EWM26058.1, cds4615 (CDS) Nannochloropsis gaditana

Overview
NameEWM26058.1
Unique Namecds4615
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1096173..1096391 +
Alignment locationCM002463.1:1096620..1096685 +
Alignment locationCM002463.1:1096975..1097063 +

Link to JBrowse

Properties
Property NameValue
End range.
End range1097063
Protein idEWM26058.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101254g1.5800.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1096173..1096391 +
CM002463.1supercontigCM002463.1:1096620..1096685 +
CM002463.1supercontigCM002463.1:1096975..1097063 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM26058.1 vs. NCBI_GenBank
Match: gi|585108014|gb|EWM26058.1| (hypothetical protein Naga_101254g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 250.366 bits (638), Expect = 4.645e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 
Query:    1 MHGFHRRKLPLAISHAFFTHDPTSQVMRTAQRTAFGHVFASVIGMAALLASTTLLAFPKSVTAFAVPAGAWGMRLAPAPVAVSATYVRRMGSMAMVAPETVVQDVIKKPAVIFRWEGREGVGREG 125
            MHGFHRRKLPLAISHAFFTHDPTSQVMRTAQRTAFGHVFASVIGMAALLASTTLLAFPKSVTAFAVPAGAWGMRLAPAPVAVSATYVRRMGSMAMVAPETVVQDVIKKPAVIFRWEGREGVGREG
Sbjct:    1 MHGFHRRKLPLAISHAFFTHDPTSQVMRTAQRTAFGHVFASVIGMAALLASTTLLAFPKSVTAFAVPAGAWGMRLAPAPVAVSATYVRRMGSMAMVAPETVVQDVIKKPAVIFRWEGREGVGREG 125
The following BLAST results are available for this feature:
BLAST of EWM26058.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108014|gb|EWM26058.1|4.645e-84100.00hypothetical protein Naga_101254g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4627rna4627Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications