-CGNYVTNEVATDYNAGFTSACAGLAQLVLK 473          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|1176089015|ref|XP_020614867.1| (uncharacterized protein LOC110053019 [Orbicella faveolata])

HSP 1 Score: 158.688 bits (400), Expect = 6.493e-39
Identity = 93/221 (42.08%), Postives = 135/221 (61.09%), Query Frame = 0
Query:  181 QATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFM--NKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDF------PHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRG 393
            +AT  K+YL KA   +Y+   + G  +     W D   G+ +LL E T+   +K AV     +++  +++  TPKGL++ ++WGPNRY+AN AF ALVAA+ G +   FR +A  QI+YMLGD     +SF++GFG + P   HHR++SC  +   C   +F      P  L+G L+GGP K+D  +D+   DFI  EVA D++AGF +AVAGLKHL+L G
Sbjct:  591 KATKDKKYLTKA-EQYYKQFGMNG--KPWAFSWDDKKAGVQVLLAEITKKASYKQAVDTFITSWLPGHEVHYTPKGLAWRDQWGPNRYSANTAFLALVAADQGVKPSAFREFAKKQIHYMLGDSG---RSFVVGFGTNPPERPHHRSSSCPLSPVPCNWDNFNSPSANPQTLYGALVGGPGKNDEYTDD-RKDFIKNEVATDYNAGFQSAVAGLKHLALTG 804          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|1191032496|ref|XP_020893299.1| (uncharacterized protein LOC110232443 [Exaiptasia pallida])

HSP 1 Score: 157.147 bits (396), Expect = 2.591e-38
Identity = 91/220 (41.36%), Postives = 131/220 (59.55%), Query Frame = 0
Query:  181 QATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFM--NKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDF------PHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLR 392
            +AT K EYL KA  ++YQ   + G  +     W D   G  LLL E T  +++K+ +     +++    +  TPKGL++ ++WGPNRY+AN AF ALVAA+ G + D +R++A  QI+YMLGD     +SF++GFG + P   HHR++SC      CT          P +L G L+GGP+ +D   D+   D+I  EVA D++AGF +AVAGLK LSL 
Sbjct:  620 RATNKAEYLSKA-ESYYQQFNMNG--KAWTFSWDDKKAGAQLLLAEITGKSNYKNDIKGYLDSWLPGRDVKYTPKGLAWRDQWGPNRYSANTAFLALVAADNGLKPDIYRNFAKKQIHYMLGDSG---RSFVVGFGANPPKRPHHRSSSCPDRPAPCTHDALNAPGANPQVLXGALVGGPDVNDNFKDD-RKDYIENEVATDYNAGFQSAVAGLKXLSLN 832          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|999979262|gb|KXJ18436.1| (Endoglucanase A [Exaiptasia pallida])

HSP 1 Score: 156.762 bits (395), Expect = 3.231e-38
Identity = 91/220 (41.36%), Postives = 131/220 (59.55%), Query Frame = 0
Query:  181 QATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFM--NKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDF------PHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLR 392
            +AT K EYL KA  ++YQ   + G  +     W D   G  LLL E T  +++K+ +     +++    +  TPKGL++ ++WGPNRY+AN AF ALVAA+ G + D +R++A  QI+YMLGD     +SF++GFG + P   HHR++SC      CT          P +L G L+GGP+ +D   D+   D+I  EVA D++AGF +AVAGLK LSL 
Sbjct:  645 RATNKAEYLSKA-ESYYQQFNMNG--KAWTFSWDDKKAGAQLLLAEITGKSNYKNDIKGYLDSWLPGRDVKYTPKGLAWRDQWGPNRYSANTAFLALVAADNGLKPDIYRNFAKKQIHYMLGDSG---RSFVVGFGANPPKRPHHRSSSCPDRPAPCTHDALNAPGANPQVLXGALVGGPDVNDNFKDD-RKDYIENEVATDYNAGFQSAVAGLKXLSLN 857          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|585112583|gb|EWM29977.1| (beta- -endoglucanase [Nannochloropsis gaditana])

HSP 1 Score: 153.295 bits (386), Expect = 3.685e-38
Identity = 80/196 (40.82%), Postives = 117/196 (59.69%), Query Frame = 0
Query:  179 FIQATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFMNKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLG-------DCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDFPHILWGGLLGGP-EKDDTISDEGCPDF 366
              +ATG+ +YL KA   F  CC    G      DW +   G+ L+LY  TQ   ++  + N  + ++ K P+TPKGL++++ WG NRY AN AF AL+AA +G     + ++A S+I Y+L        D    K S+LIGFG  +P + HHR++SCKGT C C+++  P+IL+G L+GGP EKDD + D  C D+
Sbjct:  252 LFKATGEADYLHKAEKFFDACCGGKDGTTKVDYDWGEKGPGVQLMLYHLTQAEKYRQGITNYLQTWLKK-PKTPKGLTFFSPWGSNRYTANTAFIALMAATYGLNPSKYSAWAESEITYILTAGGKVNPDTGKPKYSYLIGFGEDFPRAPHHRSSSCKGTKCDCSRKPHPYILYGALVGGPGEKDDYVDD--CTDY 444          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|1191032488|ref|XP_020893295.1| (uncharacterized protein LOC110232439 [Exaiptasia pallida] >gi|999979281|gb|KXJ18455.1| Endoglucanase A [Exaiptasia pallida])

HSP 1 Score: 148.288 bits (373), Expect = 1.317e-36
Identity = 88/220 (40.00%), Postives = 127/220 (57.73%), Query Frame = 0
Query:  181 QATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFM--NKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGFEVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQD------FPHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLR 392
            +AT    YL KA A +         +  S   W + T G+ +LL E T  N +K  V     +++  N +  TPKGL++  +WGPNRYAAN AF AL+AA  G + + +R++A  QI+YMLGD     +SFL+GFG S+P   HH ++SC      C+  D       P IL G L+GGP+++D  +DE   D++  EV  D++AGF +AVAGLK L++ 
Sbjct:  254 RATXNVNYLKKAEAYYKTFGMSDKPWAFS---WDEKTAGVQVLLAEITGKNSYKKDVQEYLDSWLPGNDVKYTPKGLAWRAKWGPNRYAANTAFLALLAANNGMKPNDYRTFAKKQIHYMLGDSG---QSFLVGFGKSFPQRPHHASSSCPXKPXPCSWNDNRNPGPNPQILTGALVGGPDQNDNFNDERS-DYVQNEVTTDYNAGFQSAVAGLKQLAMN 466          
BLAST of EWM25995.1 vs. NCBI_GenBank
Match: gi|762128785|ref|XP_011447501.1| (PREDICTED: endoglucanase 13-like [Crassostrea gigas])

HSP 1 Score: 149.058 bits (375), Expect = 1.314e-35
Identity = 95/221 (42.99%), Postives = 128/221 (57.92%), Query Frame = 0
Query:  182 ATGKKEYLDKAIATFYQCCYVPGGYQVSVLDWADMTMGINLLLYEATQWNDFKDAVINRQKAFM--NKIPRTPKGLSYYNEWGPNRYAANAAFTALVAAEFGF-EVDYFRSYAASQINYMLGDCCDGKKSFLIGFGPSWPNSYHHRAASCKGTDCRCTQQDF------PHILWGGLLGGPEKDDTISDEGCPDFIHMEVALDFSAGFTTAVAGLKHLSLRG 393
            AT K  Y   AI TFY   Y PG +     DW D TM  ++LLYE TQ   +K AV N   ++M    +  TP GL++  EWG  RY+ANAAF AL+AA+ G      ++ +A SQI+YMLGD  D   S++IG+G ++P   HHRA+SC      C   D+      PH+L G L+GGP++ D   D    +F   EVA D++AGF +AVAGL H ++ G
Sbjct:  548 ATNKTGYRSDAI-TFYNS-YSPGRW---AYDWDDKTMLCDVLLYEITQETKYKSAVENFVTSYMPGGSVQYTPCGLAWRLEWGSLRYSANAAFIALLAADAGIGNTANYKQWAMSQIHYMLGDNADA-FSYVIGYGSNYPLKPHHRASSCDSPPAVCDWNDYNSPDPNPHVLQGALVGGPDQYDNYED-ARDNFRTNEVACDYNAGFQSAVAGLLHFAVNG 761          
The following BLAST results are available for this feature:
BLAST of EWM25995.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107903|gb|EWM25995.1|0.000e+0100.00endo-beta- -glucanase, partial [Nannochloropsis ga... [more]
gi|585100259|gb|EWM20555.1|1.153e-4242.15beta- -endoglucanase [Nannochloropsis gaditana][more]
gi|585107739|gb|EWM25871.1|1.277e-3941.96endo-beta- -glucanase [Nannochloropsis gaditana][more]
gi|585108151|gb|EWM26157.1|4.128e-3940.00beta- -endoglucanase [Nannochloropsis gaditana][more]
gi|1176089015|ref|XP_020614867.1|6.493e-3942.08uncharacterized protein LOC110053019 [Orbicella fa... [more]
gi|1191032496|ref|XP_020893299.1|2.591e-3841.36uncharacterized protein LOC110232443 [Exaiptasia p... [more]
gi|999979262|gb|KXJ18436.1|3.231e-3841.36Endoglucanase A [Exaiptasia pallida][more]
gi|585112583|gb|EWM29977.1|3.685e-3840.82beta- -endoglucanase [Nannochloropsis gaditana][more]
gi|1191032488|ref|XP_020893295.1|1.317e-3640.00uncharacterized protein LOC110232439 [Exaiptasia p... [more]
gi|762128785|ref|XP_011447501.1|1.314e-3542.99PREDICTED: endoglucanase 13-like [Crassostrea giga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4690rna4690Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications