EWM26041.1, cds4632 (CDS) Nannochloropsis gaditana

Overview
NameEWM26041.1
Unique Namecds4632
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1131712..1131867 +
Alignment locationCM002463.1:1132034..1132099 +
Alignment locationCM002463.1:1132364..1132435 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26041.1
Productpre-mrna-processing-splicing factor
Orig transcript idgnl|cribi|Naga_102481g1.5538.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1131712..1131867 +
CM002463.1supercontigCM002463.1:1132034..1132099 +
CM002463.1supercontigCM002463.1:1132364..1132435 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005681spliceosomal complex
Vocabulary: INTERPRO
TermDefinition
IPR027652PRP8
IPR012592PROCN
Homology
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|585107975|gb|EWM26041.1| (pre-mrna-processing-splicing factor [Nannochloropsis gaditana])

HSP 1 Score: 199.519 bits (506), Expect = 8.186e-65
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MVAHGVSVFHLPLSPSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQALIPSSHPFSPLLWPFLISGTTT 97
            MVAHGVSVFHLPLSPSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQALIPSSHPFSPLLWPFLISGTTT
Sbjct:    1 MVAHGVSVFHLPLSPSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQALIPSSHPFSPLLWPFLISGTTT 97
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|957849652|ref|XP_014675363.1| (PREDICTED: pre-mRNA-processing-splicing factor 8-like [Priapulus caudatus])

HSP 1 Score: 95.9005 bits (237), Expect = 1.295e-23
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  +VK KADWWT+ AHYNRERI+RGATVDKTVCKKNLGRLTRL+LKAEQ
Sbjct:   40 PGLPTPIENMILRFVKSKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQ 99
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|953495947|emb|CEG42843.1| (pre-mrna-processing-splicing factor 8 [Plasmopara halstedii])

HSP 1 Score: 102.834 bits (255), Expect = 1.813e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  750 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 809
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|813178310|ref|XP_012205624.1| (pre-mRNA-processing-splicing factor 8 [Saprolegnia parasitica CBS 223.65] >gi|641529470|gb|KDO23641.1| pre-mRNA-processing-splicing factor 8 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.449 bits (254), Expect = 2.879e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  770 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 829
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|669161992|ref|XP_008616558.1| (pre-mRNA-processing-splicing factor 8 [Saprolegnia diclina VS20] >gi|530731749|gb|EQC29991.1| pre-mRNA-processing-splicing factor 8 [Saprolegnia diclina VS20])

HSP 1 Score: 102.064 bits (253), Expect = 3.203e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  768 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 827
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|1214709206|gb|OWZ20408.1| (Pre-mRNA-processing-splicing factor 8 [Phytophthora megakarya])

HSP 1 Score: 102.064 bits (253), Expect = 3.296e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  684 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 743
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|1173956336|gb|OQS03145.1| (pre-mRNA-processing-splicing factor 8 [Thraustotheca clavata])

HSP 1 Score: 102.064 bits (253), Expect = 3.395e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  754 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 813
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|1173949150|gb|OQR97218.1| (pre-mRNA-processing-splicing factor 8 [Achlya hypogyna])

HSP 1 Score: 102.064 bits (253), Expect = 3.462e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  756 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 815
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|698804684|ref|XP_009835371.1| (pre-mRNA-processing-splicing factor 8 [Aphanomyces astaci] >gi|574109821|gb|ETV75323.1| pre-mRNA-processing-splicing factor 8 [Aphanomyces astaci])

HSP 1 Score: 102.064 bits (253), Expect = 3.497e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  782 PGLPSPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 841
[Close]
BLAST of EWM26041.1 vs. NCBI_GenBank
Match: gi|970658076|gb|KUF95884.1| (HIV Tat-specific factor 1 [Phytophthora nicotianae])

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-23
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0 
Query:   15 PSLPPSLPPFLSSYVKQKADWWTDHAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 74
            P LP  +   +  YVK KADWWT+ AHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ
Sbjct:  379 PGLPAPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQ 438
The following BLAST results are available for this feature:
BLAST of EWM26041.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107975|gb|EWM26041.1|8.186e-65100.00pre-mrna-processing-splicing factor [Nannochlorops... [more]
gi|957849652|ref|XP_014675363.1|1.295e-2373.33PREDICTED: pre-mRNA-processing-splicing factor 8-l... [more]
gi|953495947|emb|CEG42843.1|1.813e-2378.33pre-mrna-processing-splicing factor 8 [Plasmopara ... [more]
gi|813178310|ref|XP_012205624.1|2.879e-2378.33pre-mRNA-processing-splicing factor 8 [Saprolegnia... [more]
gi|669161992|ref|XP_008616558.1|3.203e-2378.33pre-mRNA-processing-splicing factor 8 [Saprolegnia... [more]
gi|1214709206|gb|OWZ20408.1|3.296e-2378.33Pre-mRNA-processing-splicing factor 8 [Phytophthor... [more]
gi|1173956336|gb|OQS03145.1|3.395e-2378.33pre-mRNA-processing-splicing factor 8 [Thraustothe... [more]
gi|1173949150|gb|OQR97218.1|3.462e-2378.33pre-mRNA-processing-splicing factor 8 [Achlya hypo... [more]
gi|698804684|ref|XP_009835371.1|3.497e-2378.33pre-mRNA-processing-splicing factor 8 [Aphanomyces... [more]
gi|970658076|gb|KUF95884.1|3.518e-2378.33HIV Tat-specific factor 1 [Phytophthora nicotianae... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4644rna4644Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications