EWM26025.1, cds4645 (CDS) Nannochloropsis gaditana

Overview
NameEWM26025.1
Unique Namecds4645
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1158140..1158574 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26025.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100629g3.2829.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1158140..1158574 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR021660DUF3253
Homology
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|585107942|gb|EWM26025.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 282.337 bits (721), Expect = 3.199e-96
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144
            MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS
Sbjct:    1 MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|519007757|ref|WP_020163632.1| (hypothetical protein [Methyloversatilis discipulorum])

HSP 1 Score: 81.6481 bits (200), Expect = 1.591e-17
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   37 TDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRL 115
            +D +++  +LAL  RR P  +ICPSEV R L P +WR  MP+VR VA RLA EG + +TQRG+V   + E   RGPIR+
Sbjct:   12 SDERVAEALLALVARRAPGYSICPSEVARALSPDDWRPLMPKVRDVARRLAGEGRVLVTQRGEVRDADTE--WRGPIRI 88          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|502449496|ref|WP_012790558.1| (DUF3253 domain-containing protein [Chitinophaga pinensis] >gi|256036838|gb|ACU60382.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588])

HSP 1 Score: 80.4925 bits (197), Expect = 3.320e-17
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 0
Query:   38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
            +S IS  I++  T+RGP ++ CPSE+ R+L   NWR YM +VR VAI L K+GLI ITQ+G  V +    D +GPIR++
Sbjct:    4 NSIISKQIISTVTQRGPDKSTCPSEIARMLFADNWRDYMQQVRDVAIDLQKKGLIIITQKGLPVDI---NDFKGPIRIK 79          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1113351247|gb|OJW15006.1| (hypothetical protein BGO48_12650 [Mucilaginibacter sp. 44-25])

HSP 1 Score: 79.7221 bits (195), Expect = 5.409e-17
Identity = 33/82 (40.24%), Postives = 57/82 (69.51%), Query Frame = 0
Query:   38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTIS 119
            ++ I  TIL+++ +R P +T+CPSE+ R + P +WR +M  VRA A+ L + G ++ITQ+G+ V V    +I+GP+R++ I+
Sbjct:    3 NNVIKETILSMSAQRAPDKTVCPSEIARAMFPQDWRKHMKEVRAAAVELQQAGKVEITQKGEPVDV---NNIKGPVRIKFIA 81          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1152500496|ref|WP_078349668.1| (DUF3253 domain-containing protein [Mucilaginibacter pedocola] >gi|1151350247|gb|OOQ57944.1| hypothetical protein BC343_09710 [Mucilaginibacter pedocola])

HSP 1 Score: 77.7962 bits (190), Expect = 3.180e-16
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:   41 ISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
            I  TILA  T+RGP ++ CPSE+ R L P+NWR +M  VR  A+ L K G + ITQ+GQ V V+   +I+GPIR++
Sbjct:    4 IPQTILAKATQRGPDKSTCPSEIARELFPANWRKHMQEVRDAAVDLHKTGKVIITQKGQPVDVD---NIKGPIRIK 76          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|640721812|ref|WP_025144913.1| (DUF3253 domain-containing protein [Pedobacter jeongneungensis])

HSP 1 Score: 77.411 bits (189), Expect = 5.376e-16
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   39 SQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTI 118
              I+STIL+   +RGP +T CPSE+ R+L P +WR +M  VR VAI L K+G + +TQ+G  V V+    I+GP+R++ I
Sbjct:    5 KNIASTILSTAIQRGPEKTTCPSEIARMLFPGDWRNHMKEVRDVAIDLHKQGKVVMTQKGIPVDVDH---IKGPVRIKII 81          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|502414101|ref|WP_012779712.1| (hypothetical protein [Dyadobacter fermentans] >gi|254946664|gb|ACT91364.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053])

HSP 1 Score: 76.2554 bits (186), Expect = 1.110e-15
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
            D +I++TIL+    RG  ++ CPSE+ R+L P +WR +M  V AVAI L  EG + ITQ+G  V VE   +I+GP+R++
Sbjct:    4 DEKIANTILSTAIHRGSQKSTCPSEIARMLFPDDWREHMKDVLAVAIDLHHEGSVVITQKGTPVDVE---NIKGPVRIK 79          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|825129939|ref|WP_047126394.1| (DUF3253 domain-containing protein [Xanthomonas arboricola] >gi|1039639420|gb|OBR75538.1| hypothetical protein A7D01_10675 [Xanthomonas arboricola])

HSP 1 Score: 76.6406 bits (187), Expect = 1.191e-15
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 0
Query:   38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSN--WRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
            D QI +TI AL TRR P ++ICPSEV R L      WRA MP++R+VA  LA   ++ ITQRG+VV V     +RGP+RLR
Sbjct:    6 DGQIVATIRALLTRRLPEQSICPSEVARALSDDEMRWRALMPQIRSVAADLAGSDVVQITQRGEVVDVRT---VRGPVRLR 83          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1178417196|ref|WP_082939780.1| (DUF3253 domain-containing protein [Mycobacterium sp. 852014-50255_SCH5639931])

HSP 1 Score: 77.0258 bits (188), Expect = 1.220e-15
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   23 PSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISD 120
            P +     +    P   ++ S+I AL   RGP  +ICPS+  R +   NWR  MP  R VA +LA+ G ++ITQRG    V+ EGD  GPIR+RT +D
Sbjct:   18 PGADHAEIALGDGPIRRRLESSIRALAEHRGPRSSICPSDAARAVGGENWRELMPDARDVARQLARSGDVEITQRG--TAVDPEGDWTGPIRIRTTAD 113          
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1175503582|ref|WP_082046230.1| (DUF3253 domain-containing protein [Arthrobacter sp. L77])

HSP 1 Score: 77.0258 bits (188), Expect = 1.342e-15
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   37 TDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144
            TD ++ + IL +  +RG  +T+CPSE  R +    WR  MP  R +A  LA EGL+ +TQ G+ V      D RGPIR+R I  G   T    ++ ++  A  EA SS
Sbjct:    6 TDPELRAEILRIAAQRGSGKTLCPSEAARGIGGDRWRDLMPAARRIAFDLAGEGLVHVTQHGEPVAP----DARGPIRIRWIDGGAATTDDIGAATTNDGASGEAPSS 109          
The following BLAST results are available for this feature:
BLAST of EWM26025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107942|gb|EWM26025.1|3.199e-96100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|519007757|ref|WP_020163632.1|1.591e-1750.63hypothetical protein [Methyloversatilis discipulor... [more]
gi|502449496|ref|WP_012790558.1|3.320e-1749.37DUF3253 domain-containing protein [Chitinophaga pi... [more]
gi|1113351247|gb|OJW15006.1|5.409e-1740.24hypothetical protein BGO48_12650 [Mucilaginibacter... [more]
gi|1152500496|ref|WP_078349668.1|3.180e-1650.00DUF3253 domain-containing protein [Mucilaginibacte... [more]
gi|640721812|ref|WP_025144913.1|5.376e-1646.25DUF3253 domain-containing protein [Pedobacter jeon... [more]
gi|502414101|ref|WP_012779712.1|1.110e-1545.57hypothetical protein [Dyadobacter fermentans] >gi|... [more]
gi|825129939|ref|WP_047126394.1|1.191e-1553.09DUF3253 domain-containing protein [Xanthomonas arb... [more]
gi|1178417196|ref|WP_082939780.1|1.220e-1541.84DUF3253 domain-containing protein [Mycobacterium s... [more]
gi|1175503582|ref|WP_082046230.1|1.342e-1538.89DUF3253 domain-containing protein [Arthrobacter sp... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4657rna4657Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications