EWM26281.1, cds4392 (CDS) Nannochloropsis gaditana

Overview
NameEWM26281.1
Unique Namecds4392
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:499494..499544 +
Alignment locationCM002463.1:499625..500302 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26281.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100073g8.10389.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:499494..499544 +
CM002463.1supercontigCM002463.1:499625..500302 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR019331Nefa_Nip30_N
Homology
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|585108282|gb|EWM26281.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 482.641 bits (1241), Expect = 2.841e-172
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0
Query:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLARANRDLNHTQHDTLVEDARGVAEGTGGAETQGKRLDSGRSGSSGATVAGNGNGKRAFPEVKINVKIKRKGKSGKTSEGGSKGSLSSSNIDDDKDSGHKKQKRDEEERKEKAPSTANSLSMLAAYASDEDEE 242
            MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLARANRDLNHTQHDTLVEDARGVAEGTGGAETQGKRLDSGRSGSSGATVAGNGNGKRAFPEVKINVKIKRKGKSGKTSEGGSKGSLSSSNIDDDKDSGHKKQKRDEEERKEKAPSTANSLSMLAAYASDEDEE
Sbjct:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLARANRDLNHTQHDTLVEDARGVAEGTGGAETQGKRLDSGRSGSSGATVAGNGNGKRAFPEVKINVKIKRKGKSGKTSEGGSKGSLSSSNIDDDKDSGHKKQKRDEEERKEKAPSTANSLSMLAAYASDEDEE 242          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|299472292|emb|CBN79705.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 90.8929 bits (224), Expect = 2.662e-17
Identity = 51/118 (43.22%), Postives = 80/118 (67.80%), Query Frame = 0
Query:    1 MAAIRFVATSVLSSDDGVSYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQE-KARERRRAEEEERELAAFSLARANRDL 117
            MA I FV+TSVL S DG+ +  E  ++ E  ++     K A  + LWEQL  ++++K+A++DAV   +FAPP+ALD+EE+++L G+  Q  +A+ER++  E E EL  F+LARAN+ +
Sbjct:    1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVREAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETE-ELRGFALARANQTV 117          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|301088428|ref|XP_002996897.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110739|gb|EEY68791.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 64.3142 bits (155), Expect = 6.690e-9
Identity = 44/108 (40.74%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E AA  + L+EQL+E+KE+K +E+       FAPPK LD+EE  Y+  +  +++  ER+R  + E +LA F +AR
Sbjct:   15 FVSTSVLTSSDGLFGDNVEEKRVSEAPAPR--SEDAAGYKPLYEQLQERKERKDSEWKE-KNNPFAPPKGLDDEEFEYIQDLESKKEDVERQRQAQHEEDLAQFLVAR 119          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|570968783|gb|ETP31902.1| (hypothetical protein F442_19293 [Phytophthora parasitica P10297])

HSP 1 Score: 63.929 bits (154), Expect = 1.039e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|568006636|gb|ETL80888.1| (hypothetical protein L917_18665 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 1.147e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|1214682765|gb|OWZ00927.1| (hypothetical protein PHMEG_00027782 [Phytophthora megakarya])

HSP 1 Score: 63.5438 bits (153), Expect = 1.310e-8
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR-----ANRDLNHTQH 122
            FV+TSVL+S DG+     E+    EA   R +   AA  + L+EQL+E+K++K +E+       FAPPK LDEE+  Y+  +  +++  ER+R  + E +LA F +AR     AN     TQH
Sbjct:   13 FVSTSVLTSSDGLFGDNVEEKRVSEAPAPRAQD--AAGYKPLYEQLQERKDQKDSEWKE-KNNPFAPPKGLDEEDFEYIQDLESRKEDSERKRQAQHEEDLAQFLVARGAPKTANGAPLTTQH 132          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|568006637|gb|ETL80889.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 62.3882 bits (150), Expect = 1.353e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|570968784|gb|ETP31903.1| (hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 62.003 bits (149), Expect = 1.452e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|568036480|gb|ETM34088.1| (hypothetical protein L914_18753 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 1.456e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
BLAST of EWM26281.1 vs. NCBI_GenBank
Match: gi|568036481|gb|ETM34089.1| (hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 62.003 bits (149), Expect = 1.743e-8
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = 0
Query:    6 FVATSVLSSDDGV-SYKTEQLEDEEAHKKRLEKEKAAHSRTLWEQLEEQKEKKKAEYDAVTKQIFAPPKALDEEEASYLDGILEQEKARERRRAEEEERELAAFSLAR 112
            FV+TSVL+S DG+     E+    EA   R   E  A  + L+EQL+E+KE+K +E+       FAPPK LDEEE  Y+  +  + +  ER+R  + E +LA F +AR
Sbjct:   12 FVSTSVLTSSDGLFGDNVEEKRVTEAPAPR--PEDTAGYKPLYEQLQERKEQKDSEWKE-KNNPFAPPKGLDEEEFEYIQDLESKREDVERKRQAQHEEDLAQFLVAR 116          
The following BLAST results are available for this feature:
BLAST of EWM26281.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108282|gb|EWM26281.1|2.841e-172100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|299472292|emb|CBN79705.1|2.662e-1743.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|301088428|ref|XP_002996897.1|6.690e-940.74conserved hypothetical protein [Phytophthora infes... [more]
gi|570968783|gb|ETP31902.1|1.039e-840.74hypothetical protein F442_19293 [Phytophthora para... [more]
gi|568006636|gb|ETL80888.1|1.147e-840.74hypothetical protein L917_18665 [Phytophthora para... [more]
gi|1214682765|gb|OWZ00927.1|1.310e-838.21hypothetical protein PHMEG_00027782 [Phytophthora ... [more]
gi|568006637|gb|ETL80889.1|1.353e-840.74hypothetical protein, variant 1 [Phytophthora para... [more]
gi|570968784|gb|ETP31903.1|1.452e-840.74hypothetical protein, variant 1 [Phytophthora para... [more]
gi|568036480|gb|ETM34088.1|1.456e-840.74hypothetical protein L914_18753 [Phytophthora para... [more]
gi|568036481|gb|ETM34089.1|1.743e-840.74hypothetical protein, variant 1 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4402rna4402Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications