EWM26240.1, cds4443 (CDS) Nannochloropsis gaditana

Overview
NameEWM26240.1
Unique Namecds4443
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:630737..630871 +
Alignment locationCM002463.1:631012..631138 +
Alignment locationCM002463.1:631314..631453 +
Alignment locationCM002463.1:631544..631564 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26240.1
Producthistone family protein dna-binding protein
Orig transcript idgnl|cribi|Naga_100025g36.7531.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:630737..630871 +
CM002463.1supercontigCM002463.1:631012..631138 +
CM002463.1supercontigCM002463.1:631314..631453 +
CM002463.1supercontigCM002463.1:631544..631564 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020816Histone-like_DNA-bd_CS
IPR010992IHF-like_DNA-bd_dom
IPR000119Hist_DNA-bd_bac
Homology
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|585108239|gb|EWM26240.1| (histone family protein dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 281.567 bits (719), Expect = 5.219e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MLRSSTSFFLLFLALTASIIHAFLHVNIPTPSRGQPLMMATKAETSLKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHRAS 140
            MLRSSTSFFLLFLALTASIIHAFLHVNIPTPSRGQPLMMATKAETSLKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHRAS
Sbjct:    1 MLRSSTSFFLLFLALTASIIHAFLHVNIPTPSRGQPLMMATKAETSLKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHRAS 140
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|648530417|ref|WP_026222168.1| (HU family DNA-binding protein [filamentous cyanobacterium ESFC-1])

HSP 1 Score: 97.0561 bits (240), Expect = 8.749e-24
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 0 
Query:   47 LKKTELLDQVVQK-SGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKI 135
            + K +L+D+VVQK  G+TK  AD +L+A+ ++I ES+A+G KV+LVGFG+F    R AR  RNP+TGEP+Q+P TTV  F+  K  K+K+
Sbjct:    1 MNKGQLVDEVVQKVDGMTKKQADAILSAILETIQESVAEGNKVTLVGFGTFEPRKRQAREGRNPKTGEPMQIPATTVPAFSAGKFFKEKV 90
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|647530149|ref|WP_025820775.1| (HU family DNA-binding protein [Shewanella marina])

HSP 1 Score: 96.6709 bits (239), Expect = 1.180e-23
Identity = 46/90 (51.11%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKIN 136
            + K+EL+ Q+  KSG+TKA + + L +   +IAE+M DG+KVS++GFGSF TS R+AR  RNP+TG+ IQ+P  TV  F   K LKD +N
Sbjct:    1 MNKSELVAQMATKSGLTKAESARALQSFEQTIAEAMKDGQKVSIIGFGSFETSQRAARTGRNPQTGKEIQIPAATVPKFKAGKQLKDCVN 90
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|1079299003|ref|WP_070109858.1| (HU family DNA-binding protein [Clostridium acetireducens] >gi|1079177939|gb|OFI06571.1| DNA-binding protein HU [Clostridium acetireducens DSM 10703])

HSP 1 Score: 95.9005 bits (237), Expect = 2.946e-23
Identity = 42/91 (46.15%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINH 137
            + K+EL+  + +KSG+TK  A+  L A  +++ E++ +G KV L+GFG+F T  R+ARM RNPRT E I++PE+TV  F P K  KD++N 
Sbjct:    1 MNKSELITSISEKSGLTKKDAEVALKAFIETVEETLENGDKVQLIGFGTFETRKRAARMGRNPRTKEEIEIPESTVPVFKPGKEFKDRVNK 91
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|1214783495|ref|WP_088894649.1| (DNA-binding protein [Leptolyngbya ohadii])

HSP 1 Score: 95.5153 bits (236), Expect = 4.656e-23
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINH 137
            + K EL+D++ +K+ VTK  AD VL A  DSI E++A+G KV+LVGFGSF    R AR  RNP+TGE + +PETT   F+  K+ K+K++ 
Sbjct:    1 MNKGELVDKIAEKASVTKKEADAVLTAAIDSIMEAVAEGDKVTLVGFGSFEPRKRQAREGRNPKTGEAMTIPETTAPAFSAGKMFKEKVSQ 91
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|489636230|ref|WP_003540670.1| (HU family DNA-binding protein [Desulfotomaculum nigrificans] >gi|333747900|gb|AEF93007.1| histone family protein DNA-binding protein [Desulfotomaculum nigrificans CO-1-SRB])

HSP 1 Score: 93.9745 bits (232), Expect = 1.706e-22
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKI 135
            + K EL+  V +K+ +TK  A+K ++AV DSI E+MA G K+ LVGFG+F +  R AR  RNP+TGE IQ+P T V  F P K LKD +
Sbjct:    1 MNKAELISAVAEKTELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKAREGRNPQTGETIQIPATRVPVFKPGKALKDAV 89
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|497240815|ref|WP_009555061.1| (HU family DNA-binding protein [Oscillatoriales cyanobacterium JSC-12] >gi|410712984|gb|EKQ70485.1| bacterial nucleoid DNA-binding protein [Oscillatoriales cyanobacterium JSC-12])

HSP 1 Score: 93.9745 bits (232), Expect = 2.461e-22
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKI 135
            + K+EL+D +  ++ +TK  AD VL AV D+I E+++ G+KV+LVGFG+F    R AR  RNP TG+PIQ+P TTV  F+  K+ K+K+
Sbjct:    1 MNKSELVDAIASRASITKKDADNVLTAVVDAIMEAVSSGEKVTLVGFGTFEARQRQAREGRNPSTGKPIQIPATTVPAFSAGKLFKEKV 89
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|495526098|ref|WP_008250743.1| (HU family DNA-binding protein [Limnobacter sp. MED105] >gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105])

HSP 1 Score: 93.5893 bits (231), Expect = 2.600e-22
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINHR 138
            + KTEL+D +  KS  +KA A K+L A  D++++ MADG KV LVGFG+F T  R+AR  RNPRTGE I++    V  F P + LK K+N +
Sbjct:    1 MNKTELIDAIATKSECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAAREGRNPRTGETIKIAAAVVPKFTPGQGLKTKVNTK 92
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|1084637328|gb|OGO86228.1| (DNA-binding protein [Clostridiales bacterium GWD2_32_59])

HSP 1 Score: 93.2041 bits (230), Expect = 2.809e-22
Identity = 41/91 (45.05%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINH 137
            + K+EL+  + + SG+TK VA++ L +  D +A+ ++ G K+ LVGFG+F TS R+AR  RNP+TG+ +Q+P +TV  F P K LKD +N 
Sbjct:    1 MNKSELITAMAENSGLTKKVAEQALKSFQDVVAKELSTGSKIQLVGFGTFETSSRTARTGRNPQTGKTMQIPASTVPKFKPGKALKDSVNQ 91
[Close]
BLAST of EWM26240.1 vs. NCBI_GenBank
Match: gi|494505680|ref|WP_007295140.1| (HU family DNA-binding protein [delta proteobacterium MLMS-1] >gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium MLMS-1])

HSP 1 Score: 93.2041 bits (230), Expect = 3.098e-22
Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = 0 
Query:   47 LKKTELLDQVVQKSGVTKAVADKVLAAVTDSIAESMADGKKVSLVGFGSFGTSVRSARMARNPRTGEPIQVPETTVATFAPSKVLKDKINH 137
            + K EL++++  +  ++KA ADK++  V D++AE++A G+K++  GFG+F T  R+A+ +RNPRTGEP+QVP      F P K LKD++N 
Sbjct:    1 MNKKELVEKLAAEGEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKESRNPRTGEPVQVPARKAVAFKPGKTLKDQVNK 91
The following BLAST results are available for this feature:
BLAST of EWM26240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108239|gb|EWM26240.1|5.219e-96100.00histone family protein dna-binding protein [Nannoc... [more]
gi|648530417|ref|WP_026222168.1|8.749e-2451.11HU family DNA-binding protein [filamentous cyanoba... [more]
gi|647530149|ref|WP_025820775.1|1.180e-2351.11HU family DNA-binding protein [Shewanella marina][more]
gi|1079299003|ref|WP_070109858.1|2.946e-2346.15HU family DNA-binding protein [Clostridium acetire... [more]
gi|1214783495|ref|WP_088894649.1|4.656e-2349.45DNA-binding protein [Leptolyngbya ohadii][more]
gi|489636230|ref|WP_003540670.1|1.706e-2250.56HU family DNA-binding protein [Desulfotomaculum ni... [more]
gi|497240815|ref|WP_009555061.1|2.461e-2248.31HU family DNA-binding protein [Oscillatoriales cya... [more]
gi|495526098|ref|WP_008250743.1|2.600e-2248.91HU family DNA-binding protein [Limnobacter sp. MED... [more]
gi|1084637328|gb|OGO86228.1|2.809e-2245.05DNA-binding protein [Clostridiales bacterium GWD2_... [more]
gi|494505680|ref|WP_007295140.1|3.098e-2243.96HU family DNA-binding protein [delta proteobacteri... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4454rna4454Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications