EWM30257.1, cds442 (CDS) Nannochloropsis gaditana

Overview
NameEWM30257.1
Unique Namecds442
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1095589..1096767 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30257.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g39.1774.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1095589..1096767 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM30257.1 vs. NCBI_GenBank
Match: gi|585112916|gb|EWM30257.1| (hypothetical protein Naga_100003g39 [Nannochloropsis gaditana])

HSP 1 Score: 824.313 bits (2128), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MRFHRRSLFARQLLDQIMNGFLSMRKVAPVVALAVVTVCYSFATVKHDILEQSLLFRNSSSNATAFRTYTAASGIIDAAATIDCCSTFSMLGLEDTVNTTGDWYHYRSPKNFTASDLTLLRADIAQALAPPKRCAARQSTTNKSATLRLSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPSTKERKTQTCTKAHNLTNGVRTKEDLKMAFASFVEYVTTNKEGRDLWLIGTYARYLLNDEGRFLPRWVIRFDQLEEDWERVVQCGLGFTDAILTHENDSGDLKRSLPPRMTAMFNEERDFHYWYLPKPWCLVQQAFQIDFELFPMMNWAGMSGYHVSSEAECFV 392
            MRFHRRSLFARQLLDQIMNGFLSMRKVAPVVALAVVTVCYSFATVKHDILEQSLLFRNSSSNATAFRTYTAASGIIDAAATIDCCSTFSMLGLEDTVNTTGDWYHYRSPKNFTASDLTLLRADIAQALAPPKRCAARQSTTNKSATLRLSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPSTKERKTQTCTKAHNLTNGVRTKEDLKMAFASFVEYVTTNKEGRDLWLIGTYARYLLNDEGRFLPRWVIRFDQLEEDWERVVQCGLGFTDAILTHENDSGDLKRSLPPRMTAMFNEERDFHYWYLPKPWCLVQQAFQIDFELFPMMNWAGMSGYHVSSEAECFV
Sbjct:    1 MRFHRRSLFARQLLDQIMNGFLSMRKVAPVVALAVVTVCYSFATVKHDILEQSLLFRNSSSNATAFRTYTAASGIIDAAATIDCCSTFSMLGLEDTVNTTGDWYHYRSPKNFTASDLTLLRADIAQALAPPKRCAARQSTTNKSATLRLSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPSTKERKTQTCTKAHNLTNGVRTKEDLKMAFASFVEYVTTNKEGRDLWLIGTYARYLLNDEGRFLPRWVIRFDQLEEDWERVVQCGLGFTDAILTHENDSGDLKRSLPPRMTAMFNEERDFHYWYLPKPWCLVQQAFQIDFELFPMMNWAGMSGYHVSSEAECFV 392          
BLAST of EWM30257.1 vs. NCBI_GenBank
Match: gi|585100192|gb|EWM20514.1| (hypothetical protein Naga_100235g3 [Nannochloropsis gaditana])

HSP 1 Score: 209.92 bits (533), Expect = 1.607e-63
Identity = 111/189 (58.73%), Postives = 124/189 (65.61%), Query Frame = 0
Query:   90 MLGLEDTVNTTGDWYHYRSPKNFTASDLTLLRADIAQALAPPKRCAARQSTTNKSATLRLSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPSTKERKTQTCTKAHNLTNGVRTKEDLKMAFASFVEYVTTNKEGRDLWLIG 278
            MLGLEDT  TTGDWYH+R P N+ ASDLTLLRAD A+ALA P++                                     +KS+ L QDRL   DRDQL+AL VFTTIRDPHDR LSWFKFCL  +A PNTF K  MP T E+KTQ CTKAH LTNG+RTKEDLK+AFASFV Y+T NKEGRDL L G
Sbjct:    1 MLGLEDTAKTTGDWYHFRFPNNYAASDLTLLRADTARALAHPEK-------------------------------------NKSYFLSQDRLENPDRDQLNALGVFTTIRDPHDRTLSWFKFCLVRWATPNTFAKLIMPHTDEQKTQICTKAHTLTNGIRTKEDLKLAFASFVVYLTANKEGRDLRLSG 152          
BLAST of EWM30257.1 vs. NCBI_GenBank
Match: gi|551655066|ref|XP_005830308.1| (hypothetical protein GUITHDRAFT_110743 [Guillardia theta CCMP2712] >gi|428174432|gb|EKX43328.1| hypothetical protein GUITHDRAFT_110743 [Guillardia theta CCMP2712])

HSP 1 Score: 92.0485 bits (227), Expect = 7.911e-18
Identity = 66/204 (32.35%), Postives = 97/204 (47.55%), Query Frame = 0
Query:  134 CAARQSTTNKSATLRLSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPSTKERKTQTCTKAHNLTNGVRTKEDLKM---AFASFVEYVTTNKEGRDLWLIGTYARYLLNDEGRFLPRWVIRFDQLEEDWERVVQCGLGFTDAILTHENDSGDLKRSL 334
            C    S    +    L FLH+PKTGGE++E  L L  HK+H    DR     R  +     F+ IR+P DRMLSWF+FCL G+       + ++P  K++    C  AH L N    K ++     AF +++E    + E    W+   YA +L     +    +++RF+ L  D   V+   L     +L HEN S D KR +
Sbjct:   13 CGRSTSAIPLAERSELIFLHIPKTGGETIERALDL--HKNHLPAVDRAREYARPHVS----FSVIRNPFDRMLSWFRFCLHGW-------RGQLPDPKKQ----CMLAHRLINAFPGKHNVSTVGRAFEAWLETTLGSPEWLHYWIFFPYAIFLGGPNLKV--DFLLRFEHLSSD-LLVLAAALQRNVTMLPHENSSSDWKRGM 196          
BLAST of EWM30257.1 vs. NCBI_GenBank
Match: gi|676379865|ref|XP_009033211.1| (hypothetical protein AURANDRAFT_61459 [Aureococcus anophagefferens] >gi|323456258|gb|EGB12125.1| hypothetical protein AURANDRAFT_61459 [Aureococcus anophagefferens])

HSP 1 Score: 89.3521 bits (220), Expect = 6.185e-16
Identity = 71/232 (30.60%), Postives = 98/232 (42.24%), Query Frame = 0
Query:  149 LSFLHVPKTGGESVEINLGLGNHKSHSLGQDRLGYLDRDQLDALSVFTTIRDPHDRMLSWFKFCLAGYAPPNTFEKRRMPS---TKERKTQTCTKAHNLTNGVRTKEDLKMAFASFVEYVTTNKEGRDLWLIGTYARYLLNDE-GRFLPRWVIRFDQLEED---WERVVQCGLGFTDAILTHENDS--GDLKRSLPPRMTAMFNEERDFHYWYLPKPWCLVQQAFQIDFELF 371
            L F+HVPKTGG SVE        K+H+L        DR  L   SV   IRDP+DR LSWF+FC+AG+     + K   P+    K R+     K   +           MAF  ++  V  +    +LW+    A YL +   G FL   ++RF++L  D   W     C           EN S  GD    LP            +   Y P+   +V  A+ +D +LF
Sbjct:  177 LRFVHVPKTGGTSVEKAFKPRFPKNHALA------YDRSDLAGASVVAVIRDPYDRALSWFRFCIAGF-----YGKLPHPTAHCAKARRFHADAKKRKIRPPASPTARAAMAFERWLALVHGDAAYANLWVTTPLAVYLTHPATGEFLVDALVRFERLAADVAAWCAPRGCAAAAAKLASVQENPSRIGDDPLDLP------------YGALYTPRARAIVDAAWGVDADLF 385          
The following BLAST results are available for this feature:
BLAST of EWM30257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585112916|gb|EWM30257.1|0.000e+0100.00hypothetical protein Naga_100003g39 [Nannochlorops... [more]
gi|585100192|gb|EWM20514.1|1.607e-6358.73hypothetical protein Naga_100235g3 [Nannochloropsi... [more]
gi|551655066|ref|XP_005830308.1|7.911e-1832.35hypothetical protein GUITHDRAFT_110743 [Guillardia... [more]
gi|676379865|ref|XP_009033211.1|6.185e-1630.60hypothetical protein AURANDRAFT_61459 [Aureococcus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna442rna442Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications