EWM26090.1, cds4536 (CDS) Nannochloropsis gaditana

Overview
NameEWM26090.1
Unique Namecds4536
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:889155..889194 +
Alignment locationCM002463.1:889323..890620 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26090.1
Productelongator complex protein 4
Orig transcript idgnl|cribi|Naga_100014g26.9267.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:889155..889194 +
CM002463.1supercontigCM002463.1:889323..890620 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR008728Elongator_complex_protein_4
IPR027417P-loop_NTPase
Homology
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|585108084|gb|EWM26090.1| (elongator complex protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 908.286 bits (2346), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MIKTSRARLLNTRGPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRGRRRKEERGGDRGERGKPAV 445
            MIKTSRARLLNTRGPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRGRRRKEERGGDRGERGKPAV
Sbjct:    1 MIKTSRARLLNTRGPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRGRRRKEERGGDRGERGKPAV 445          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|553196471|ref|XP_005856352.1| (elongator complex protein 4, partial [Nannochloropsis gaditana CCMP526] >gi|422292706|gb|EKU20008.1| elongator complex protein 4, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 296.975 bits (759), Expect = 2.828e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:   14 GPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRP 155
            GPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRP
Sbjct:    2 GPYRMASLSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRP 143          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|698775892|ref|XP_009820990.1| (hypothetical protein H257_00142 [Aphanomyces astaci] >gi|574123115|gb|ETV88590.1| hypothetical protein H257_00142 [Aphanomyces astaci])

HSP 1 Score: 147.902 bits (372), Expect = 6.659e-37
Identity = 129/413 (31.23%), Postives = 193/413 (46.73%), Query Frame = 0
Query:   21 LSSFRRIDRPVTTSVPKQYDISSSIPTVPPRAP--GTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGA-WASA-----HEGEPLLLLHSLRRLI-RHHPVAI-FVTLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQ 423
            +SSFRR    + ++ P     +SS  + P R    G KP+IN  TL SSG R+LD+V+GGG  LG++ +VE   F      L++YF A+G++  H   V+  + S        V  LP +L+  + Q        +     +  S+A P                        PL+IAWQY KY     P      +     + FC+S+DLS+            P+V  +        + SS  +  Y+S+ + ++   E++    V++  LT  GA W S      H+ + L+ + ++R L+ RH   AI  +T+ A  +P    R +  +AD V EL SFAG       E   F G L +  + HL+A+      + KLGVKRDRRKL +EPLHLPPEG R+   D   Q
Sbjct:    1 MSSFRRA-VGLDSAAPHVPSTTSS--STPARGVSRGVKPFINDQTLTSSGLRELDAVVGGGYLLGSIVVVESSVFGSFGSDLARYFAAEGLANEH---VVYTDAS-------VVASLPLELSTAQKQL-------KAALVVAQTSAAAP------------------------PLTIAWQYEKYAAETLP-----HNVKVTDNRFCHSFDLSK------------PMVDAMKRTCHVLLDSSSTLA--YRSIFATMQQALEHS--DDVVRFVLTDVGAPWISGDMTSEHQSQLLIFVRAVRGLLARHRRRAICMLTVPAFTLPTPLVRSIRHLADYVFELSSFAGQSDHLPSELADFGGLLFVHKVAHLHAITGHALDNVKLGVKRDRRKLKLEPLHLPPEGSRSQKPDKTQQ 348          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|673018058|ref|XP_008862990.1| (hypothetical protein H310_01611 [Aphanomyces invadans] >gi|574482193|gb|ETW09185.1| hypothetical protein H310_01611 [Aphanomyces invadans])

HSP 1 Score: 135.576 bits (340), Expect = 3.261e-32
Identity = 125/409 (30.56%), Postives = 188/409 (45.97%), Query Frame = 0
Query:   21 LSSFRRIDRPVTTSVPKQYDISSSIPTVPP-RAPGTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAP--ASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSS-ACSRVYQSVASAIKSLPE--NTVLRVVIKSFLTKTGA-WAS-----AHEGEPLLLLHSLRRLI-RHHPVAIFV-TLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRT 415
            +S+FRR      ++  +Q   S   P VP  RA G KP+ N   L SSG R+LD+VLGGG  LG++ +VE   +  +   L++YF A+G++  +    +  + S AA        LP +L+  + Q +                +AL  +P                     PL+IAWQY KY  T   P      T P    + FC+S+DLS+ I   +            S  +E   +PS  +    Y++V SA++   E  +T    +++  LT   A W S     +H       L ++R L+ RH    I V T++A  +P    R +  + D   EL SFAGH  +   E   F G   +  + H +++      + KLG+KRDRRKL +EPLHLPPEG R+
Sbjct:    1 MSTFRR-----ASAAAQQSPSSPLSPAVPSVRARGIKPFTNDQILTSSGLRELDAVLGGGYLLGSMVVVESSVYGSYGTDLARYFAAEGLANEN---FVYTDASLAA-------TLPLELSTAQKQLK----------------AALVAQP---------------SNENSAPLTIAWQYEKY--TADKPQL----TLPKVTDTRFCHSFDLSKPIADAM-----------KSTWQELSIDPSMPSLQSAYRNVFSAMQHALEVTHTGATDIVRFVLTDLAAPWLSDDMTFSHRCHLHQFLRAVRGLLARHRRRCICVLTVAAFALPTHVVRSIRHLGDYAFELTSFAGHSDQLPSELAEFNGLFFVHKVAHFHSITGHALDNIKLGIKRDRRKLKLEPLHLPPEGSRS 346          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|1160554597|ref|XP_020437240.1| (RNA polymerase II elongator complex subunit [Polysphondylium pallidum PN500] >gi|281210965|gb|EFA85131.1| RNA polymerase II elongator complex subunit [Polysphondylium pallidum PN500])

HSP 1 Score: 134.42 bits (337), Expect = 2.740e-31
Identity = 119/393 (30.28%), Postives = 180/393 (45.80%), Query Frame = 0
Query:   60 NGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDI-----QPEVL------AAAAPPV---------VVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPENTVLRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLG--VKRDRRKLHIEPLHLPP----EGVRTLTEDVEMQKRG 426
            NGN L S+G  DLD ++GGGI +G++ ++EED  S + + L KYFLA+GV   H        G  A      + +LP  L    N+QEQ+E E+       + S A  T          G+S           L IAW+Y+ YI+      R  ++   A++++C+SYD +R +     QPE +      +A A  V          +++ E      + +SA        AS I   P   +LR+ ++SF T    W++  +G  +  LH+L+ L+R       VT+  H   Q     +A + D V+ + SF G    T   F  + G  +I+ +  LN L+    P N L    K  RRK+ IE +HLPP    EG  T T +V   K G
Sbjct:   54 NGNLLTSTGLNDLDEIMGGGIPVGSILMIEEDVNSSYYMFLLKYFLAEGVVQNHGTFFSSLVGLDAF---EVLNKLPARL----NEQEQKEDEEADLLAQREKSGASNT----------GES----------DLKIAWRYQTYIDAENAKKRERST---ANNNYCHSYDFTRKMNIQSFQPEHMHTLTYSSAGAQQVEGSSPYRNLFIEIRELVRKYNQEASA--------ASDIGGAPR--ILRLALQSFATPL--WSNDVDG-VVEFLHALKGLLRSSLAVAVVTVPTHIYSQSFVAKMAHLCDNVVAINSFTGLGGETPAAFSDYLGLFNIRKIAKLNTLSLSYHP-NVLNYVFKMKRRKMCIETIHLPPELSREGDATNTNNVNQAKAG 402          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|695417947|ref|XP_009527264.1| (hypothetical protein PHYSODRAFT_315175 [Phytophthora sojae] >gi|348678389|gb|EGZ18206.1| hypothetical protein PHYSODRAFT_315175 [Phytophthora sojae])

HSP 1 Score: 132.88 bits (333), Expect = 3.926e-31
Identity = 120/388 (30.93%), Postives = 171/388 (44.07%), Query Frame = 0
Query:   54 GTKPWINGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDH----------------ALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSL-------PENTVLRVVIKSFLTKT-GAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTL----SAHHVPQRQRRLLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSN-KLGVKRDRRKLHIEPLHLPPEG 412
            GTKP++NG TL+SSG  +LD+ LGGG+ + T+ +VE    S                  A+ L +YF A+GV+   Q + I A  ++         QLP +L+  + Q +QQ                     L+   +E  D+          PL+IAWQY KY         G          FC+SYDLS+ +  E+LAA  P  +  ++   E       + S VY+ +  AI+ L           V+RV +    +   GA  +AH          LR L+     A+ + L    +    P      L  ++D VL L SFAG R     E   F G L ++ L  ++ALA    PSN + GVKR+RRKL IE  HLPPEG
Sbjct:   17 GTKPFLNGQTLVSSGLSELDAALGGGLLVNTLNVVETPAESSDGASTSLDVGAGASEALAIDLLRYFAAEGVADGKQRVAIVAPDAR----DFIAAQLPLELSLAQRQVKQQ---------------------LADTEKETEDA----------PLTIAWQYGKY---------GQQQKQTQKQRFCHSYDLSKAMHREMLAANEPVAIDPLAWMTE-------SVSDVYERLYLAIEELVQQQKEGGGGQVIRVGMLGLGSSLLGAPDAAHMAALFSFFRRLRALLSQSKGAVCLALLGSDALSTFPTAFVNELRHLSDMVLTLNSFAGTRDLLPEELLEFQGSLTLRKLPRVHALA-CHAPSNTRFGVKRERRKLKIEKFHLPPEG 352          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|1043305370|gb|OBZ90035.1| (Elongator complex protein 4 [Choanephora cucurbitarum])

HSP 1 Score: 130.183 bits (326), Expect = 7.610e-30
Identity = 109/387 (28.17%), Postives = 168/387 (43.41%), Query Frame = 0
Query:   60 NGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYR--KYINTPTPPPRGS-----------ASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVV--VDVSEEEEGQQEPSSACSRVYQSVA----SAIKSLPENTV---LRVVIKSFLTKTGAWASAHEGEPLLLLHSLRRLIRHHPVAIFVTLSAH---HVPQRQRRLLARVADTVLELQSFAGH-RHRTAPEFEAFAGFLHIKALQHLNALAP--------IRGPSNKLGVKRDRRKLHIEPLHLPPEG 412
            NG  L+S+G   LD +LGGG  +GT+ L++EDR + +A +L KYF+AQG+S  H C +   +     + KT        L +        + ED                          D   +     +D + IAW+Y   K   T   P + S            +T      +C+ +DL++ I  ++L  A+  +V     S+E++   + +    ++ Q V     S+ K +   TV   LRV I S  + +  W S          H+LR L+R       VT+ A+    VP   +R +  + D V+E++SFAG   H  A   + + GF H+  L  LN+L P          G SN LG K  R++  IE  HLPPEG
Sbjct:   24 NGQLLVSTGVPSLDDILGGGQPVGTIMLIKEDRATTYAQLLLKYFMAQGISSGHHCAIASRDEDPEEMLKT--------LMWLSTSDRDNDDEDE------------------------SDKAKNALDADNDRMKIAWRYSHLKRFETGVKPKQPSPILSTPIVHKETNTTEEPKPYCSQFDLTKRIPADILEKASTEIVRWTHESDEKDDHDDYAILLDKIRQIVVDGQFSSTKPVAPGTVRNALRVGIHSLASPS--WQSESPNNIYQFFHALRGLLRFSFGTALVTVPAYLYDEVPNFMKR-IEHMVDAVIEIESFAGDPIHNEAAYTQNYHGFFHVHKLPVLNSLLPPSTKLSVLSAGGSNDLGFKLRRKRFAIETFHLPPEG 375          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|1143400254|ref|XP_019954520.1| (PREDICTED: elongator complex protein 4 [Paralichthys olivaceus])

HSP 1 Score: 129.028 bits (323), Expect = 1.748e-29
Identity = 116/399 (29.07%), Postives = 174/399 (43.61%), Query Frame = 0
Query:   53 PGTKPWI-NGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAA------PPVVVDVSEEEEGQQEPSSACSRVYQSV---------ASAIKSLPENTVLRVVIKSFLTKTGAWAS--------AHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRR-LLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRG 426
            PGT+P + NG  L+S+G   LD +LGGG+ +GTV L+EEDR+  ++ ++ KYFLA+GV   H+  V  A+ S   + +     +  D+   K  ++ +                LP  P         DSL        D + IAW+Y+         P+   + A +SS F + YD+S+ ++PE+  AA       P      S       E  +A  R  Q V         AS  KS     +LRV + S    +  W           H       L+ LR L+R       VT+ +H +  R     + R+ D  + L+SF G    T P ++ + G LH++ + HLN LA        L  K  R++  IE LHLPP+    L+E V    RG
Sbjct:   35 PGTRPSVLNGQLLVSTGVTSLDFLLGGGLAVGTVLLIEEDRYDSYSRMILKYFLAEGVVCRHELFVAAAQDSPDDILQELPAPILDDVAIHKPPEQPR----------------LPCEP--------RDSL--------DAMKIAWRYQNL-------PKVQCALA-SSSRFGHYYDVSKTMEPEIRQAAKCHRFYLPEHPTQSSSTHSPMLESYTALLRSLQEVIHREGFDVAASMSKS---RNILRVGLHSL--GSALWGDDLSCHDNPTHRHSLAAFLYGLRALLRSSLSVAVVTVPSHLIQDRALMGSITRLCDNAIALESFKGSERETNPLYKDYHGLLHVRQVPHLNCLASQLPDHKDLAFKLKRKQFSIERLHLPPD----LSETVSRVSRG 384          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|742084388|ref|XP_010874452.1| (PREDICTED: elongator complex protein 4 isoform X1 [Esox lucius])

HSP 1 Score: 127.102 bits (318), Expect = 9.851e-29
Identity = 118/400 (29.50%), Postives = 184/400 (46.00%), Query Frame = 0
Query:   53 PGTKPWI-NGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSS-FCNSYDLSRDIQPEVLAAA------APPVVVDVSEE------EEGQQEPSSACSRVYQSVASAIK------SLPEN---TVLRVVIKSFLTKTGAWAS--------AHEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRRLLARV---ADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNK-LGVKRDRRKLHIEPLHLPPEGVRTLT 417
            PGT+P + NG  ++S+G   LD V+GGG+ +GT+ L+EEDR+  ++ +L KYFLA+GV   H+  V  A+   + +    + +LP  +       +  E + +PC    DP                        GP  D +SIAW+Y+   N P         TA ASSS F + YD+S+ + PE+  AA       P     VS          GQ+    A   + +++   I       SLP+     VLR+ + S    +  W          +H      LL+ LR L+R       VT+ +H +  + + L+ R+    DT + L+SF G    T P ++ + G L+++ + HLN L     P NK L  K  R++  IE LHLPP+   T++
Sbjct:   35 PGTRPSVQNGQLIVSTGVTSLDYVIGGGLAVGTLLLIEEDRYDSYSRMLLKYFLAEGVVCGHELYVASAQDHPSDI----IQELPSPILDDIASPKPVESQTKPC----DPE-----------------------GP--DTMSIAWRYQ---NLP------KVQTALASSSRFGHYYDVSKTMDPEICQAARCHGFYLPEHSATVSSSPAPPPTATGQRPMPEAYVALLKNLQEVIHREGFDGSLPQTKSRNVLRIGLHSL--GSALWGDDLCCRDNPSHGHALTTLLYGLRALLRSSLSVALVTVPSHLI--QNKALMGRITRLCDTAVALESFRGSERETNPLYKDYHGLLNVRQVPHLNCLV-CDLPDNKDLAFKLKRKQFTIERLHLPPDLSETVS 387          
BLAST of EWM26090.1 vs. NCBI_GenBank
Match: gi|1169037959|ref|XP_020471318.1| (LOW QUALITY PROTEIN: elongator complex protein 4 [Monopterus albus])

HSP 1 Score: 126.716 bits (317), Expect = 1.007e-28
Identity = 111/399 (27.82%), Postives = 177/399 (44.36%), Query Frame = 0
Query:   54 GTKPWI-NGNTLISSGNRDLDSVLGGGICLGTVTLVEEDRFSDHALVLSKYFLAQGVSGMHQCLVIGAEGSKAALQKTFVVQLPFDLTYKKNQQEQQEREDRPCTGGSDPSSALPTRPLSTFSRELGDSLPSVGGPRHDPLSIAWQYRKYINTPTPPPRGSASTAPASSSFCNSYDLSRDIQPEVLAAAAPPVVVDVSEEEEGQQEPSSACSRVYQSVASAIKSLPE----------------NTVLRVVIKSFLTKTGAWASA--------HEGEPLLLLHSLRRLIRHHPVAIFVTLSAHHVPQRQRR-LLARVADTVLELQSFAGHRHRTAPEFEAFAGFLHIKALQHLNALAPIRGPSNKLGVKRDRRKLHIEPLHLPPEGVRTLTEDVEMQKRG 426
            GT+P + NG  L+S+G   LD +LGGG+ +GTV L+EEDR+  ++ ++ KYFLA+GV   H+  V  A+ +   + K    +LP  +       +  E+    C    DP+ +L                        D + IAW+Y+   N P        S   +SS F + YD+S+ ++PE+L AA          +   Q  P+   S + +S ++ +KSL E                  +LR+ + S    +  W+          H       L+ LR L+R       VT+ +H +  +     + R+ D  + L+SF G    T P ++ + G LH++ + HLN LA        L  K  R++  IE LHLPP+    L+E V    RG
Sbjct:   38 GTRPSVQNGQLLVSTGVTSLDYLLGGGLAVGTVLLIEEDRYDSYSHMILKYFLAEGVVCHHELFVAAAQHNPHDILK----ELPAPILDDVAVHKPVEQPRLSC----DPTDSL------------------------DSMKIAWRYQ---NLPK-----VQSALASSSRFGHYYDVSKTMEPEILQAAKCHCF--YLPDHPTQSSPTH--SPMLESYSTLLKSLQEVIHREGFDVAAPMSKSRNILRIGLHSL--GSALWSDDLSCHDNPRHRHALTTFLYGLRALLRSSLSVAVVTVPSHLIQDKALMGSITRLCDNAIALESFKGSERETNPLYKDYHGLLHVRQVPHLNCLASQLPDHKDLAFKLKRKQFSIERLHLPPD----LSETVSRVSRG 386          
The following BLAST results are available for this feature:
BLAST of EWM26090.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108084|gb|EWM26090.1|0.000e+0100.00elongator complex protein 4 [Nannochloropsis gadit... [more]
gi|553196471|ref|XP_005856352.1|2.828e-97100.00elongator complex protein 4, partial [Nannochlorop... [more]
gi|698775892|ref|XP_009820990.1|6.659e-3731.23hypothetical protein H257_00142 [Aphanomyces astac... [more]
gi|673018058|ref|XP_008862990.1|3.261e-3230.56hypothetical protein H310_01611 [Aphanomyces invad... [more]
gi|1160554597|ref|XP_020437240.1|2.740e-3130.28RNA polymerase II elongator complex subunit [Polys... [more]
gi|695417947|ref|XP_009527264.1|3.926e-3130.93hypothetical protein PHYSODRAFT_315175 [Phytophtho... [more]
gi|1043305370|gb|OBZ90035.1|7.610e-3028.17Elongator complex protein 4 [Choanephora cucurbita... [more]
gi|1143400254|ref|XP_019954520.1|1.748e-2929.07PREDICTED: elongator complex protein 4 [Paralichth... [more]
gi|742084388|ref|XP_010874452.1|9.851e-2929.50PREDICTED: elongator complex protein 4 isoform X1 ... [more]
gi|1169037959|ref|XP_020471318.1|1.007e-2827.82LOW QUALITY PROTEIN: elongator complex protein 4 [... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4548rna4548Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications