EWM26076.1, cds4602 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|585108064|gb|EWM26076.1| (Ribosomal protein L7/L12 [Nannochloropsis gaditana]) HSP 1 Score: 228.024 bits (580), Expect = 2.523e-75 Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123
MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV
Sbjct: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|325182047|emb|CCA16500.1| (50S ribosomal protein L7/L12 putative [Albugo laibachii Nc14]) HSP 1 Score: 114.005 bits (284), Expect = 1.502e-29 Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0
Query: 2 LELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVG 117
LE+ +L ++ RLG+SD A G D A EEK+EEK FDVKL SF+ KSKIKVIKE+RT++GLGLKEAKELVEGAP V+KK+V KEEAE++L KL++ G
Sbjct: 71 LEIAELSWAIQDRLGISDDAF---------AMGSGDSEMQTDAPAEEKKEEKTTFDVKLASFDAKSKIKVIKEIRTLTGLGLKEAKELVEGAPSVVKKNVTKEEAESILAKLKECG 177
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|565446303|ref|XP_006284619.1| (hypothetical protein CARUB_v10005850mg [Capsella rubella] >gi|482553324|gb|EOA17517.1| hypothetical protein CARUB_v10005850mg [Capsella rubella]) HSP 1 Score: 111.694 bits (278), Expect = 1.043e-28 Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
+LE L +VL+ +LG+S+ + +M PG+G G +AAGA E+K+E K AFDV L ++E SKIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct: 57 LLETMDLNEVLRQKLGVSEMPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYETASKIKVIKEVRTITDLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|953497838|emb|CEG40598.1| (ribosomal protein l7 l12 [Plasmopara halstedii]) HSP 1 Score: 110.153 bits (274), Expect = 4.335e-28 Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
M+E+ +L ++ + G+S++ A G G G A AA+E K EEK AFDVKL SF+ KSKIKVIKEVR I+GLGLKEAKELVEGAP +KKDVKKEEA+ L++KL+ VGA VEL
Sbjct: 61 MIEIAELSHAIQAKFGISES--------AFQVGMGGGGTGAVSAAQEVK-EEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVEL 173
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|727547520|ref|XP_010446795.1| (PREDICTED: uncharacterized protein LOC104729543 [Camelina sativa]) HSP 1 Score: 107.842 bits (268), Expect = 4.168e-27 Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
+LE L ++L+ +L +S+ + +M PG+G G +AAGA E+K+E K AFDV L ++E KIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct: 57 LLETMDLTEILRQKLDVSEVPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYETAGKIKVIKEVRTITSLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|325192001|emb|CCA26468.1| (mitochondrial inner membrane protease ATP23 putativ [Albugo laibachii Nc14]) HSP 1 Score: 111.694 bits (278), Expect = 7.878e-27 Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
MLE+ +L + ++ + L + L G GAA + K+E K AFDVKLVSF+ K KIKVIKEVR+I+GLGLKEAKELVEGAP VIKKDVKKEEAE L+ KL ++GA
Sbjct: 61 MLEIAELSRAVQKQFDLPEPTLGMGGGSNTGG-------NTEGAATQAKEEVKTAFDVKLVSFDAKMKIKVIKEVRSITGLGLKEAKELVEGAPNVIKKDVKKEEAEVLIAKLSELGA 171
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|727522709|ref|XP_010437351.1| (PREDICTED: uncharacterized protein LOC104721131 [Camelina sativa]) HSP 1 Score: 106.686 bits (265), Expect = 8.998e-27 Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
+LE L ++L+ +L +S+ + +M PG+G G +AAGA E+K+E K AFDV L ++E KIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct: 57 LLETMDLTEILRQKLDVSEMPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYEAAGKIKVIKEVRTITSLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635362272|emb|CCI48976.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 104.76 bits (260), Expect = 1.134e-26 Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
MLE+ +L + ++ + L + L + GA+ + K+E K AFDVKLVSF+ K KIKVIKE+R I+GLGLKEAKELVEGAP VIKKDVKK+EAE L+ KL ++GA
Sbjct: 1 MLEIAELSRAVQKQFDLPEPTLGMGGGSSASGN-------TEGASTQAKEETKTAFDVKLVSFDAKMKIKVIKEIRAITGLGLKEAKELVEGAPNVIKKDVKKDEAEELIAKLSELGA 111
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635362271|emb|CCI48975.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 105.145 bits (261), Expect = 3.246e-26 Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0
Query: 1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
MLE+ +L + ++ + L + L + GA+ + K+E K AFDVKLVSF+ K KIKVIKE+R I+GLGLKEAKELVEGAP VIKKDVKK+EAE L+ KL ++GA
Sbjct: 61 MLEIAELSRAVQKQFDLPEPTLGMGGGSSASGN-------TEGASTQAKEETKTAFDVKLVSFDAKMKIKVIKEIRAITGLGLKEAKELVEGAPNVIKKDVKKDEAEELIAKLSELGA 171
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635370624|emb|CCI41215.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 105.145 bits (261), Expect = 3.849e-26 Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 0
Query: 2 LELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
LE+ +L ++ RLG+SD VM G D + A EE++EEK +FDVKL SF+ KSKIKVIKE+RT++GLGLKEAKELVEGAP V+KK+V KEEAE++L KL++ GA
Sbjct: 71 LEIAELSWAIQDRLGISDD---AFVM------GNGDSEMQSDAPTEEEEEEKTSFDVKLASFDPKSKIKVIKEIRTLTGLGLKEAKELVEGAPSVVKKNVTKEEAESILLKLKECGA 178 The following BLAST results are available for this feature:
BLAST of EWM26076.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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