EWM26212.1, cds4450 (CDS) Nannochloropsis gaditana

Overview
NameEWM26212.1
Unique Namecds4450
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:647963..647999 -
Alignment locationCM002463.1:646993..647762 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26212.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100025g29.7503.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:647963..647999 -
CM002463.1supercontigCM002463.1:646993..647762 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008242omega peptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR006155Josephin
Homology
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|585108211|gb|EWM26212.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE 268
            MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE
Sbjct:    1 MQVAQPLWPAYPLRVMANGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGERGSGGRGVGGGEESHGGNRSDGE 268          
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|298705417|emb|CBJ28700.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9442 bits (180), Expect = 1.236e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 0
Query:   22 YHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGR 125
            YHE QR + C  H LNNL+Q  W +   M+ LA  LG  +             ES LRR         Y+S +P +G YD++V++EALK+R  R  +HV+ N +
Sbjct:    2 YHERQRLMQCAMHALNNLFQEPWANRELMERLALELGNREATLRS--------ESGLRR----LLINPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFNAK 93          
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|1026760948|gb|OAE22563.1| (hypothetical protein AXG93_731s1060 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 63.1586 bits (152), Expect = 2.798e-8
Identity = 67/229 (29.26%), Postives = 93/229 (40.61%), Query Frame = 0
Query:   19 GPSYHETQRRLCCGTHTLNNLYQ-HHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVEAVGAGER 246
            G  YHE QR   C  H LNNL Q  +      +D +A  L A    +S   +   W    L+R  +              G YDV+VL+ AL  R              ++D+   + R  GV     G   DE  G + +G+I+N  S+ +   W   GRHW+AL       A +G    RW+ +DS  P P      E  +    EAV  E G+  +V E    G R
Sbjct:   13 GGVYHERQRLQLCLLHALNNLLQGENAFTRKELDDIADRLPAM---TSSSERWRPW-SLILKRHRNSLT-----------GDYDVNVLIAALASR--------------QKDVK-WYDRRKGV----QGLNVDE-YGSQLVGIIVNVPSKRFWNLW--TGRHWVAL------RAVNG----RWYNLDSDFPTPRAFAHGEADLKKYLEAVFAESGEVLIVTEGKADGNR 194          
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|769807733|ref|XP_011624730.1| (josephin-like protein [Amborella trichopoda])

HSP 1 Score: 62.003 bits (149), Expect = 3.863e-8
Identity = 60/225 (26.67%), Postives = 86/225 (38.22%), Query Frame = 0
Query:   16 MANGPSYHETQRRLCCGTHTLNNLYQ-HHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVASVREAVCGEEGQAFLVVE 239
            M N   YHE QR   C  H LNNL Q       + +D +A+ L   D    GQ                P +           G YD++VL+ AL+ R  R   H L+ G    DL++ ++ L                    IGV+LN   R     W    RHW+AL         +G     W+ +DS L AP      +  V  + +A+  + GQ   ++E
Sbjct:    1 MENKEIYHEKQRLQFCLLHALNNLLQGKDSFTRSDLDDIANKLDLIDPNKEGQ---------------SPLSLIWKSHHNSLTGNYDINVLISALEGRGKRVVWHDLRKGASSIDLSLSNISL--------------------IGVLLNVPVRKLGGLW--RSRHWVAL------RMING----IWYNLDSDLKAPKPFENVDEVVTFL-DAILSQGGQILTILE 177          
BLAST of EWM26212.1 vs. NCBI_GenBank
Match: gi|552826534|ref|XP_005847048.1| (hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis] >gi|307106701|gb|EFN54946.1| hypothetical protein CHLNCDRAFT_134697 [Chlorella variabilis])

HSP 1 Score: 62.003 bits (149), Expect = 3.489e-7
Identity = 59/204 (28.92%), Postives = 84/204 (41.18%), Query Frame = 0
Query:   18 NGPSYHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSLGAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKNGRLEEDLAVLHVRLSGVAGRGPGATEDEGRGERAIGVILNRKSRTWAARWLLEGRHWLALIPWPSGSAASGGEQIRWWMMDSKLPAPVLVGGAEHAVA 221
            + P YHE QR   C  HTLNNL+Q    D+  +D      G A++ + G+                   P  +      LG +DV+V+  AL+    +     L+      DL+  H+ L                     G++LN K     +R +L GRHWLAL        + GG   RWW +DS LPAP  +G +  A A
Sbjct:    4 SAPGYHERQRLQQCLLHTLNNLFQQRVFDSVELD------GIANQLAPGR------------------LPILHPHRTLFLGNWDVNVMELALRRHGKKLHWCDLR------DLSFAHLDLDA-----------------CWGLLLNVKGEGALSR-ILGGRHWLAL-------KSFGG---RWWDLDSTLPAPQPIGSSSCAAA 149          
The following BLAST results are available for this feature:
BLAST of EWM26212.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585108211|gb|EWM26212.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|298705417|emb|CBJ28700.1|1.236e-1137.50conserved unknown protein [Ectocarpus siliculosus][more]
gi|1026760948|gb|OAE22563.1|2.798e-829.26hypothetical protein AXG93_731s1060 [Marchantia po... [more]
gi|769807733|ref|XP_011624730.1|3.863e-826.67josephin-like protein [Amborella trichopoda][more]
gi|552826534|ref|XP_005847048.1|3.489e-728.92hypothetical protein CHLNCDRAFT_134697 [Chlorella ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4461rna4461Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications