EWM26020.1, cds4660 (CDS) Nannochloropsis gaditana

Overview
NameEWM26020.1
Unique Namecds4660
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:23688..23774 -
Alignment locationCM002464.1:23443..23517 -
Alignment locationCM002464.1:22839..23141 -
Alignment locationCM002464.1:22325..22750 -

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Properties
Property NameValue
Protein idEWM26020.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100150g9.10696.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:23688..23774 -
CM002464.1supercontigCM002464.1:23443..23517 -
CM002464.1supercontigCM002464.1:22839..23141 -
CM002464.1supercontigCM002464.1:22325..22750 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26020.1 vs. NCBI_GenBank
Match: gi|585107935|gb|EWM26020.1| (hypothetical protein Naga_100150g9 [Nannochloropsis gaditana])

HSP 1 Score: 599.356 bits (1544), Expect = 0.000e+0
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 0 
Query:    1 MDSFATPELPNTNSDRGNVGERHIVRPNDANKIPATAVAGPFKPATPPAVVGGDPYQGSGPSNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGVDDLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGSTLIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERAVFLGTFRSPSDTKGVWGLQVEGVEGHNARD 296
            MDSFATPELPNTNSDRGNVGERHIVRPNDANKIPATAVAGPFKPATPPAVVGGDPYQGSGPSNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGVDDLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGSTLIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERAVFLGTFRSPSDTKGVWGLQVEGVEGHNARD
Sbjct:    1 MDSFATPELPNTNSDRGNVGERHIVRPNDANKIPATAVAGPFKPATPPAVVGGDPYQGSGPSNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGVDDLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGSTLIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERAVFLGTFRSPSDTKGVWGLQVEGVEGHNARD 296
[Close]
BLAST of EWM26020.1 vs. NCBI_GenBank
Match: gi|553185796|ref|XP_005854308.1| (hypothetical protein NGA_0190200, partial [Nannochloropsis gaditana CCMP526] >gi|422294747|gb|EKU22047.1| hypothetical protein NGA_0190200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 480.33 bits (1235), Expect = 7.797e-164
Identity = 238/267 (89.14%), Postives = 239/267 (89.51%), Query Frame = 0 
Query:    1 MDSFATPELPNTNSDRGNVGERHIVRPNDANKIPATAVAGPFKPATPPAVVGGDPYQGSGPSNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGVDDLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGSTLIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERAV 267
            MDSFATPELPNTNSDRGNVGERHIVRPND                         PYQGSG SNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGV+DLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGS LIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERA 
Sbjct:   73 MDSFATPELPNTNSDRGNVGERHIVRPND-------------------------PYQGSGSSNWPPSFQDRDSTEDTSYEKRGRQGGRALQEEEGVNDLELENGDFDEDSTSMERNGKDWAGREAFDSGFEDLWRKLDKWAPGSREEASHSTLAMSQALSEGARVSYAPLSYPSGADLAPNPETERAAAGSFQKSVMEEEGSALIERAFVDQRVPASQLVGDYKPEHPVPAPGSSAMPADAQQSLGLPDTGEWKMSMLKEEEEERAT 314
The following BLAST results are available for this feature:
BLAST of EWM26020.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107935|gb|EWM26020.1|0.000e+0100.00hypothetical protein Naga_100150g9 [Nannochloropsi... [more]
gi|553185796|ref|XP_005854308.1|7.797e-16489.14hypothetical protein NGA_0190200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4672rna4672Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications