EWM26017.1, cds4657 (CDS) Nannochloropsis gaditana

Overview
NameEWM26017.1
Unique Namecds4657
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:16155..16363 -
Alignment locationCM002464.1:15810..15953 -
Alignment locationCM002464.1:15498..15690 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26017.1
Productferredoxin
Orig transcript idgnl|cribi|Naga_100150g6.10693.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:16155..16363 -
CM002464.1supercontigCM002464.1:15810..15953 -
CM002464.1supercontigCM002464.1:15498..15690 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|585107932|gb|EWM26017.1| (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 368.237 bits (944), Expect = 6.929e-129
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0
Query:    1 MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181
            MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK
Sbjct:    1 MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|553185802|ref|XP_005854309.1| (hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526] >gi|422294748|gb|EKU22048.1| hypothetical protein NGA_0190300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 242.662 bits (618), Expect = 5.584e-80
Identity = 120/130 (92.31%), Postives = 123/130 (94.62%), Query Frame = 0
Query:    1 MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVT 130
            MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNG G   T   +++
Sbjct:    1 MRATPASQSSFLFFVFFWSLISSPVSGFLLQHPFSRKHQSCSRCLSSPELGPLPGPAPGPPPEPSPPLPSKGIVTVLGPDGAQLRVIEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGLGHGITRWTRIS 130          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|299470431|emb|CBN80192.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.227 bits (269), Expect = 1.236e-25
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0
Query:   87 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVT-SPSWGLRSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKK 179
            ++AK G NLRKTL A K++VYD++GKMTNCNG GQCGTCVV+V  +  W  RSE+EA K LKGR     E  RL+CQT ++ G+AT+V +PPKK
Sbjct:  173 LKAKTGDNLRKTLLAGKVEVYDMVGKMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGK-LKGR----PESQRLSCQTVIQ-GDATIVTKPPKK 260          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|938300546|gb|KPQ34106.1| (2Fe-2S ferredoxin [Phormidesmis priestleyi Ana])

HSP 1 Score: 79.7221 bits (195), Expect = 7.003e-16
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 0
Query:   87 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKK 179
            IEA  GSNLR   Q + ID+Y  MGK+T C G GQCGTCVV +   +  L  R+  E +K+L+ R        RLACQTT++ G A+VV +P KK
Sbjct:   13 IEASLGSNLRFKAQENNIDIYTFMGKLTQCGGYGQCGTCVVDIVEGAENLSPRTAVE-EKMLRKRPSS----CRLACQTTIQ-GSASVVTKPDKK 101          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|505029192|ref|WP_015216294.1| (ferredoxin [Anabaena cylindrica] >gi|428680912|gb|AFZ59678.1| ferredoxin [Anabaena cylindrica PCC 7122] >gi|1210084134|dbj|BAY03276.1| ferredoxin [Anabaena cylindrica PCC 7122])

HSP 1 Score: 76.2554 bits (186), Expect = 5.517e-15
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   87 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGES-EEYRLACQTTVERGEATVVVRP 176
            I    G+NLR     + ID+Y L+GKMTNC GAGQCGTC+V+V      L  R+++E       RKF +  + YRLACQT V  G  +VV +P
Sbjct:   13 IVTADGANLRLKAMENNIDIYTLIGKMTNCGGAGQCGTCIVQVVEGLENLSPRTDFE------NRKFKKKPDNYRLACQTLVN-GPVSVVTKP 98          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|748153534|ref|WP_039727861.1| (iron ABC transporter substrate-binding protein [Lyngbya confervoides] >gi|746958122|gb|KIF15661.1| iron ABC transporter substrate-binding protein [Aphanocapsa montana BDHKU210001] >gi|746984891|gb|KIF40583.1| iron ABC transporter substrate-binding protein [Lyngbya confervoides BDU141951])

HSP 1 Score: 74.7146 bits (182), Expect = 2.002e-14
Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = 0
Query:   89 AKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKK 179
            A  G+NLR     + ID+Y L+GKM NC G GQCGTCVV++T  S  L  R++ E  K+ K       E  RLACQT V  G+ TV  +P KK
Sbjct:   15 AADGANLRYKAMENDIDIYTLVGKMMNCGGYGQCGTCVVEITEGSENLSPRTQVEERKLRK-----RPENCRLACQTLV-NGDITVKTKPKKK 101          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|1121331620|ref|WP_073639519.1| (iron ABC transporter substrate-binding protein [Nostoc calcicola] >gi|1115278495|gb|OKH41797.1| iron ABC transporter substrate-binding protein [Nostoc calcicola FACHB-389])

HSP 1 Score: 74.7146 bits (182), Expect = 2.393e-14
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   87 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRP 176
            + A  G+NLR     + ID+Y L+GKMTNC G GQCGTC+V++      L  R++ E  K+ K     + E YRLACQT V  G  +VV +P
Sbjct:   13 VVAADGANLRLKAMQNNIDIYTLIGKMTNCGGYGQCGTCIVEIVEGQQNLSPRTDVENRKLKK-----KPENYRLACQTLVN-GPVSVVTKP 98          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|750617793|ref|WP_040899661.1| (iron ABC transporter substrate-binding protein [Xenococcus sp. PCC 7305])

HSP 1 Score: 74.7146 bits (182), Expect = 3.043e-14
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   92 GSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181
            G+NLR+    +KID+Y L GK+TNC G GQCGTCVV++      L  R+ +E  K+ K     + + YRLACQ TV  G  TV  +P  K K
Sbjct:   18 GANLRERALENKIDIYTLKGKLTNCGGYGQCGTCVVEIVEGMENLSPRTAFEQRKLKK-----KPDSYRLACQATVN-GSVTVATKPKLKDK 103          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|442790976|gb|ELS00477.1| (ferredoxin [Xenococcus sp. PCC 7305])

HSP 1 Score: 74.7146 bits (182), Expect = 3.177e-14
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 0
Query:   92 GSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGESEEYRLACQTTVERGEATVVVRPPKKGK 181
            G+NLR+    +KID+Y L GK+TNC G GQCGTCVV++      L  R+ +E  K+ K     + + YRLACQ TV  G  TV  +P  K K
Sbjct:   23 GANLRERALENKIDIYTLKGKLTNCGGYGQCGTCVVEIVEGMENLSPRTAFEQRKLKK-----KPDSYRLACQATVN-GSVTVATKPKLKDK 108          
BLAST of EWM26017.1 vs. NCBI_GenBank
Match: gi|501375522|ref|WP_012407088.1| (iron ABC transporter substrate-binding protein [Nostoc punctiforme] >gi|186463261|gb|ACC79062.1| ferredoxin [Nostoc punctiforme PCC 73102])

HSP 1 Score: 73.559 bits (179), Expect = 6.201e-14
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   87 IEAKPGSNLRKTLQASKIDVYDLMGKMTNCNGAGQCGTCVVKVTSPSWGL--RSEYEADKILKGRKFGES-EEYRLACQTTVERGEATVVVRP 176
            + A  G+NLR     + ID+Y  +GKMTNC G GQCGTC+V++      L  R++ E       RKF +  E YRLACQT V  G  +VV +P
Sbjct:   13 VVAADGANLRLKAMQNDIDIYTFIGKMTNCGGNGQCGTCIVEIVEGLENLSPRTDVE------NRKFKKKPENYRLACQTLV-NGSVSVVTKP 98          
The following BLAST results are available for this feature:
BLAST of EWM26017.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107932|gb|EWM26017.1|6.929e-129100.00ferredoxin [Nannochloropsis gaditana][more]
gi|553185802|ref|XP_005854309.1|5.584e-8092.31hypothetical protein NGA_0190300 [Nannochloropsis ... [more]
gi|299470431|emb|CBN80192.1|1.236e-2559.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|938300546|gb|KPQ34106.1|7.003e-1648.422Fe-2S ferredoxin [Phormidesmis priestleyi Ana][more]
gi|505029192|ref|WP_015216294.1|5.517e-1546.24ferredoxin [Anabaena cylindrica] >gi|428680912|gb|... [more]
gi|748153534|ref|WP_039727861.1|2.002e-1447.31iron ABC transporter substrate-binding protein [Ly... [more]
gi|1121331620|ref|WP_073639519.1|2.393e-1444.57iron ABC transporter substrate-binding protein [No... [more]
gi|750617793|ref|WP_040899661.1|3.043e-1445.65iron ABC transporter substrate-binding protein [Xe... [more]
gi|442790976|gb|ELS00477.1|3.177e-1445.65ferredoxin [Xenococcus sp. PCC 7305][more]
gi|501375522|ref|WP_012407088.1|6.201e-1444.09iron ABC transporter substrate-binding protein [No... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4669rna4669Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications