EWM26208.1, cds4464 (CDS) Nannochloropsis gaditana

Overview
NameEWM26208.1
Unique Namecds4464
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:679361..679373 +
Alignment locationCM002463.1:679542..679939 +
Alignment locationCM002463.1:680107..680172 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26208.1
ProductTB2/DP1/HVA22-related protein
Orig transcript idgnl|cribi|Naga_100025g14.7499.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:679361..679373 +
CM002463.1supercontigCM002463.1:679542..679939 +
CM002463.1supercontigCM002463.1:680107..680172 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
Homology
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|585108207|gb|EWM26208.1| (TB2/DP1/HVA22-related protein [Nannochloropsis gaditana])

HSP 1 Score: 318.161 bits (814), Expect = 5.948e-110
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MSSVEFPGPRASIPESSAAAHADVPDVFDESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAAVAVLSFLTTTVTASEGGSSQHWGRGPATPQGGTEAP 158
            MSSVEFPGPRASIPESSAAAHADVPDVFDESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAAVAVLSFLTTTVTASEGGSSQHWGRGPATPQGGTEAP
Sbjct:    1 MSSVEFPGPRASIPESSAAAHADVPDVFDESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAAVAVLSFLTTTVTASEGGSSQHWGRGPATPQGGTEAP 158          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|604298011|gb|EYU18099.1| (hypothetical protein MIMGU_mgv1a019061mg, partial [Erythranthe guttata])

HSP 1 Score: 71.633 bits (174), Expect = 2.843e-12
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 0
Query:   37 WSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNA----RDSVWKMTKKSSHSA----AVAVLSFLTTTVTA--------SEGGSSQHWGRG 147
            W  YW+I ++IT +LEK  D  ISW+P+Y  MKLALF++L  PR QG   +Y  LL+P +  +E +I  +    RD  W +     H+     +  VL FL    +         SE   +QH G G
Sbjct:   40 WCQYWIIVAVIT-VLEKIGDVFISWLPMYGEMKLALFIYLWYPRTQGTGYVYDTLLRPYVSRHETDIDRSLIEFRDRAWNLAIYYWHNCTELGSTKVLQFLQFVTSQSARVTHPPSENPVNQHTGGG 165          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|848931214|ref|XP_012828691.1| (PREDICTED: putative HVA22-like protein g [Erythranthe guttata])

HSP 1 Score: 72.0182 bits (175), Expect = 3.291e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 0
Query:   37 WSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNA----RDSVWKMT----KKSSHSAAVAVLSFLTTTVTA--------SEGGSSQHWGRG 147
            W  YW+I ++IT +LEK  D  ISW+P+Y  MKLALF++L  PR QG   +Y  LL+P +  +E +I  +    RD  W +        +   +  VL FL    +         SE   +QH G G
Sbjct:   40 WCQYWIIVAVIT-VLEKIGDVFISWLPMYGEMKLALFIYLWYPRTQGTGYVYDTLLRPYVSRHETDIDRSLIEFRDRAWNLAIYYWHNCTELGSTKVLQFLQFVTSQSARVTHPPSENPVNQHTGGG 165          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|1147614725|ref|XP_020111383.1| (putative HVA22-like protein g [Ananas comosus])

HSP 1 Score: 69.707 bits (169), Expect = 9.046e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0
Query:   30 ESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISN 105
            E Q    W  YW+I +I+T ++EK  D V+SWVP+Y  +KLA F++L  P+ +G+  +Y   L+PL++ YEP+I  
Sbjct:   33 EIQQLRFWCQYWIIVAIVT-VIEKLADTVVSWVPMYGEVKLAFFVYLWYPKTKGSDLVYETFLRPLVMQYEPDIEQ 107          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|1035954511|gb|OAY76507.1| (HVA22-like protein i [Ananas comosus])

HSP 1 Score: 69.707 bits (169), Expect = 9.431e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 0
Query:   30 ESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISN 105
            E Q    W  YW+I +I+T ++EK  D V+SWVP+Y  +KLA F++L  P+ +G+  +Y   L+PL++ YEP+I  
Sbjct:   33 EIQQLRFWCQYWIIVAIVT-VIEKLADTVVSWVPMYGEVKLAFFVYLWYPKTKGSDLVYETFLRPLVMQYEPDIEQ 107          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|747092935|ref|XP_011094253.1| (putative HVA22-like protein g [Sesamum indicum])

HSP 1 Score: 67.3958 bits (163), Expect = 1.584e-10
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   37 WSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNA----RDSVWKMT----KKSSHSAAVAVLSFLTTTVTASEGG 139
            W  YW+I ++IT +LEK  D  ISW+P+Y  MKLALF++L  P+ +G   +Y  LL+P +  +E +I  +    R+  W +        +   +  +L FL    + S  G
Sbjct:   40 WCQYWIIVAVIT-ILEKIGDVFISWLPMYGEMKLALFIYLWYPKTKGTGYVYETLLRPYVSKHETDIDQSLIEFRERAWNLAVYYWHNCTELGSTKILQFLQFVTSQSARG 149          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|299472644|emb|CBN78296.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.3958 bits (163), Expect = 3.225e-10
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0
Query:   36 HWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNARDSVWKMTKKSSHSAAVAVLSFLTTTVT 134
             W  YW++ S+   L+E  VD  +SWVP Y   K+ L +WLA+PR+QGA+++Y  LL P L  YE  I +  + +     +   S   +  + +   VT
Sbjct:   38 QWMTYWVVMSVFA-LVEVFVDFFVSWVPFYYEAKIVLIVWLAMPRYQGASQIYRRLLHPYLDKYEDNIDSGLEEMRAGATRRIQSLGASAATEIAKAVT 135          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|971510296|dbj|GAQ87912.1| (HAV22-like protein [Klebsormidium nitens])

HSP 1 Score: 63.929 bits (154), Expect = 9.426e-10
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0
Query:   32 QSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEIS 104
            +  E+W  YW+I S+++F  E     +I+W+PLY  +KLAL LWL +P+F GAA +Y   + P L  Y  ++ 
Sbjct:   42 EDDENWLTYWVIYSLLSFF-EAVAAPIIAWIPLYNQLKLALILWLVMPQFNGAAYMYRQFIDPALREYGDKLG 113          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|527183522|gb|EPS57872.1| (hypothetical protein M569_16945, partial [Genlisea aurea])

HSP 1 Score: 62.3882 bits (150), Expect = 9.838e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query:   30 ESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNA 106
            E+     W  YW+  ++IT +LEK  DA ISWVPLY  MKLAL+++L  PR +G   +Y  LL+P ++ +E  I  +
Sbjct:   33 ENDELRFWCQYWITVAVIT-VLEKIGDAFISWVPLYGEMKLALYIYLWYPRSRGTGLVYDSLLRPCVLRHETNIDRS 108          
BLAST of EWM26208.1 vs. NCBI_GenBank
Match: gi|147789755|emb|CAN67411.1| (hypothetical protein VITISV_025622 [Vitis vinifera])

HSP 1 Score: 65.0846 bits (157), Expect = 1.036e-9
Identity = 42/141 (29.79%), Postives = 68/141 (48.23%), Query Frame = 0
Query:   30 ESQSAEHWSLYWLISSIITFLLEKPVDAVISWVPLYRWMKLALFLWLALPRFQGAARLYYVLLQPLLITYEPEISNA----RDSVWKM-------TKKSSHSAAVAVLSFL--TTTVTASEGGSSQHWGRGPATPQGGTEA 157
            E +    W  YW+I +++T + E+  D  ISW+P+Y  MKLA  ++L  P+ +G   +Y VLL+P +  +E +I       R  VW +         K   +  V +L FL   +    S GGS +    G +T Q   ++
Sbjct:   52 EIEELRFWCQYWIIVAMLT-VTERFADIFISWLPMYGEMKLAFIIYLWYPKTKGTGYVYEVLLRPYVAKHETDIDRKLLELRARVWDLAIFYWQHCAKFGQTTFVQMLQFLAAQSARMPSHGGSEKEVEEGKSTRQDSKKS 191          
The following BLAST results are available for this feature:
BLAST of EWM26208.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108207|gb|EWM26208.1|5.948e-110100.00TB2/DP1/HVA22-related protein [Nannochloropsis gad... [more]
gi|604298011|gb|EYU18099.1|2.843e-1236.22hypothetical protein MIMGU_mgv1a019061mg, partial ... [more]
gi|848931214|ref|XP_012828691.1|3.291e-1235.43PREDICTED: putative HVA22-like protein g [Erythran... [more]
gi|1147614725|ref|XP_020111383.1|9.046e-1242.11putative HVA22-like protein g [Ananas comosus][more]
gi|1035954511|gb|OAY76507.1|9.431e-1242.11HVA22-like protein i [Ananas comosus][more]
gi|747092935|ref|XP_011094253.1|1.584e-1033.33putative HVA22-like protein g [Sesamum indicum][more]
gi|299472644|emb|CBN78296.1|3.225e-1034.34conserved unknown protein [Ectocarpus siliculosus][more]
gi|971510296|dbj|GAQ87912.1|9.426e-1039.73HAV22-like protein [Klebsormidium nitens][more]
gi|527183522|gb|EPS57872.1|9.838e-1042.86hypothetical protein M569_16945, partial [Genlisea... [more]
gi|147789755|emb|CAN67411.1|1.036e-929.79hypothetical protein VITISV_025622 [Vitis vinifera... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4475rna4475Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications