EWM26226.1, cds4421 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|585108225|gb|EWM26226.1| (vesicle transport protein sft2a [Nannochloropsis gaditana]) HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0 Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query: 1 MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI 264
MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI
Sbjct: 1 MSSLYSLSLRYTGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCPGAIAGMVAKKSCHHLRQRNHLWKTTTPFIYCNVVCRKPTDSAMITSTSCSSEKHRRSVDGTMPVTPSSMCLLSRQRESKRWTIHI 264
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|676383293|ref|XP_009034925.1| (hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens] >gi|323454224|gb|EGB10094.1| hypothetical protein AURANDRAFT_59950 [Aureococcus anophagefferens]) HSP 1 Score: 166.007 bits (419), Expect = 7.451e-48 Identity = 86/158 (54.43%), Postives = 115/158 (72.78%), Query Frame = 0
Query: 24 PGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLI--SMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQNTLFKPCP 179
P QE+S +E C CP LTYQQR+IGF C GYLLSF+GT+ L A+ IRNFA LY+VGN IA+ +T FL+GP+SQCKKMFDKTRR+STI +++ LIV FAVA+A NV +V+ L+ +Q+ ++WY+ SY+P+GR+ +V Q+T PCP
Sbjct: 6 PFTQEQSFEDEACDGCPKLTYQQRIIGFCACCGFGYLLSFMGTMMLAVGGPDAETIRNFATLYIVGNFIAIAATLFLLGPRSQCKKMFDKTRRFSTIFWLLTLIVTFAVAVAGVNVGVVVMLIFVQIGASIWYSASYIPYGRRMIVKIFQSTCCSPCP 163
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|568026660|gb|ETM00638.1| (hypothetical protein L917_02659 [Phytophthora parasitica]) HSP 1 Score: 140.584 bits (353), Expect = 1.083e-37 Identity = 76/161 (47.20%), Postives = 106/161 (65.84%), Query Frame = 0
Query: 13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQN 172
G+ A + P A ++++T V CPSLT +QR+IGF CF LGYL+SF T +LI+ + +G + F Y +GNII+LC +GFLVGPK Q K MF RR +TI+Y++M+ VVF VALA + +VL L++IQ AVWY+ SYVP+GR+ + Q
Sbjct: 31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYLVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQK 189
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|675182353|ref|XP_008900061.1| (hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >gi|566031386|gb|ETI54297.1| hypothetical protein F443_02862 [Phytophthora parasitica P1569] >gi|567969048|gb|ETK94155.1| hypothetical protein L915_02746 [Phytophthora parasitica] >gi|567997468|gb|ETL47548.1| hypothetical protein L916_02719 [Phytophthora parasitica] >gi|568057137|gb|ETM53819.1| hypothetical protein L914_02742 [Phytophthora parasitica] >gi|568099786|gb|ETN14492.1| hypothetical protein PPTG_07536 [Phytophthora parasitica INRA-310] >gi|570335096|gb|ETO83044.1| hypothetical protein F444_02875 [Phytophthora parasitica P1976] >gi|570959140|gb|ETP24119.1| hypothetical protein F441_02841 [Phytophthora parasitica CJ01A1] >gi|570995171|gb|ETP52104.1| hypothetical protein F442_02837 [Phytophthora parasitica P10297]) HSP 1 Score: 139.428 bits (350), Expect = 2.674e-37 Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 0
Query: 13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCMQN 172
G+ A + P A ++++T V CPSLT +QR+IGF CF LGY++SF T +LI+ + +G + F Y +GNII+LC +GFLVGPK Q K MF RR +TI+Y++M+ VVF VALA + +VL L++IQ AVWY+ SYVP+GR+ + Q
Sbjct: 31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVWYSASYVPYGRKILTSIAQK 189
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|298705021|emb|CBJ28496.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 139.043 bits (349), Expect = 4.096e-37 Identity = 67/151 (44.37%), Postives = 101/151 (66.89%), Query Frame = 0
Query: 23 LPG---AQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAVVGCM 170
+PG QE ++ E+C MCPSLT+QQR+ GFV C LGYLLSF+ T+ L S + +FA +Y +G++IA+ +T FL+GP+ QC KMF K RR + ++Y+++L V +A ++L +LI+Q+ AVWYT SY+P+GR + G +
Sbjct: 37 IPGFRREQEPTLANEMCEMCPSLTFQQRVGGFVACLALGYLLSFLSTVMLWS---GDLSSFALIYCLGSLIAIGATSFLIGPRRQCGKMFHKKRRIACVIYLVLLFAVIILAFLGTPAGIILLVLIVQMCAAVWYTASYIPYGRAMIKGTL 184
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|955167587|emb|CUG89400.1| (transmembrane protein, putative [Bodo saltans]) HSP 1 Score: 122.865 bits (307), Expect = 2.263e-31 Identity = 61/147 (41.50%), Postives = 94/147 (63.95%), Query Frame = 0
Query: 26 AQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAV---VGC 169
A ES +E +CPSL+++QRMIGF C L+ L+++++ F + + NI AL ST FL GPK Q KKMFD+TRR +T++Y++ +++ F VALA + +LV+ ++I+Q L +WY++SY+PF R A+ VGC
Sbjct: 13 ANLESPFQEDDNICPSLSFKQRMIGFAVCLSFAVLME---ILAIVTLFQQEYVTFGIVNTIANIFALSSTLFLSGPKKQVKKMFDETRRIATVVYLLTMVLTFVVALAIKIAWLVILMVIVQYLAMLWYSISYIPFARDAIKKLVGC 156
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|301116605|ref|XP_002906031.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262109331|gb|EEY67383.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 122.479 bits (306), Expect = 4.217e-31 Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 0
Query: 12 TGNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALA 133
TG+ A + P + ++++T V CPSLT +QR++GF CF LGY++SF T +LI+ + +G + F Y +GNII+LC +GFLVGPK Q K MF RR +T++Y++M+ VVF VALA
Sbjct: 30 TGDKKGATKTEAPASSDDALTPGVTPTCPSLTKKQRLVGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQVKLMFKPVRRIATVIYLLMIAVVFTVALA 150
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|813150645|ref|XP_012200969.1| (hypothetical protein SPRG_06189 [Saprolegnia parasitica CBS 223.65] >gi|641534189|gb|KDO28142.1| hypothetical protein SPRG_06189 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 120.939 bits (302), Expect = 1.035e-30 Identity = 63/135 (46.67%), Postives = 89/135 (65.93%), Query Frame = 0
Query: 33 EEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVA-LARQNVFLVLFLLIIQVLVAVWYTLSYVPFGRQAV 166
EE C LT +QRMIGF CF LGY++SFI T +L++ + +G + F LY +GNIIALC +GFLVGP Q K M RR + +Y+ M+++V +A LA L+L L++IQ AVWY+ SY+P+GR+ +
Sbjct: 2 EEAGCGCQKLTKKQRMIGFGICFGLGYVISFISTFALLAGSRNGAK-FGILYSLGNIIALCGSGFLVGPAQQVKLMMKPVRRIAAAIYVSMIVLVLVLAILAPHLGLLILILVMIQFGAAVWYSASYIPYGRKMI 135
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|568026661|gb|ETM00639.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 120.553 bits (301), Expect = 2.090e-30 Identity = 60/121 (49.59%), Postives = 82/121 (67.77%), Query Frame = 0
Query: 13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALA 133
G+ A + P A ++++T V CPSLT +QR+IGF CF LGYL+SF T +LI+ + +G + F Y +GNII+LC +GFLVGPK Q K MF RR +TI+Y++M+ VVF VALA
Sbjct: 31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYLVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALA 149
BLAST of EWM26226.1 vs. NCBI_GenBank
Match: gi|970659940|gb|KUF97536.1| (Vesicle transport protein SFT2B [Phytophthora nicotianae]) HSP 1 Score: 120.939 bits (302), Expect = 2.153e-30 Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = 0
Query: 13 GNTMKAIQNMLPGAQEESVTEEVCAMCPSLTYQQRMIGFVGCFCLGYLLSFIGTLSLISMTADGIRNFAALYVVGNIIALCSTGFLVGPKSQCKKMFDKTRRYSTILYIIMLIVVFAVALAR-QNVFLVLFLLIIQVLVAVW 153
G+ A + P A ++++T V CPSLT +QR+IGF CF LGY++SF T +LI+ + +G + F Y +GNII+LC +GFLVGPK Q K MF RR +TI+Y++M+ VVF VALA + +VL L++IQ AVW
Sbjct: 31 GDKKSATKTEAP-ASDDALTPGVTPTCPSLTKKQRLIGFASCFVLGYIVSFGSTFALIAGSDNGTK-FGITYSLGNIISLCGSGFLVGPKQQLKLMFKPVRRIATIIYLVMIAVVFTVALAAPRLGLVVLLLVLIQCAAAVW 170 The following BLAST results are available for this feature:
BLAST of EWM26226.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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