EWM26226.1, cds4421 (CDS) Nannochloropsis gaditana

Overview
NameEWM26226.1
Unique Namecds4421
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:579773..579964 -
Alignment locationCM002463.1:579080..579444 -
Alignment locationCM002463.1:578795..579032 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26226.1
Productvesicle transport protein sft2a
Orig transcript idgnl|cribi|Naga_100025g61.7517.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:579773..579964 -
CM002463.1supercontigCM002463.1:579080..579444 -
CM002463.1supercontigCM002463.1:578795..579032 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011691Vesicle_transpt_SFT2
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|585108225|gb|EWM26226.1| (vesicle transport protein sft2a [Nannochloropsis gaditana])

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI 264
            MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI
Sbjct:    1 MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI 264          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|676383293|ref|XP_009034925.1| (hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens] >gi|323454224|gb|EGB10094.1| hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens])

HSP 1 Score: 166.007 bits (419), Expect = 7.451e-48
Identity = 86/158 (54.43%), Postives = 115/158 (72.78%), Query Frame = 0
Query:   24 PGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLI--SMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCP 179
            P  QE+S  +E C  CP LTYQQR+IGF  C   GYLLSF+GT+ L      A+ IRNFA LY+VGN IA+ +T FL+GP+SQCKKMFDKTRR+STI +++ LIV FAVA+A  NV +V+ L+ +Q+  ++WY+ SY+P+GR+ +V   Q+T   PCP
Sbjct:    6 PFTQEQSFEDEACDGCPKLTYQQRIIGFCACCGFGYLLSFMGTMMLAVGGPDAETIRNFATLYIVGNFIAIAATLFLLGPRSQCKKMFDKTRRFSTIFWLLTLIVTFAVAVAGVNVGVVVMLIFVQIGASIWYSASYIPYGRRMIVKIFQSTCCSPCP 163          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|568026660|gb|ETM00638.1| (hypothetical protein L917_02659 [Phytophthora parasitica])

HSP 1 Score: 140.584 bits (353), Expect = 1.083e-37
Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = 0
Query:   13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQN 172
            G+   A +   P A ++++T  V   CPSLT +QR+IGF  CF LGYL+SF  T +LI+ + +G + F   Y +GNII+LC +GFLVGPK Q K MF   RR +TI+Y++M+ VVF VALA  +   +VL L++IQ   AVWY+ SYVP+GR+ +    Q 
Sbjct:   31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYLVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQK 189          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|675182353|ref|XP_008900061.1| (hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >gi|566031386|gb|ETI54297.1| hypothetical protein F443_02862 [Phytophthora parasitica P1569] >gi|567969048|gb|ETK94155.1| hypothetical protein L915_02746 [Phytophthora parasitica] >gi|567997468|gb|ETL47548.1| hypothetical protein L916_02719 [Phytophthora parasitica] >gi|568057137|gb|ETM53819.1| hypothetical protein L914_02742 [Phytophthora parasitica] >gi|568099786|gb|ETN14492.1| hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >gi|570335096|gb|ETO83044.1| hypothetical protein F444_02875 [Phytophthora parasitica P1976] >gi|570959140|gb|ETP24119.1| hypothetical protein F441_02841 [Phytophthora parasitica CJ01A1] >gi|570995171|gb|ETP52104.1| hypothetical protein F442_02837 [Phytophthora parasitica P10297])

HSP 1 Score: 139.428 bits (350), Expect = 2.674e-37
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0
Query:   13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQN 172
            G+   A +   P A ++++T  V   CPSLT +QR+IGF  CF LGY++SF  T +LI+ + +G + F   Y +GNII+LC +GFLVGPK Q K MF   RR +TI+Y++M+ VVF VALA  +   +VL L++IQ   AVWY+ SYVP+GR+ +    Q 
Sbjct:   31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQK 189          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|298705021|emb|CBJ28496.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 139.043 bits (349), Expect = 4.096e-37
Identity = 67/151 (44.37%), Postives = 101/151 (66.89%), Query Frame = 0
Query:   23 LPG---AQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCM 170
            +PG    QE ++  E+C MCPSLT+QQR+ GFV C  LGYLLSF+ T+ L S     + +FA +Y +G++IA+ +T FL+GP+ QC KMF K RR + ++Y+++L  V  +A       ++L +LI+Q+  AVWYT SY+P+GR  + G +
Sbjct:   37 IPGFRREQEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFLGTPAGIILLVLIVQMCAAVWYTASYIPYGRAMIKGTL 184          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|955167587|emb|CUG89400.1| (transmembrane protein, putative [Bodo saltans])

HSP 1 Score: 122.865 bits (307), Expect = 2.263e-31
Identity = 61/147 (41.50%), Postives = 94/147 (63.95%), Query Frame = 0
Query:   26 AQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAV---VGC 169
            A  ES  +E   +CPSL+++QRMIGF  C     L+     L+++++       F  +  + NI AL ST FL GPK Q KKMFD+TRR +T++Y++ +++ F VALA +  +LV+ ++I+Q L  +WY++SY+PF R A+   VGC
Sbjct:   13 ANLESPFQEDDNICPSLSFKQRMIGFAVCLSFAVLME---ILAIVTLFQQEYVTFGIVNTIANIFALSSTLFLSGPKKQVKKMFDETRRIATVVYLLTMVLTFVVALAIKIAWLVILMVIVQYLAMLWYSISYIPFARDAIKKLVGC 156          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|301116605|ref|XP_002906031.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262109331|gb|EEY67383.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 122.479 bits (306), Expect = 4.217e-31
Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 0
Query:   12 TGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALA 133
            TG+   A +   P + ++++T  V   CPSLT +QR++GF  CF LGY++SF  T +LI+ + +G + F   Y +GNII+LC +GFLVGPK Q K MF   RR +T++Y++M+ VVF VALA
Sbjct:   30 TGDKKGATKTEAPASSDDALTPGVTPTCPSLTKKQRLVGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQVKLMFKPVRRIATVIYLLMIAVVFTVALA 150          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|813150645|ref|XP_012200969.1| (hypothetical protein SPRG_06189 [Saprolegnia parasitica CBS 223.65] >gi|641534189|gb|KDO28142.1| hypothetical protein SPRG_06189 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 120.939 bits (302), Expect = 1.035e-30
Identity = 63/135 (46.67%), Postives = 89/135 (65.93%), Query Frame = 0
Query:   33 EEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVA-LARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAV 166
            EE    C  LT +QRMIGF  CF LGY++SFI T +L++ + +G + F  LY +GNIIALC +GFLVGP  Q K M    RR +  +Y+ M+++V  +A LA     L+L L++IQ   AVWY+ SY+P+GR+ +
Sbjct:    2 EEAGCGCQKLTKKQRMIGFGICFGLGYVISFISTFALLAGSRNGAK-FGILYSLGNIIALCGSGFLVGPAQQVKLMMKPVRRIAAAIYVSMIVLVLVLAILAPHLGLLILILVMIQFGAAVWYSASYIPYGRKMI 135          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|568026661|gb|ETM00639.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 120.553 bits (301), Expect = 2.090e-30
Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = 0
Query:   13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALA 133
            G+   A +   P A ++++T  V   CPSLT +QR+IGF  CF LGYL+SF  T +LI+ + +G + F   Y +GNII+LC +GFLVGPK Q K MF   RR +TI+Y++M+ VVF VALA
Sbjct:   31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYLVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALA 149          
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|970659940|gb|KUF97536.1| (Vesicle transport protein SFT2B [Phytophthora nicotianae])

HSP 1 Score: 120.939 bits (302), Expect = 2.153e-30
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVW 153
            G+   A +   P A ++++T  V   CPSLT +QR+IGF  CF LGY++SF  T +LI+ + +G + F   Y +GNII+LC +GFLVGPK Q K MF   RR +TI+Y++M+ VVF VALA  +   +VL L++IQ   AVW
Sbjct:   31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVW 170          
The following BLAST results are available for this feature:
BLAST of EWM26226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108225|gb|EWM26226.1|0.000e+0100.00vesicle transport protein sft2a [Nannochloropsis g... [more]
gi|676383293|ref|XP_009034925.1|7.451e-4854.43hypothetical protein AURANDRAFT_59950 [Aureococcus... [more]
gi|568026660|gb|ETM00638.1|1.083e-3747.20hypothetical protein L917_02659 [Phytophthora para... [more]
gi|675182353|ref|XP_008900061.1|2.674e-3746.58hypothetical protein PPTG_07536 [Phytophthora para... [more]
gi|298705021|emb|CBJ28496.1|4.096e-3744.37conserved unknown protein [Ectocarpus siliculosus][more]
gi|955167587|emb|CUG89400.1|2.263e-3141.50transmembrane protein, putative [Bodo saltans][more]
gi|301116605|ref|XP_002906031.1|4.217e-3146.72conserved hypothetical protein [Phytophthora infes... [more]
gi|813150645|ref|XP_012200969.1|1.035e-3046.67hypothetical protein SPRG_06189 [Saprolegnia paras... [more]
gi|568026661|gb|ETM00639.1|2.090e-3049.59hypothetical protein, variant [Phytophthora parasi... [more]
gi|970659940|gb|KUF97536.1|2.153e-3047.18Vesicle transport protein SFT2B [Phytophthora nico... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4432rna4432Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications