EWM26187.1, cds4488 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26187.1
Unique Name	cds4488
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002463.1:754512..754737 -
Alignment location	CM002463.1:754066..754361 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26187.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100072g11.8020.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:754512..754737 -
CM002463.1	supercontig	CM002463.1:754066..754361 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26187.1 vs. NCBI_GenBank
Match: gi|585108184|gb|EWM26187.1| (hypothetical protein Naga_100072g11 [Nannochloropsis gaditana])

HSP 1 Score: 355.525 bits (911), Expect = 2.921e-124
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0

Query:    1 MGNKFGEHSIRHGCTEMLHPTSVRTLAKRRRKVAAPLPRFSQRINLVSKTVLLARWQTVILEAHRVRGNFFNFSVLGRARLESWAGFWGYCMATIMRDFSLRIFAHLVRLAVRFHANLLVVEPEDPEASFDERMPNDICRPLARTIRQISGRALIGPVAQATGLEPLRWEPND 173
            MGNKFGEHSIRHGCTEMLHPTSVRTLAKRRRKVAAPLPRFSQRINLVSKTVLLARWQTVILEAHRVRGNFFNFSVLGRARLESWAGFWGYCMATIMRDFSLRIFAHLVRLAVRFHANLLVVEPEDPEASFDERMPNDICRPLARTIRQISGRALIGPVAQATGLEPLRWEPND
Sbjct:    1 MGNKFGEHSIRHGCTEMLHPTSVRTLAKRRRKVAAPLPRFSQRINLVSKTVLLARWQTVILEAHRVRGNFFNFSVLGRARLESWAGFWGYCMATIMRDFSLRIFAHLVRLAVRFHANLLVVEPEDPEASFDERMPNDICRPLARTIRQISGRALIGPVAQATGLEPLRWEPND 173

The following BLAST results are available for this feature:

BLAST of EWM26187.1 vs. NCBI_GenBank

BLAST of EWM26187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108184\|gb\|EWM26187.1\|	2.921e-124	100.00	hypothetical protein Naga_100072g11 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4499	rna4499	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications