EWM26025.1, cds4645 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|585107942|gb|EWM26025.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 282.337 bits (721), Expect = 3.199e-96 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 1 MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144
MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS
Sbjct: 1 MRKAKPGMTPKVPTSSSYIASRPSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|519007757|ref|WP_020163632.1| (hypothetical protein [Methyloversatilis discipulorum]) HSP 1 Score: 81.6481 bits (200), Expect = 1.591e-17 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 0
Query: 37 TDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRL 115
+D +++ +LAL RR P +ICPSEV R L P +WR MP+VR VA RLA EG + +TQRG+V + E RGPIR+
Sbjct: 12 SDERVAEALLALVARRAPGYSICPSEVARALSPDDWRPLMPKVRDVARRLAGEGRVLVTQRGEVRDADTE--WRGPIRI 88
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|502449496|ref|WP_012790558.1| (DUF3253 domain-containing protein [Chitinophaga pinensis] >gi|256036838|gb|ACU60382.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]) HSP 1 Score: 80.4925 bits (197), Expect = 3.320e-17 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 0
Query: 38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
+S IS I++ T+RGP ++ CPSE+ R+L NWR YM +VR VAI L K+GLI ITQ+G V + D +GPIR++
Sbjct: 4 NSIISKQIISTVTQRGPDKSTCPSEIARMLFADNWRDYMQQVRDVAIDLQKKGLIIITQKGLPVDI---NDFKGPIRIK 79
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1113351247|gb|OJW15006.1| (hypothetical protein BGO48_12650 [Mucilaginibacter sp. 44-25]) HSP 1 Score: 79.7221 bits (195), Expect = 5.409e-17 Identity = 33/82 (40.24%), Postives = 57/82 (69.51%), Query Frame = 0
Query: 38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTIS 119
++ I TIL+++ +R P +T+CPSE+ R + P +WR +M VRA A+ L + G ++ITQ+G+ V V +I+GP+R++ I+
Sbjct: 3 NNVIKETILSMSAQRAPDKTVCPSEIARAMFPQDWRKHMKEVRAAAVELQQAGKVEITQKGEPVDV---NNIKGPVRIKFIA 81
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1152500496|ref|WP_078349668.1| (DUF3253 domain-containing protein [Mucilaginibacter pedocola] >gi|1151350247|gb|OOQ57944.1| hypothetical protein BC343_09710 [Mucilaginibacter pedocola]) HSP 1 Score: 77.7962 bits (190), Expect = 3.180e-16 Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query: 41 ISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
I TILA T+RGP ++ CPSE+ R L P+NWR +M VR A+ L K G + ITQ+GQ V V+ +I+GPIR++
Sbjct: 4 IPQTILAKATQRGPDKSTCPSEIARELFPANWRKHMQEVRDAAVDLHKTGKVIITQKGQPVDVD---NIKGPIRIK 76
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|640721812|ref|WP_025144913.1| (DUF3253 domain-containing protein [Pedobacter jeongneungensis]) HSP 1 Score: 77.411 bits (189), Expect = 5.376e-16 Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 39 SQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTI 118
I+STIL+ +RGP +T CPSE+ R+L P +WR +M VR VAI L K+G + +TQ+G V V+ I+GP+R++ I
Sbjct: 5 KNIASTILSTAIQRGPEKTTCPSEIARMLFPGDWRNHMKEVRDVAIDLHKQGKVVMTQKGIPVDVDH---IKGPVRIKII 81
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|502414101|ref|WP_012779712.1| (hypothetical protein [Dyadobacter fermentans] >gi|254946664|gb|ACT91364.1| conserved hypothetical protein [Dyadobacter fermentans DSM 18053]) HSP 1 Score: 76.2554 bits (186), Expect = 1.110e-15 Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0
Query: 38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
D +I++TIL+ RG ++ CPSE+ R+L P +WR +M V AVAI L EG + ITQ+G V VE +I+GP+R++
Sbjct: 4 DEKIANTILSTAIHRGSQKSTCPSEIARMLFPDDWREHMKDVLAVAIDLHHEGSVVITQKGTPVDVE---NIKGPVRIK 79
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|825129939|ref|WP_047126394.1| (DUF3253 domain-containing protein [Xanthomonas arboricola] >gi|1039639420|gb|OBR75538.1| hypothetical protein A7D01_10675 [Xanthomonas arboricola]) HSP 1 Score: 76.6406 bits (187), Expect = 1.191e-15 Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 0
Query: 38 DSQISSTILALTTRRGPCRTICPSEVPRVLCPSN--WRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLR 116
D QI +TI AL TRR P ++ICPSEV R L WRA MP++R+VA LA ++ ITQRG+VV V +RGP+RLR
Sbjct: 6 DGQIVATIRALLTRRLPEQSICPSEVARALSDDEMRWRALMPQIRSVAADLAGSDVVQITQRGEVVDVRT---VRGPVRLR 83
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1178417196|ref|WP_082939780.1| (DUF3253 domain-containing protein [Mycobacterium sp. 852014-50255_SCH5639931]) HSP 1 Score: 77.0258 bits (188), Expect = 1.220e-15 Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 23 PSSTVTSSSSASPPTDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISD 120
P + + P ++ S+I AL RGP +ICPS+ R + NWR MP R VA +LA+ G ++ITQRG V+ EGD GPIR+RT +D
Sbjct: 18 PGADHAEIALGDGPIRRRLESSIRALAEHRGPRSSICPSDAARAVGGENWRELMPDARDVARQLARSGDVEITQRG--TAVDPEGDWTGPIRIRTTAD 113
BLAST of EWM26025.1 vs. NCBI_GenBank
Match: gi|1175503582|ref|WP_082046230.1| (DUF3253 domain-containing protein [Arthrobacter sp. L77]) HSP 1 Score: 77.0258 bits (188), Expect = 1.342e-15 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 37 TDSQISSTILALTTRRGPCRTICPSEVPRVLCPSNWRAYMPRVRAVAIRLAKEGLIDITQRGQVVTVEKEGDIRGPIRLRTISDGNVCTQSQTSSKSSPAAGPEAVSS 144
TD ++ + IL + +RG +T+CPSE R + WR MP R +A LA EGL+ +TQ G+ V D RGPIR+R I G T ++ ++ A EA SS
Sbjct: 6 TDPELRAEILRIAAQRGSGKTLCPSEAARGIGGDRWRDLMPAARRIAFDLAGEGLVHVTQHGEPVAP----DARGPIRIRWIDGGAATTDDIGAATTNDGASGEAPSS 109 The following BLAST results are available for this feature:
BLAST of EWM26025.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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