EWM26212.1, cds4450 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|585108211|gb|EWM26212.1| (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0 Query: 1 MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE 268 MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE Sbjct: 1 MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE 268
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|298705417|emb|CBJ28700.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 73.9442 bits (180), Expect = 1.236e-11 Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 0 Query: 22 YHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGR 125 YHE QR + C H LNNL+Q W + M+ LA LG + ES LRR Y+S +P +G YD++V++EALK+R R +HV+ N + Sbjct: 2 YHERQRLMQCAMHALNNLFQEPWANRELMERLALELGNREATLRS--------ESGLRR----LLINPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFNAK 93
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|1026760948|gb|OAE22563.1| (hypothetical protein AXG93_731s1060 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 63.1586 bits (152), Expect = 2.798e-8 Identity = 67/229 (29.26%), Postives = 93/229 (40.61%), Query Frame = 0 Query: 19 GPSYHETQRRLCCGTHTLNNLYQ-HHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGER 246 G YHE QR C H LNNL Q + +D +A L A +S + W L+R + G YDV+VL+ AL R ++D+ + R GV G DE G + +G+I+N S+ + W GRHW+AL A +G RW+ +DS P P E + EAV E G+ +V E G R Sbjct: 13 GGVYHERQRLQLCLLHALNNLLQGENAFTRKELDDIADRLPAM---TSSSERWRPW-SLILKRHRNSLT-----------GDYDVNVLIAALASR--------------QKDVK-WYDRRKGV----QGLNVDE-YGSQLVGIIVNVPSKRFWNLW--TGRHWVAL------RAVNG----RWYNLDSDFPTPRAFAHGEADLKKYLEAVFAESGEVLIVTEGKADGNR 194
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|769807733|ref|XP_011624730.1| (josephin-like protein [Amborella trichopoda]) HSP 1 Score: 62.003 bits (149), Expect = 3.863e-8 Identity = 60/225 (26.67%), Postives = 86/225 (38.22%), Query Frame = 0 Query: 16 MANGPSYHETQRRLCCGTHTLNNLYQ-HHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVE 239 M N YHE QR C H LNNL Q + +D +A+ L D GQ P + G YD++VL+ AL+ R R H L+ G DL++ ++ L IGV+LN R W RHW+AL +G W+ +DS L AP + V + +A+ + GQ ++E Sbjct: 1 MENKEIYHEKQRLQFCLLHALNNLLQGKDSFTRSDLDDIANKLDLIDPNKEGQ---------------SPLSLIWKSHHNSLTGNYDINVLISALEGRGKRVVWHDLRKGASSIDLSLSNISL--------------------IGVLLNVPVRKLGGLW--RSRHWVAL------RMING----IWYNLDSDLKAPKPFENVDEVVTFL-DAILSQGGQILTILE 177
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|552826534|ref|XP_005847048.1| (hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis] >gi|307106701|gb|EFN54946.1| hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis]) HSP 1 Score: 62.003 bits (149), Expect = 3.489e-7 Identity = 59/204 (28.92%), Postives = 84/204 (41.18%), Query Frame = 0 Query: 18 NGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVA 221 + P YHE QR C HTLNNL+Q D+ +D G A++ + G+ P + LG +DV+V+ AL+ + L+ DL+ H+ L G++LN K +R +L GRHWLAL + GG RWW +DS LPAP +G + A A Sbjct: 4 SAPGYHERQRLQQCLLHTLNNLFQQRVFDSVELD------GIANQLAPGR------------------LPILHPHRTLFLGNWDVNVMELALRRHGKKLHWCDLR------DLSFAHLDLDA-----------------CWGLLLNVKGEGALSR-ILGGRHWLAL-------KSFGG---RWWDLDSTLPAPQPIGSSSCAAA 149 The following BLAST results are available for this feature:
BLAST of EWM26212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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