EWM26076.1, cds4602 (CDS) Nannochloropsis gaditana

Overview
NameEWM26076.1
Unique Namecds4602
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1052613..1052648 -
Alignment locationCM002463.1:1052206..1052391 -
Alignment locationCM002463.1:1051908..1051970 -
Alignment locationCM002463.1:1051652..1051738 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26076.1
ProductRibosomal protein L7/L12
Orig transcript idgnl|cribi|Naga_100278g1.6827.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1052613..1052648 -
CM002463.1supercontigCM002463.1:1052206..1052391 -
CM002463.1supercontigCM002463.1:1051908..1051970 -
CM002463.1supercontigCM002463.1:1051652..1051738 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR000206Ribosomal_L7/12
Homology
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|585108064|gb|EWM26076.1| (Ribosomal protein L7/L12 [Nannochloropsis gaditana])

HSP 1 Score: 228.024 bits (580), Expect = 2.523e-75
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123
            MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV
Sbjct:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVELV 123          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|325182047|emb|CCA16500.1| (50S ribosomal protein L7/L12 putative [Albugo laibachii Nc14])

HSP 1 Score: 114.005 bits (284), Expect = 1.502e-29
Identity = 64/116 (55.17%), Postives = 80/116 (68.97%), Query Frame = 0
Query:    2 LELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVG 117
            LE+ +L   ++ RLG+SD            A G  D      A  EEK+EEK  FDVKL SF+ KSKIKVIKE+RT++GLGLKEAKELVEGAP V+KK+V KEEAE++L KL++ G
Sbjct:   71 LEIAELSWAIQDRLGISDDAF---------AMGSGDSEMQTDAPAEEKKEEKTTFDVKLASFDAKSKIKVIKEIRTLTGLGLKEAKELVEGAPSVVKKNVTKEEAESILAKLKECG 177          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|565446303|ref|XP_006284619.1| (hypothetical protein CARUB_v10005850mg [Capsella rubella] >gi|482553324|gb|EOA17517.1| hypothetical protein CARUB_v10005850mg [Capsella rubella])

HSP 1 Score: 111.694 bits (278), Expect = 1.043e-28
Identity = 66/125 (52.80%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
            +LE   L +VL+ +LG+S+  +   +M     PG+G G    +AAGA  E+K+E K AFDV L ++E  SKIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct:   57 LLETMDLNEVLRQKLGVSEMPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYETASKIKVIKEVRTITDLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|953497838|emb|CEG40598.1| (ribosomal protein l7 l12 [Plasmopara halstedii])

HSP 1 Score: 110.153 bits (274), Expect = 4.335e-28
Identity = 70/122 (57.38%), Postives = 87/122 (71.31%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
            M+E+ +L   ++ + G+S++        A   G G  G  A  AA+E K EEK AFDVKL SF+ KSKIKVIKEVR I+GLGLKEAKELVEGAP  +KKDVKKEEA+ L++KL+ VGA VEL
Sbjct:   61 MIEIAELSHAIQAKFGISES--------AFQVGMGGGGTGAVSAAQEVK-EEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVEL 173          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|727547520|ref|XP_010446795.1| (PREDICTED: uncharacterized protein LOC104729543 [Camelina sativa])

HSP 1 Score: 107.842 bits (268), Expect = 4.168e-27
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
            +LE   L ++L+ +L +S+  +   +M     PG+G G    +AAGA  E+K+E K AFDV L ++E   KIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct:   57 LLETMDLTEILRQKLDVSEVPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYETAGKIKVIKEVRTITSLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|325192001|emb|CCA26468.1| (mitochondrial inner membrane protease ATP23 putativ [Albugo laibachii Nc14])

HSP 1 Score: 111.694 bits (278), Expect = 7.878e-27
Identity = 65/118 (55.08%), Postives = 80/118 (67.80%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
            MLE+ +L + ++ +  L +  L        G           GAA + K+E K AFDVKLVSF+ K KIKVIKEVR+I+GLGLKEAKELVEGAP VIKKDVKKEEAE L+ KL ++GA
Sbjct:   61 MLEIAELSRAVQKQFDLPEPTLGMGGGSNTGG-------NTEGAATQAKEEVKTAFDVKLVSFDAKMKIKVIKEVRSITGLGLKEAKELVEGAPNVIKKDVKKEEAEVLIAKLSELGA 171          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|727522709|ref|XP_010437351.1| (PREDICTED: uncharacterized protein LOC104721131 [Camelina sativa])

HSP 1 Score: 106.686 bits (265), Expect = 8.998e-27
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVA---PGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGAKVEL 122
            +LE   L ++L+ +L +S+  +   +M     PG+G G    +AAGA  E+K+E K AFDV L ++E   KIKVIKEVRTI+ LGLKEAK+LVE AP ++KK V KEEAE +++KL+ VGAKV +
Sbjct:   57 LLETMDLTEILRQKLDVSEMPVMAAMMPGMSLPGSGAGKS--SAAGAGTEKKKEAKTAFDVMLQAYEAAGKIKVIKEVRTITSLGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 179          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635362272|emb|CCI48976.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 104.76 bits (260), Expect = 1.134e-26
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
            MLE+ +L + ++ +  L +  L      +             GA+ + K+E K AFDVKLVSF+ K KIKVIKE+R I+GLGLKEAKELVEGAP VIKKDVKK+EAE L+ KL ++GA
Sbjct:    1 MLEIAELSRAVQKQFDLPEPTLGMGGGSSASGN-------TEGASTQAKEETKTAFDVKLVSFDAKMKIKVIKEIRAITGLGLKEAKELVEGAPNVIKKDVKKDEAEELIAKLSELGA 111          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635362271|emb|CCI48975.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.145 bits (261), Expect = 3.246e-26
Identity = 61/118 (51.69%), Postives = 79/118 (66.95%), Query Frame = 0
Query:    1 MLELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
            MLE+ +L + ++ +  L +  L      +             GA+ + K+E K AFDVKLVSF+ K KIKVIKE+R I+GLGLKEAKELVEGAP VIKKDVKK+EAE L+ KL ++GA
Sbjct:   61 MLEIAELSRAVQKQFDLPEPTLGMGGGSSASGN-------TEGASTQAKEETKTAFDVKLVSFDAKMKIKVIKEIRAITGLGLKEAKELVEGAPNVIKKDVKKDEAEELIAKLSELGA 171          
BLAST of EWM26076.1 vs. NCBI_GenBank
Match: gi|635370624|emb|CCI41215.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.145 bits (261), Expect = 3.849e-26
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 0
Query:    2 LELGQLLKVLKHRLGLSDADLRGTVMVAPGAGGGSDGGAAAGAAEEEKQEEKDAFDVKLVSFEDKSKIKVIKEVRTISGLGLKEAKELVEGAPKVIKKDVKKEEAEALLKKLQDVGA 118
            LE+ +L   ++ RLG+SD      VM      G  D    + A  EE++EEK +FDVKL SF+ KSKIKVIKE+RT++GLGLKEAKELVEGAP V+KK+V KEEAE++L KL++ GA
Sbjct:   71 LEIAELSWAIQDRLGISDD---AFVM------GNGDSEMQSDAPTEEEEEEKTSFDVKLASFDPKSKIKVIKEIRTLTGLGLKEAKELVEGAPSVVKKNVTKEEAESILLKLKECGA 178          
The following BLAST results are available for this feature:
BLAST of EWM26076.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108064|gb|EWM26076.1|2.523e-75100.00Ribosomal protein L7/L12 [Nannochloropsis gaditana... [more]
gi|325182047|emb|CCA16500.1|1.502e-2955.1750S ribosomal protein L7/L12 putative [Albugo laib... [more]
gi|565446303|ref|XP_006284619.1|1.043e-2852.80hypothetical protein CARUB_v10005850mg [Capsella r... [more]
gi|953497838|emb|CEG40598.1|4.335e-2857.38ribosomal protein l7 l12 [Plasmopara halstedii][more]
gi|727547520|ref|XP_010446795.1|4.168e-2750.40PREDICTED: uncharacterized protein LOC104729543 [C... [more]
gi|325192001|emb|CCA26468.1|7.878e-2755.08mitochondrial inner membrane protease ATP23 putati... [more]
gi|727522709|ref|XP_010437351.1|8.998e-2750.40PREDICTED: uncharacterized protein LOC104721131 [C... [more]
gi|635362272|emb|CCI48976.1|1.134e-2651.69unnamed protein product [Albugo candida][more]
gi|635362271|emb|CCI48975.1|3.246e-2651.69unnamed protein product [Albugo candida][more]
gi|635370624|emb|CCI41215.1|3.849e-2655.56unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4614rna4614Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications