EWM26135.1, cds4533 (CDS) Nannochloropsis gaditana

Overview
NameEWM26135.1
Unique Namecds4533
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:884003..884011 -
Alignment locationCM002463.1:883696..883724 -
Alignment locationCM002463.1:883319..883622 -
Alignment locationCM002463.1:882986..883090 -
Alignment locationCM002463.1:882426..882722 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26135.1
Productphosphoribulokinase uridine kinase family protein
Orig transcript idgnl|cribi|Naga_100014g22.9312.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:884003..884011 -
CM002463.1supercontigCM002463.1:883696..883724 -
CM002463.1supercontigCM002463.1:883319..883622 -
CM002463.1supercontigCM002463.1:882986..883090 -
CM002463.1supercontigCM002463.1:882426..882722 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|585108129|gb|EWM26135.1| (phosphoribulokinase uridine kinase family protein [Nannochloropsis gaditana])

HSP 1 Score: 517.694 bits (1332), Expect = 0.000e+0
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 MFCVLLGDQVSTMEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKGLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQSITDKLDA 247
            MFCVLLGDQVSTMEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKGLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQSITDKLDA
Sbjct:    1 MFCVLLGDQVSTMEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKGLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQSITDKLDA 247          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|1140863216|ref|WP_076718274.1| (uridine kinase [Motiliproteus sp. MSK22-1] >gi|1134398361|gb|OMH36203.1| uridine kinase [Motiliproteus sp. MSK22-1])

HSP 1 Score: 193.741 bits (491), Expect = 1.637e-58
Identity = 103/234 (44.02%), Postives = 141/234 (60.26%), Query Frame = 0
Query:    8 DQVSTMEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQL-TPAQEVVIVEGNYLSLSSSPWCELK-GLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQ 239
            +Q    +++ T+L+ ++D+                E  SQ YWIG+ G P SGKST+  E+  RL        +IPMDGYH+Y+HELD M D    HARRGAP+TFNA +FV DLT A++   G+FP FDH+ GDP+E  I L T   ++V+VEGNYL L  SPWC LK  +FD  W+L  P   +  RV  RHL+TG T ++A  R ++ND PN  ++    +ST  A R+I+
Sbjct:    2 EQSKIYDQLATELMKKIDQL---------------EDNSQ-YWIGLAGVPGSGKSTIAAELKHRLES---LLTIIPMDGYHYYRHELDQMDDPKLAHARRGAPFTFNAKRFVADLTEAKKLGTGTFPDFDHNVGDPIEGAITLTTKTPQIVLVEGNYLLLDDSPWCLLKEQVFDETWLLYVPHAESHRRVYQRHLTTGLTENQARFRVEQNDSPNAELI--TTASTKNANRIIK 214          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|503424681|ref|WP_013659342.1| (uridine kinase [Marinomonas mediterranea] >gi|326544215|gb|ADZ89435.1| phosphoribulokinase/uridine kinase family protein [Marinomonas mediterranea MMB-1])

HSP 1 Score: 182.956 bits (463), Expect = 2.715e-54
Identity = 85/177 (48.02%), Postives = 114/177 (64.41%), Query Frame = 0
Query:   49 YWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKG-LFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMV 224
            YWIG+ GAP SGKST   ++   L D+    V+IPMDGYH Y+H+LD MP+  E + RRGAP+TF+AV+ V +L  A+    G FPSFDHH GDP+E+ I+L    ++V+VEGNYL L+  PW  LK  +FD  W L  P  V+ +RV  RH+ TG T  +A +R   ND  N  ++
Sbjct:   23 YWIGLVGAPGSGKSTFAAQLKDALGDR---LVIIPMDGYHLYRHQLDQMPNREEAYIRRGAPFTFDAVRLVLELVAAKHNGSGVFPSFDHHKGDPIENDIELKSTDQIVLVEGNYLLLNEEPWNRLKAEVFDETWFLDVPISVSNQRVAERHIKTGLTAPQAWQRVMTNDGLNAELI 196          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|739708261|ref|WP_037562239.1| (uridine kinase [Spirochaeta odontotermitis] >gi|699057627|gb|KGM43332.1| uridine kinase [Spirochaeta odontotermitis])

HSP 1 Score: 182.57 bits (462), Expect = 3.615e-54
Identity = 100/216 (46.30%), Postives = 126/216 (58.33%), Query Frame = 0
Query:   25 DEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELK-GLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQ 239
            D A  +R+     TGN      QL WIG+ G P SGKSTL + +  RL +      V+P+DGYH+Y+ ELD M D  E HARRGAP+TFNA KFV DL  AR    G FPSFDH  GDP+E  IQL    ++V+VEGNYL L++ PW  L+  +FD  W L        +RV  RH+ TG T + A RR   ND  N  ++ K   S G A R+I+
Sbjct:    6 DLAAELRQKAARLTGN-----KQL-WIGLAGGPGSGKSTLAEALKSRLPE---LLTVVPLDGYHYYRSELDRMQDPAEAHARRGAPFTFNAKKFVDDLVKARNAGEGVFPSFDHGAGDPVEADIQLLKGPQIVLVEGNYLLLNTEPWIHLRTSVFDETWFLDVAVSECNQRVYERHIKTGKTEEHAQRRVTTNDSLNAELIVK--VSPGNADRIIR 210          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|1126536019|ref|WP_075173609.1| (uridine kinase [Neptunomonas phycophila])

HSP 1 Score: 181.8 bits (460), Expect = 7.661e-54
Identity = 89/187 (47.59%), Postives = 121/187 (64.71%), Query Frame = 0
Query:   41 ASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELK-GLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEK 226
            AS A +Q  WIG+ GAP SGKST+ QE+  ++ ++    +VIP DGYH+Y+HELD+M +   MH RRGA +TFNA K V DL  AR+   G FPSFDH  GDP+E+ I L+    V+IVEG++L L  SPWC LK  +FD  W +    + +  RV  RH+S G T ++A++R   NDV N  ++ K
Sbjct:   16 ASLAHNQQLWIGLAGAPGSGKSTIAQELKAQIGEQ---LLVIPQDGYHYYRHELDTMDNPTYMHVRRGASFTFNADKLVADLVTARQKGEGCFPSFDHGVGDPVENDIHLSRQHRVIIVEGSFLLLDESPWCNLKTHVFDESWFINISLDESNRRVTGRHVSLGLTPEQASQRVAANDVINAELITK 199          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|1126542877|ref|WP_075179723.1| (uridine kinase [Neptunomonas phycophila])

HSP 1 Score: 181.03 bits (458), Expect = 1.767e-53
Identity = 90/187 (48.13%), Postives = 120/187 (64.17%), Query Frame = 0
Query:   41 ASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELK-GLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEK 226
            AS A +Q  WIG+ GAP SGKST+ QE+  ++   G   +VIP DGYH+Y+HELD+M +   MH RRGA +TFNA K V DL  AR+   G FPSFDH  GDP+E+ I L+    V+IVEG++L L  SPWC LK  +FD  W +    + +  RVI RH+S G T ++A++R   ND  N  ++ K
Sbjct:   16 ASLAHNQQLWIGLAGAPGSGKSTIAQELKAQI---GEPLLVIPQDGYHYYRHELDTMDNPTHMHVRRGASFTFNADKLVADLVTARQKGEGCFPSFDHGVGDPVENDIHLSRQHRVIIVEGSFLLLDESPWCNLKTHVFDESWFINISLDESNRRVIGRHVSLGLTPEQASQRVAANDGINAEIITK 199          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|299473453|emb|CBN77850.1| (phosphoribulokinase/uridine kinase family protein [Ectocarpus siliculosus])

HSP 1 Score: 187.578 bits (475), Expect = 9.771e-53
Identity = 90/179 (50.28%), Postives = 119/179 (66.48%), Query Frame = 0
Query:   50 WIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSS-SPWCELKGLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKE 227
            W+ V GAP SGK+TL  EV +R+  + IS + +PMDGYH Y+ ELD +PD  E H RRGA WTF+  +F+ +L +ARR+  GSFP FDH  GDP+E+Q  + P+  VVIVEGNYL L    PW ++ GLFD  W + CP EV  ERV  RH+STG   +EA  R + ND+ N  +V ++
Sbjct:  335 WVAVAGAPGSGKTTLAAEVCQRVQSEEISAICLPMDGYHLYRRELDLLPDPREAHRRRGAHWTFDGRRFLSELGDARRSGRGSFPGFDHARGDPVENQWMVQPSHSVVIVEGNYLLLKGVDPWNQVGGLFDVTWAIRCPPEVCGERVRRRHMSTGLEEEEARARVEGNDLLNARLVSEK 513          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|551657080|ref|XP_005831312.1| (hypothetical protein GUITHDRAFT_139875 [Guillardia theta CCMP2712] >gi|428175442|gb|EKX44332.1| hypothetical protein GUITHDRAFT_139875 [Guillardia theta CCMP2712])

HSP 1 Score: 178.718 bits (452), Expect = 1.705e-52
Identity = 97/233 (41.63%), Postives = 137/233 (58.80%), Query Frame = 0
Query:   13 MEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSS-SPWCELKGLFDARWVLTCPTEVARERVIVRH-LSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQSITD 243
            M  +  +L+D +   L+  K P S          QL WI + G P SGKST+  ++   L+ +G+   ++PMDG+H+Y+ ELD+M +  E HARRGA WTFNA KFV  L   +    G  PSFDH +GDP+ED I +     V++VEGNY+ L    PW +L+ LFD +W++ CP  V RERVI R+ ++ G   +   RR DEND+ N  +V +   S+ +A RVI S  D
Sbjct:    1 MNCVLLELVDHIVRRLQDEKDPHSG--------KQL-WIALAGPPGSGKSTICSKLVSSLSGRGVPAAILPMDGFHYYRSELDTMQNREEAHARRGAHWTFNAHKFVDMLARMKDEGSGRAPSFDHAHGDPVEDAISIEREHRVILVEGNYVLLYDIEPWRKLQHLFDEKWLIVCPEHVLRERVIQRNSVAWGWDRERTARRVDENDMVNARLVME--VSSKYAERVITSQQD 222          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|500095058|ref|WP_011771065.1| (uridine kinase [Psychromonas ingrahamii] >gi|119865033|gb|ABM04510.1| phosphoribulokinase/uridine kinase family protein [Psychromonas ingrahamii 37])

HSP 1 Score: 177.563 bits (449), Expect = 3.528e-52
Identity = 97/227 (42.73%), Postives = 131/227 (57.71%), Query Frame = 0
Query:   15 KIYTDLIDEV-DEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLNDKGISTVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKG-LFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQ 239
            K Y  L D++ D++L++R            A +Q YWI + GAP SGKSTL + +  RL   G    +IPMDG+H+Y+HELD M D  E +ARRGAP+TFNA KFV  +  AR+   G FP FDH+ GDP+E+ I L    ++V++EGNYL L   PW +L+  +FD  W L  P      RV  RH+ TG T  +A  R   ND  N  +V +   S   A R+I+
Sbjct:    2 KDYDQLADQLRDKSLKLR------------AGAQ-YWIALAGAPGSGKSTLAEALKSRL---GELLTIIPMDGFHYYRHELDKMNDPAEAYARRGAPFTFNAPKFVNAVIKARQEGEGLFPGFDHNSGDPVENDISLNKDSKIVLIEGNYLLLDEKPWSQLQNKVFDETWFLYVPLPECNRRVCARHMKTGLTKQQAQHRVASNDSLNAQLVTE--VSIKNAQRIIR 210          
BLAST of EWM26135.1 vs. NCBI_GenBank
Match: gi|571557833|ref|XP_006604481.1| (PREDICTED: putative uridine kinase C227.14 isoform X2 [Glycine max] >gi|947045988|gb|KRG95617.1| hypothetical protein GLYMA_19G161200 [Glycine max])

HSP 1 Score: 176.022 bits (445), Expect = 2.141e-50
Identity = 101/254 (39.76%), Postives = 138/254 (54.33%), Query Frame = 0
Query:    2 FCVLLGDQVSTMEKIYTDLIDEVDEALRIRKLPPSSTGNASEATSQLYWIGVCGAPASGKSTLTQEVARRLN----DKGIS----------TVVIPMDGYHFYKHELDSMPDAHEMHARRGAPWTFNAVKFVQDLTNARRTSMGSFPSFDHHYGDPLEDQIQLTPAQEVVIVEGNYLSLSSSPWCELKGLFDARWVLTCPTEVARERVIVRHLSTGDTLDEATRRADENDVPNGIMVEKEMSSTGWATRVIQSI 241
            F  +L  +   +  +    +DE+ +AL  R LP  S    S   +    +G+ G P +GKSTL  EVARR+N    +K  S           +V+PMDG+H Y+ ELD M +  E HARRGAPWTFN ++ +Q L N R       PSFDH  GDP+ED I +    +VVIVEGNYL L    W E+  LFD +W +    + A +RV+ RH+STG   D A +R + ND  N  ++   M S   A  +I+SI
Sbjct:   53 FFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSV---SSNPNHKLLVGLAGPPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPEEAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNAELI---MKSKKNADIIIKSI 300          
The following BLAST results are available for this feature:
BLAST of EWM26135.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108129|gb|EWM26135.1|0.000e+0100.00phosphoribulokinase uridine kinase family protein ... [more]
gi|1140863216|ref|WP_076718274.1|1.637e-5844.02uridine kinase [Motiliproteus sp. MSK22-1] >gi|113... [more]
gi|503424681|ref|WP_013659342.1|2.715e-5448.02uridine kinase [Marinomonas mediterranea] >gi|3265... [more]
gi|739708261|ref|WP_037562239.1|3.615e-5446.30uridine kinase [Spirochaeta odontotermitis] >gi|69... [more]
gi|1126536019|ref|WP_075173609.1|7.661e-5447.59uridine kinase [Neptunomonas phycophila][more]
gi|1126542877|ref|WP_075179723.1|1.767e-5348.13uridine kinase [Neptunomonas phycophila][more]
gi|299473453|emb|CBN77850.1|9.771e-5350.28phosphoribulokinase/uridine kinase family protein ... [more]
gi|551657080|ref|XP_005831312.1|1.705e-5241.63hypothetical protein GUITHDRAFT_139875 [Guillardia... [more]
gi|500095058|ref|WP_011771065.1|3.528e-5242.73uridine kinase [Psychromonas ingrahamii] >gi|11986... [more]
gi|571557833|ref|XP_006604481.1|2.141e-5039.76PREDICTED: putative uridine kinase C227.14 isoform... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4545rna4545Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications