EWM26247.1, cds4453 (CDS) Nannochloropsis gaditana

Overview
NameEWM26247.1
Unique Namecds4453
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:650924..652147 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26247.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100025g25.7538.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:650924..652147 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|585108246|gb|EWM26247.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 0
Query:    1 MALKAKKPKDTSLDAGGGKEKTGQKKEVDSRLAKPVKGVKKGSNDAEDRKSGAEGAIDGSTNSPPETFQTNSADFVALSDAVKKKMAIQAAKDQRKEGKAKARKAAAAAKASKPNTVIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDDLAVEAEKSEGKSGAGGLARRVRGQGGDNGGGKGKRRMTEPEAEAAPEEKVKGNTSSKKKAKVGTLDDVSSTPKGGKRVEKETGGAAATPSTTGKKSHAVLDADQVVKKSAAQTGGVGGKKGGKKGAASKKK 407
            MALKAKKPKDTSLDAGGGKEKTGQKKEVDSRLAKPVKGVKKGSNDAEDRKSGAEGAIDGSTNSPPETFQTNSADFVALSDAVKKKMAIQAAKDQRKEGKAKARKAAAAAKASKPNTVIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDDLAVEAEKSEGKSGAGGLARRVRGQGGDNGGGKGKRRMTEPEAEAAPEEKVKGNTSSKKKAKVGTLDDVSSTPKGGKRVEKETGGAAATPSTTGKKSHAVLDADQVVKKSAAQTGGVGGKKGGKKGAASKKK
Sbjct:    1 MALKAKKPKDTSLDAGGGKEKTGQKKEVDSRLAKPVKGVKKGSNDAEDRKSGAEGAIDGSTNSPPETFQTNSADFVALSDAVKKKMAIQAAKDQRKEGKAKARKAAAAAKASKPNTVIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDDLAVEAEKSEGKSGAGGLARRVRGQGGDNGGGKGKRRMTEPEAEAAPEEKVKGNTSSKKKAKVGTLDDVSSTPKGGKRVEKETGGAAATPSTTGKKSHAVLDADQVVKKSAAQTGGVGGKKGGKKGAASKKK 407          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|672817465|gb|KFH62370.1| (hypothetical protein MVEG_11579 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 188.734 bits (478), Expect = 2.582e-52
Identity = 76/151 (50.33%), Postives = 115/151 (76.16%), Query Frame = 0
Query:  117 VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQ 267
            V+YLG +PHGF+E+QM+A+F QFG V  +RLSR+KKTGKS+ YAF+EFA  EVA +VA+TM  Y L G +L C+ L PS++HP +F+ A+KK++ IPW+++ KD+  A K+  + ++   +L++ ++ KR +LA LGI+YDFPGY+A+  +
Sbjct:  231 VVYLGRIPHGFYEEQMQAYFTQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPSQIHPAMFVGANKKFKAIPWQKISKDKHNADKSASQIKQVSKKLLKNESAKRAKLADLGIEYDFPGYKASVVE 381          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|1032644962|gb|OAQ26284.1| (FHA domaininteracting nucleolar phospho protein putat [Mortierella elongata AG-77])

HSP 1 Score: 181.8 bits (460), Expect = 1.401e-51
Identity = 75/151 (49.67%), Postives = 112/151 (74.17%), Query Frame = 0
Query:  117 VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQ 267
            V+YLG +PHGF+EDQM A+F QFG V  +RLSR+KKTGKS+ YAF+EFA  EVA +VA+TM  Y L G +L C+ L P+++HP +FL A+KK++ IPW+++ K++  A K+  + ++   +L++ ++ KR +LA LGI Y+FPGY+A   +
Sbjct:   70 VVYLGRIPHGFYEDQMNAYFSQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVADIVADTMDNYLLFGHQLKCKALQPTQIHPAMFLGANKKFKAIPWQKISKEKHNAEKSAAQMKQVAKKLLKNESAKRAKLAELGIDYEFPGYKANIQE 220          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|1183354286|gb|ORX82090.1| (RNA-binding domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 182.185 bits (461), Expect = 3.802e-51
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 0
Query:   89 QAAKDQRKEGKAKARKAAAAAKAS--KPNT-VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGY 261
              A D + E K K +      KA   K +T VIYLG +PHGF+ED+MRA+FGQFG V  +RLSR+KKTGKS+ YAF+EF   +VA +VAETM  Y L G  L C+V+P  ++HPKLF  A+KK++VIPW ++ ++    PKT E   + + +L++ + + R +L  LGI YDFPGY
Sbjct:   86 HIALDPQDEAKLKKKLEQLDQKAHTEKVDTGVIYLGRIPHGFYEDEMRAYFGQFGTVTRLRLSRNKKTGKSKHYAFIEFKSMDVAEIVAETMNNYLLYGHLLKCKVIPEDKLHPKLFDGANKKFKVIPWNKIAREEHNKPKTRESRNRVVKKLLKKEAKTRAKLQELGIDYDFPGY 261          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|1183504461|gb|ORZ28044.1| (hypothetical protein BCR41DRAFT_317809 [Lobosporangium transversale])

HSP 1 Score: 183.341 bits (464), Expect = 1.135e-50
Identity = 76/151 (50.33%), Postives = 111/151 (73.51%), Query Frame = 0
Query:  117 VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQ 267
            V+YLG +PHGF+E+QM+A+F QFG V  +RLSR+KKTGKS+ YAF+EFA  EVA +VA+TM  Y L G +L C+ L PS++HP +F  A+KK++ IPW ++ K++  A KT  ++ +   +L++ +  KR +LA LGI YDFPGY+A+  +
Sbjct:  189 VVYLGRIPHGFYEEQMKAYFSQFGKVLRLRLSRNKKTGKSKHYAFIEFASQEVAEIVADTMNNYLLFGHQLKCKALQPSQIHPAMFSGANKKFKAIPWLKIAKEKHNAEKTTVQSNQIKKKLLKNEAAKRAKLAELGIDYDFPGYKASVPE 339          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|156397983|ref|XP_001637969.1| (predicted protein [Nematostella vectensis] >gi|156225085|gb|EDO45906.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 178.333 bits (451), Expect = 1.632e-50
Identity = 87/191 (45.55%), Postives = 125/191 (65.45%), Query Frame = 0
Query:   86 MAIQAAKDQRKEGKAKARKAAAAAKASKPNTVIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDD 276
            +A+ + K +  E K K  K         P  VIYLGH+PHGFFE++++ FF QFG V  IRLSRSKK+ +S+GYAF+EFA  EVA + A+TM  Y + GR L C+V+P  ++HP+L+  +++K+R +P RQ++ DR    KT+ E  K +S L++ + RKRK+L  LGI Y+FPGY   A +   K K+ D
Sbjct:   17 LALDSDKQKEFEDKVKKIKPKGDEDELSPG-VIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTMHNYMMFGRLLKCKVVPNEKIHPRLWKGSNRKFRHVPRRQIDIDRHNKVKTQNEHEKQVSNLLKKETRKRKKLEKLGIPYEFPGYAGEAEETQPKHKRFD 206          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|1028563576|gb|OAJ32768.1| (hypothetical protein BDEG_28648 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 181.415 bits (459), Expect = 8.121e-50
Identity = 82/172 (47.67%), Postives = 118/172 (68.60%), Query Frame = 0
Query:  117 VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDDLAVEAEKSEGKS 288
            V+YLGH+PHGF+E +M ++F QFG+V  +RLSR+KKTG S+ YAF+EF + EVA +VA+TM  Y +  R L C+V+   ++H   F   D+K+RVIPW +L++DR+  PKT EE     ++L + D++KRK+L  LGI Y+FPGY   A++     +K  LA  AEK+  KS
Sbjct:  185 VVYLGHIPHGFYEAEMLSYFSQFGEVTRLRLSRNKKTGHSKHYAFVEFKDIEVAKIVADTMDNYLMFNRMLKCKVVSADKLHADTFKGCDRKFRVIPWNKLQRDRQNKPKTAEEWDTIQTKLEKRDSKKRKQLEELGIDYEFPGYAGAAAE-----RKAKLAASAEKTLKKS 351          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|983146233|gb|KWU44203.1| (RNA-binding domain-containing protein, partial [Rhodotorula sp. JG-1b])

HSP 1 Score: 175.637 bits (444), Expect = 1.538e-49
Identity = 84/175 (48.00%), Postives = 121/175 (69.14%), Query Frame = 0
Query:  118 IYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATASQAYVKRKKDDLAVEAEKSEGKSGAGG 292
            IYLG +P GF+ED+MR++F QFG+V  +RLSR+KKTG S+ YAF+EF  A VA +V ETM  Y L G  LVC+V+P  ++HPKL++ A++K+RV+P  + +  RR  PKT+E+  K   RL+  +++KRK+LA LGI+YDF GY     +  V+ K ++ A    K +G+  AGG
Sbjct:    3 IYLGRIPKGFYEDEMRSYFSQFGEVTRLRLSRNKKTGASKHYAFIEFKYASVAQIVQETMDNYLLLGHILVCKVVPDDQIHPKLWVGANRKFRVVPKSRKDAARRNKPKTDEQKEKIKKRLLSREDKKRKQLAELGIEYDFAGYRGAGKEEQVEAKVEEAAKPTPKKKGRKSAGG 177          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|568009610|gb|ETL83810.1| (hypothetical protein L917_16289, partial [Phytophthora parasitica])

HSP 1 Score: 171.014 bits (432), Expect = 6.340e-47
Identity = 99/255 (38.82%), Postives = 146/255 (57.25%), Query Frame = 0
Query:   17 GGKEKTGQKKEVDSRLAKPVKG-VKKGSNDAEDRKSGAEGAIDGSTNSPPETFQTNSADFVALSDAVKKKMAIQAAKDQRKEGKAKARKAAAAAKA-------SKPNTVIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEA 263
            GG   +  K+  ++ ++K +   ++K   D  D  S +E     +TN    TF   S D V L  A +   +    K +RK    + ++AAA AK        ++P+ VIYLG +PHGF+E QM  FF QFG V+ +RLSR+K+TG S+ YAF++F E EVA +VA TM  Y L    L C ++P   VH ++F+ A+K+++ +P + + ++R  A KT E+      RLV  + +KRK L  LGI YDFPGYEA
Sbjct:    7 GGVCHSSDKRLAETMVSKKIAAQLEKLQGDEWDSDSDSE-----TTNVVSNTFDA-SNDLVTLPTAAEAAASASTGK-KRKSKMQRKKEAAALAKVQQEEKKKNQPSNVIYLGRIPHGFYEKQMLGFFKQFGTVRRVRLSRNKRTGNSKHYAFIQFDEPEVAQIVANTMNEYRLFDHTLSCHIVPSHAVHERMFIGANKEFKPLPRQAINRNRHNAEKTYEQTVINNKRLVTKERQKRKVLKALGIDYDFPGYEA 254          
BLAST of EWM26247.1 vs. NCBI_GenBank
Match: gi|1183456103|gb|ORY80162.1| (RNA-binding domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 171.014 bits (432), Expect = 6.431e-47
Identity = 74/149 (49.66%), Postives = 104/149 (69.80%), Query Frame = 0
Query:  117 VIYLGHVPHGFFEDQMRAFFGQFGDVKHIRLSRSKKTGKSRGYAFLEFAEAEVASVVAETMQGYYLGGRKLVCEVLPPSRVHPKLFLDADKKWRVIPWRQLEKDRRTAPKTEEEARKCLSRLVRGDNRKRKRLAGLGIQYDFPGYEATA 265
            VI+L H+PHGF+E QM+ +F QFGDV  +RLSR+KKTGKS+ YAF+EF  A+VA +VAETM  Y L    L C V+P  ++ P  F+ A+KK++VIPW ++E+ ++   K+  + RK +  L++ D +KRKRL  LGI Y+F GY A  
Sbjct:  107 VIFLSHIPHGFYEKQMKEYFTQFGDVTRLRLSRNKKTGKSKHYAFIEFKNAQVAQIVAETMNNYLLYSHVLKCSVIPEDKLDPNTFVGANKKFKVIPWAEIERKKKQELKSGAKYRKNVKNLLKKDEKKRKRLQELGIDYEFNGYAANV 255          
The following BLAST results are available for this feature:
BLAST of EWM26247.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108246|gb|EWM26247.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|672817465|gb|KFH62370.1|2.582e-5250.33hypothetical protein MVEG_11579 [Mortierella verti... [more]
gi|1032644962|gb|OAQ26284.1|1.401e-5149.67FHA domaininteracting nucleolar phospho protein pu... [more]
gi|1183354286|gb|ORX82090.1|3.802e-5148.86RNA-binding domain-containing protein [Basidiobolu... [more]
gi|1183504461|gb|ORZ28044.1|1.135e-5050.33hypothetical protein BCR41DRAFT_317809 [Lobosporan... [more]
gi|156397983|ref|XP_001637969.1|1.632e-5045.55predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1028563576|gb|OAJ32768.1|8.121e-5047.67hypothetical protein BDEG_28648 [Batrachochytrium ... [more]
gi|983146233|gb|KWU44203.1|1.538e-4948.00RNA-binding domain-containing protein, partial [Rh... [more]
gi|568009610|gb|ETL83810.1|6.340e-4738.82hypothetical protein L917_16289, partial [Phytopht... [more]
gi|1183456103|gb|ORY80162.1|6.431e-4749.66RNA-binding domain-containing protein [Neocallimas... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4464rna4464Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications