EWM26229.1, cds4433 (CDS) Nannochloropsis gaditana

Overview
NameEWM26229.1
Unique Namecds4433
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:608006..608175 -
Alignment locationCM002463.1:607307..607664 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26229.1
Productubiquitin ribosomal protein s27ae fusion protein
Orig transcript idgnl|cribi|Naga_100025g47.7520.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:608006..608175 -
CM002463.1supercontigCM002463.1:607307..607664 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR019954Ubiquitin_CS
IPR006846Ribosomal_S30
IPR000626Ubiquitin-like
IPR019956Ubiquitin
Homology
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|585108228|gb|EWM26229.1| (ubiquitin ribosomal protein s27ae fusion protein [Nannochloropsis gaditana])

HSP 1 Score: 354.755 bits (909), Expect = 7.834e-124
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRWVGREGEGIWQRRCGRHECEAGIGKVLNNLGVCLHHALCT 175
            MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRWVGREGEGIWQRRCGRHECEAGIGKVLNNLGVCLHHALCT
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRWVGREGEGIWQRRCGRHECEAGIGKVLNNLGVCLHHALCT 175          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|1173929453|gb|OQR82681.1| (ubiquitin [Achlya hypogyna])

HSP 1 Score: 233.417 bits (594), Expect = 2.757e-76
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPR-GRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K E +  P+ GRAKKR+ Y+RRF+NV    GGK+LGPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKSKPKTGRAKKRIQYNRRFVNVVANAGGKKLGPN 135          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|1173945127|gb|OQR93793.1| (ubiquitin [Thraustotheca clavata])

HSP 1 Score: 231.876 bits (590), Expect = 9.722e-76
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQE-KRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K E K+K   GRAKKR+ Y+RRF+NV    GGK+LGPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKKKQKTGRAKKRIQYNRRFVNVVANAGGKKLGPN 135          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|698807230|ref|XP_009836644.1| (polyubiquitin [Aphanomyces astaci] >gi|574108200|gb|ETV73708.1| polyubiquitin [Aphanomyces astaci])

HSP 1 Score: 231.876 bits (590), Expect = 1.171e-75
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEK-RKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K+E  +K  RGRAKKR+ Y+RRF+NV  G G K+LGPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKKEDTKKQKRGRAKKRIQYNRRFVNVVGGAGAKKLGPN 135          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|669149542|ref|XP_008610333.1| (50S ribosomal protein L40e [Saprolegnia diclina VS20] >gi|530737985|gb|EQC36227.1| 50S ribosomal protein L40e [Saprolegnia diclina VS20])

HSP 1 Score: 231.106 bits (588), Expect = 1.836e-75
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPR-GRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K E +K  R GRAKKR+ Y+RRF+NV    GGK++GPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKAEDKKKQRAGRAKKRIQYNRRFVNVVANAGGKKVGPN 135          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|855304118|ref|XP_012894980.1| (uncharacterized protein [Blastocystis hominis] >gi|855304197|ref|XP_012895008.1| uncharacterized protein [Blastocystis hominis] >gi|300175621|emb|CBK20932.2| unnamed protein product [Blastocystis hominis] >gi|300175649|emb|CBK20960.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 229.18 bits (583), Expect = 1.761e-74
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRW 136
            MQIFVKTLTGKTITLDVE SDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL RAGKVK QTPKV+KQEK K+  GRAKKR  Y+RR++NV    G KR+GPN +
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLTRAGKVKNQTPKVDKQEKAKSHVGRAKKREQYNRRYVNVVLAPGAKRVGPNNF 136          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|1032152311|gb|OAO15762.1| (ubiquitin [Blastocystis sp. ATCC 50177/Nand II] >gi|1032153064|gb|OAO16434.1| Ubiquitin [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 228.024 bits (580), Expect = 5.268e-74
Identity = 114/136 (83.82%), Postives = 120/136 (88.24%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRW 136
            MQIFVKTLTGKTITLDVE SDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL RAGKVK QTPKVEKQEK K+  GRAKKR +Y+RR++NV    G KR  PN +
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLTRAGKVKNQTPKVEKQEKGKSHVGRAKKREIYNRRYVNVVLAPGAKRQSPNSF 136          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|1032150468|gb|OAO14234.1| (Ubiquitin [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 235.728 bits (600), Expect = 6.071e-74
Identity = 119/158 (75.32%), Postives = 127/158 (80.38%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNRWVGREGEGIWQRRCGRH-ECEAG 157
            MQIFVKTLTGKTITLDVE SDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL RAGKVK QTPKVEKQEK K+  GRAKKR +Y+RR++NV    G KR  PN +  R+      R   +  E EA 
Sbjct:    1 MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLTRAGKVKNQTPKVEKQEKGKSHVGRAKKREIYNRRYVNVVLAPGAKRQSPNSFAMRQARITSTRNAYKAVESEAS 158          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|673031502|ref|XP_008869712.1| (polyubiquitin [Aphanomyces invadans] >gi|574474863|gb|ETW01864.1| polyubiquitin [Aphanomyces invadans])

HSP 1 Score: 225.713 bits (574), Expect = 2.569e-73
Identity = 113/135 (83.70%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEK-RKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITLDVEPSD+I+NVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSL+RAGKVK QTPKV K+E  +K  RGRAKKR+ Y+RRF+NV    G K++GPN
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLSRAGKVKNQTPKVAKKEDTKKQKRGRAKKRIQYNRRFVNVV--AGAKKMGPN 133          
BLAST of EWM26229.1 vs. NCBI_GenBank
Match: gi|635372420|emb|CCI39223.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 222.246 bits (565), Expect = 6.162e-72
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0
Query:    1 MQIFVKTLTGKTITLDVEPSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQE-KRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPN 134
            MQIFVKTLTGKTITL+VE +DTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKV KQE K+K   GRAKKR  Y+RRF+NV T  GGKR+GPN
Sbjct:    1 MQIFVKTLTGKTITLEVESADTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLNDYNIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVNKQEGKKKALTGRAKKRWQYNRRFVNVVT--GGKRVGPN 133          
The following BLAST results are available for this feature:
BLAST of EWM26229.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108228|gb|EWM26229.1|7.834e-124100.00ubiquitin ribosomal protein s27ae fusion protein [... [more]
gi|1173929453|gb|OQR82681.1|2.757e-7684.44ubiquitin [Achlya hypogyna][more]
gi|1173945127|gb|OQR93793.1|9.722e-7685.19ubiquitin [Thraustotheca clavata][more]
gi|698807230|ref|XP_009836644.1|1.171e-7585.19polyubiquitin [Aphanomyces astaci] >gi|574108200|g... [more]
gi|669149542|ref|XP_008610333.1|1.836e-7584.4450S ribosomal protein L40e [Saprolegnia diclina VS... [more]
gi|855304118|ref|XP_012894980.1|1.761e-7483.82uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|1032152311|gb|OAO15762.1|5.268e-7483.82ubiquitin [Blastocystis sp. ATCC 50177/Nand II] >g... [more]
gi|1032150468|gb|OAO14234.1|6.071e-7475.32Ubiquitin [Blastocystis sp. ATCC 50177/Nand II][more]
gi|673031502|ref|XP_008869712.1|2.569e-7383.70polyubiquitin [Aphanomyces invadans] >gi|574474863... [more]
gi|635372420|emb|CCI39223.1|6.162e-7285.19unnamed protein product [Albugo candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4444rna4444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications